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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0418500 |
| Transcript ID | LotjaGi4g1v0418500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HVA22-like protein; TAIR: AT4G24960.1 HVA22 homologue D; Swiss-Prot: sp|Q9S760|HA22D_ARATH HVA22-like protein d; TrEMBL-Plants: tr|I1KC07|I1KC07_SOYBN HVA22-like protein; Found in the gene: LotjaGi4g1v0418500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79410754..79412599) extracted from Lotus japonicus Gifu genome v1.2.
TGATAAGTTTACTTAAGAATCCAATTCCACACCATTGTACTAATTGTTTGCTTCACTCTCTCACGTGCTCATGCTCATAA ATTCAGAATCAGAAACATTATAAGAACAAGTAACTTCCCCTTTCACTTGCACCTACCAACATTGTTGTTTGCTTTAGTAA CTCTCCAACGTTTTTGTCTCAATCTTCCAATTCCTAGTTCCTATTTTCTTCAGTTTTCTTTCATCTTCTATTGAGTTCAA ATGGGCAAGTTCTGGGTCTTGATCAGCCAACTCCATTCCGTTGCTGGGTATGTTTTCTGATTTTAATTTCAATGCAGTGA TACCGTAAACATTTTTAAAATCTGATTAGTTGACAGTATAAAAAAATTTAAACAGTTCGTAATGTACAGTTTTTCTCCTC TGTTTCTCTTATGTATTTTTCATTTCATTCTTCAATCTAACATATTGAATCACTAATTCATATACATTTCAATTTTTTTC CGCAGGCCGGTGGTGACATTGTTGTATCCTCTGTGAGTATTGAAAATGCCTTAACACACACATAGTCATAGGTAGGTACA TTGTGTCAGTAATTTAGAAACTTTAATTAATGTTTTCTTTTAAATTAATATTTTTTTAGGTATGCATCTGTTGTGGCTAT GGAGAGCACTTCCAAATTGGATGATGATCAGTGGCTTGCTTATTGGATCCTTTATTCGATTCTCACCCTTGTGGAAATGG TTCTCCAACCCTTGTTGCAATGGTGAGTTTGAGATTAATTAATCTGAACCAATGAAAGATAGATGAAATTAATATGTCTT TGAAATGAATTAATAATAGATTATGAAATTTAGGTTCATGTGGAATAAAAAATCAAATTTTACAGGCTACCCATTTGGTA TGATGCGAAACTATTGCTGGTGGCATGGCTGGTTCTGCCACAGTTCAAAGGTGCTGCTTTCGTGTATGAAAGGTTTGTGA AACATCACATTAGAAAACACATAACAGACAGGATTCACAAGTCTCCCAAGAAAGTAAGTTAGTGAGAATTTACTTATTCA TCATTTAATTAATTTTAACCAATTTGAAATGAATTATTAGGATGGGGTTTGGATTTGAGATTTTTCTGATGCAATTTGTG TTTTGATGGTGGGGGAACAGGGGAATTATGATTCCTGAGGCTTGTTGAATTGGAAGGAGTGAAAGAAAGTGCTTTTGACT GAAGATGCAAGCGTTTGATGACCAGCTTTCAATTTTTTATTTGGTTTATTGGGTTTAATTTATCCTTTAATGTATGCTTT AGACACAAATTTCAAATCCTTGCTTTGTTGTTTCAACACATCTTTATGTAATGTGATTTCTTCCCATCACATTTGTATCC AATAAGGAGGTATAAAAGGAATTAGAATCTTTAAAGTAACTCAACTCACTCATAAGTCATAAAATAAATCGATGATCATA AACTCTTTTTTGACTAAAATTCAGGGTCTCTTTCAACTTGGCCGATAAGGCAAATTCCAATAATGTATTCCATTCTCATT ATAGTTATACCATTTCTACACCATCTAACAAGCTATTTACATAGCTTGTTTTTTTTTTCTTCTCATTATATCACTTCTTA ACATCATCCACTTATCCTACAATTTTCTCTTCATCATGTGTTCTTGGTTTTGGGCCAACTTAGTATTGGACTGACGTAAT CACACACTCCCATCAAAATATGGGCTGACCAATTATACACTTGATTGCTTTAACTTATCAAACTAGGCTTTGTCCTAAAA GGCTTGGTGCTTGTTGGGTAGTATTCCTTCTTAATTGCTATTATTTATCCCGCCACACTTTGTTTTAAGAGGCTCGGTGT CTGTCG
CDS sequence (LotjaGi4g1v0418500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAAGTTCTGGGTCTTGATCAGCCAACTCCATTCCGTTGCTGGGCCGGTGGTGACATTGTTGTATCCTCTGTATGC ATCTGTTGTGGCTATGGAGAGCACTTCCAAATTGGATGATGATCAGTGGCTTGCTTATTGGATCCTTTATTCGATTCTCA CCCTTGTGGAAATGGTTCTCCAACCCTTGTTGCAATGGCTACCCATTTGGTATGATGCGAAACTATTGCTGGTGGCATGG CTGGTTCTGCCACAGTTCAAAGGTGCTGCTTTCGTGTATGAAAGGTTTGTGAAACATCACATTAGAAAACACATAACAGA CAGGATTCACAAGTCTCCCAAGAAAGGGAATTATGATTCCTGA
Protein sequence (LotjaGi4g1v0418500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKFWVLISQLHSVAGPVVTLLYPLYASVVAMESTSKLDDDQWLAYWILYSILTLVEMVLQPLLQWLPIWYDAKLLLVAW LVLPQFKGAAFVYERFVKHHIRKHITDRIHKSPKKGNYDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 114 | 113 | 1.1E-56 | – | |
| PANTHER | 2 | 114 | 113 | 1.1E-56 | ||
| Phobius | 12 | 32 | 21 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Pfam | 24 | 98 | 75 | 1.2E-25 | ||
| Phobius | 33 | 43 | 11 | - | – | |
| TMHMM | 43 | 65 | 23 | - | – | |
| Phobius | 44 | 63 | 20 | - | – | |
| Phobius | 64 | 74 | 11 | - | – | |
| Phobius | 75 | 93 | 19 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 94 | 120 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0418500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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