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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0418600 |
| Transcript ID | LotjaGi4g1v0418600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DHHC-type zinc finger family protein; TAIR: AT5G50610.1 transmembrane protein; Swiss-Prot: sp|O48773|PDI23_ARATH Protein disulfide-isomerase 2-3; TrEMBL-Plants: tr|I3SLZ8|I3SLZ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0418600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79422567..79424372) extracted from Lotus japonicus Gifu genome v1.2.
AATCTATATAAATCATTATTTCTTGTGCTCCTAGTAGTTCAGAGAGATAAATTCATTCTTTCCTATATTCTACAACACTA CCTTAAAAAAAACCCTGCTTCAAAGGTTGTAACTTGAATCTAATGGATCCTACTCAGATCAAGAAGATTCAAGCCATGAA CAGGTACAAGAGGCGTCAGGTCCTAGATAATTTGTACTTCTATTCCTTCACTGCCTTAGCATGCAGTGTGTTCTGTTGTG TCACTCTCTGCCTTCCCTATCTTGCTTCTATGGTTCAAGTCTTTTTCATGGTCTACATGTCAAGTTTAATTCAGTTCATG TTGAGCTCAAAGCTAGTATTCTTCATCGGCAACCTAATCATATTTGTCCTCGTAGTGAACTCAAGAATGTTTTCTTCAGA TCCCTCTTCAACTTCTGATGTTTACTATGATGAGTACATTCAGAGCAGTCAAACTCATATGCCTCAGATTAATCCAACTT TTGTGGTCAACAAAGCTAAATCATTTGAGAATAAACATGTTGTGGAGAGTGTGGCAATGGCTGTGGAGGATGGACTGAAC AATCTGGACTTGAAGGCCAGAGTGTGGGTTAACAAAGCCAAAGAGGAGGACAATTCGGACGGAGAAGAAGAACAAAGTTT TCATTCTTCTTATGATGAACTGAACAGAAGGGCTGAAGATTTCATTGCAAGAGTCAACAGGCAGAGGAAGCTTGAACTTA GCCTTCTGCAACATGGTAGCTACTAAAGGATACAAGAGTTTTCCATGTATAATGTCTCTCAGAAGTAGATTAACAAACTG CATGTTTGGATTTTCCGTTGAACTGAACTTCAATCCATGTTTTGTCAACGTGACAAAATCTTATTTATCCGCTGATGCAT TGGGACATGTGTTTTCTGGTTTGCAAACGAAAAAGCAGAAACCATTATTAAGTGCTTAATGGTATTGTTAACAAGCTTTG ATCATTATCTCATCTTTCATGCCACTTTTTGCCCACTTCTATTTGGGCTTTGTTTGGATTGGGGGAGGGGGATGGAGTGG AGTGGAGTGGTGGGGAAGGAGGGAGTGATCCATTGTTTGTTTTATTTAAAATATGATGGAAGGGAGTGGTAAGTAGTGGT CCAAGATCCATCATGCTCCATTACTTTCCTTCAAATTTGCTCCCCCCAAAATTGGATGAAAAGGAATGGAAAGAAAAACT GACAACTTAAATAAATTATGAAAATACTATTCTACCCATGGTAACTTCCATCCATAACTTCTCCTATGGTGGCTCTATTT TCTCCCAACCCGTAACAACAGCAATGAATGGAAAATGTTGCAGTTCTAATAGCTTTGAATATTCATCATTCAGCCTCTCA TGTACTCTTGCTTGGCCAAACGATCTATTATAAGTGAGGTCACATCACATAAAATCAATGAATATAGATCCGGTGTGAAA AGAGCCAGTGAATATAAGTGAGGTCCATCACCTTCAACATCTATCTATAAGTTCCGGTGTGAAAAGAGCCTCAGGAGCCT GAAACCTTTCAGTCCCTACTTGAATGACCCTTCCATCTGGAAGAGTATAGTTCTTAACAAGGATGGTGGTCTCGTCCCAA TTGATATTCTCTTTTGTAGTCATAGCTTCCCTAGCATAGCTTTTTCTTTTAATTTTCAATTGCTTTTTCAGATTGTCTTT TATTTTAAAGTAAGGGTAATTTAGAAATAACAAAAATTATAACTCATTCCGCTTCGTTCATTATCCAAATAATGAGTGGT AACTTTGTTCCGCTCCTTCATAAAATATCCAAACAATGGAATGGAA
CDS sequence (LotjaGi4g1v0418600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTACTCAGATCAAGAAGATTCAAGCCATGAACAGGTACAAGAGGCGTCAGGTCCTAGATAATTTGTACTTCTA TTCCTTCACTGCCTTAGCATGCAGTGTGTTCTGTTGTGTCACTCTCTGCCTTCCCTATCTTGCTTCTATGGTTCAAGTCT TTTTCATGGTCTACATGTCAAGTTTAATTCAGTTCATGTTGAGCTCAAAGCTAGTATTCTTCATCGGCAACCTAATCATA TTTGTCCTCGTAGTGAACTCAAGAATGTTTTCTTCAGATCCCTCTTCAACTTCTGATGTTTACTATGATGAGTACATTCA GAGCAGTCAAACTCATATGCCTCAGATTAATCCAACTTTTGTGGTCAACAAAGCTAAATCATTTGAGAATAAACATGTTG TGGAGAGTGTGGCAATGGCTGTGGAGGATGGACTGAACAATCTGGACTTGAAGGCCAGAGTGTGGGTTAACAAAGCCAAA GAGGAGGACAATTCGGACGGAGAAGAAGAACAAAGTTTTCATTCTTCTTATGATGAACTGAACAGAAGGGCTGAAGATTT CATTGCAAGAGTCAACAGGCAGAGGAAGCTTGAACTTAGCCTTCTGCAACATGGTAGCTACTAA
Protein sequence (LotjaGi4g1v0418600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPTQIKKIQAMNRYKRRQVLDNLYFYSFTALACSVFCCVTLCLPYLASMVQVFFMVYMSSLIQFMLSSKLVFFIGNLII FVLVVNSRMFSSDPSSTSDVYYDEYIQSSQTHMPQINPTFVVNKAKSFENKHVVESVAMAVEDGLNNLDLKARVWVNKAK EEDNSDGEEEQSFHSSYDELNRRAEDFIARVNRQRKLELSLLQHGSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 34 | 34 | 5.0 | – | |
| PANTHER | 1 | 203 | 203 | 1.7E-57 | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 203 | 203 | 1.7E-57 | – | |
| Phobius | 24 | 47 | 24 | - | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| Phobius | 48 | 52 | 5 | - | – | |
| Phobius | 53 | 85 | 33 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 86 | 207 | 122 | - | – | |
| Coils | 177 | 197 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0418600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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