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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0419500 |
| Transcript ID | LotjaGi4g1v0419500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bidirectional sugar transporter SWEET; TAIR: AT5G23660.1 bidirectional sugar transporter SWEET12-like protein; Swiss-Prot: sp|B8BKP4|SWT14_ORYSI Bidirectional sugar transporter SWEET14; TrEMBL-Plants: tr|I1KP47|I1KP47_SOYBN Bidirectional sugar transporter SWEET; Found in the gene: LotjaGi4g1v0419500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79504873..79506993) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAGTTAGGTTCATGGATTTTCTGTAACGTCAATATTAATTCAAAGATTCATAATGTCCATGTAATTGCTAATTACA TTCACTATTGAAATATCCCCTGCCCTATATAAAAGGGATCTCCTGCCCAATTTCTTCTGTGGCAGGGTGTGAACATACTA AGCTAGTGCAAGCTTTCCCTTCCAACTTTCTCTTCTCTCCTTTCAACCAAGGAGATTGTGAAACCATGACTCATCACAAC ACTCCTATGATTTTTGCCGTTGGGATTCTAGGTATATATTTCTACACAAAAAATTAATGCTCACTTGAATTATCATATTT CACTAGTATACTTATGTTTTACACACATGAAAGACTGATATAATTTTCTTGTGATGAATGTTTTAGGTAACATTGCCTCC TTCTTTTGCTTTCTAGCACCTGTGTAAGTGCATATATATACATCTTTCTTTAATTGCAACTTGTTCATTTATATATTATT GGAATTTTAACCCGTGTAATACACAGCCAAGTTAAAATAATGCATGCATGTTTAATTTTGCAGGCCGATATTCTATCGAG TTTGTAAGAAGAAAACAACTGAAGGGTTCCAATCGGTTCCATATGTGGCTGCACTCTTCAGCGCAATGCTTTGGATCTTC TACGCTTACATAAAGACGGGTGAAATGCTCATCATCACCATCAATTCATTCGGTTGCATGATAGAAACAATTTACTTGGC CATCTATCTCACTTACTGCCCCAAGAAAGCAAGGGTGAGAACCTTCAATTGTTCTAGATGTCCAATCTTGAGCACGAAGA CATGTGTTAAAAGTCTTACAATATTAAATAGAAATATGAACATATAACAATATTTGATACTATGGTTGACTGGAATTATT GCAGAGCTTCACATTGAAGATGATTTTCTTGTGCAACTTGTTGGGGATTTGTTTGGTTGTTGTTCTAACCCACGTTCTAG CAAAAGAACGAACAGCCCGTGTGGAGCTTCTTGGATGGATTTGTGTTGTTCTTTCTACTGCTGTTTTTGCAGCACCTCTA AGCATCATTGTAAGTATATTACTTGCTACAATTTGTTGAATTAATCCTCTTGTCAACAATTAATTAATCACTAATTAATA TTCTTATATTCATGCATGCTAATTAATTAATATTGTTGTATTTCAGAAAGTGGTTATTCGCACAAAGAGTGTGGAGTTCA TGCCTTTCACTCTTTCACTCCTCCTCACCATAAGTGCAGTCATGTGGCTGTCGTACGGTATTCTCCTCAAAGATATCTTT GTTACAGTAAGCACTTCTAACTCCAATTAGTCTCCCTCATAAACTACGTACATATGAAAGCCATTGTTATTGTTTTCATG TCTTAGCAGATAGATTGTAACATGTTATTAGTCTTTGTCTAGACCAAGAAAAATTTAGTTTACAAATTAAATAAACTTTT CGAAAAAACAATTTTAGCAAATAAAGAGCATGTTGGACTAGTGACATTGTCTCTATCATTAATAATATTGTTTGTCATAA TTTTTCTGTGGACAGCTTCCGAACATAGTGGGAATCACGTTTGGATCGATTCAGATGGTGCTGTATGGAATATACAGAAA AAACACACCTGTAAAAGATCAAAAGCTGCCAGAACACAAAGGAAACATCATCAATGGTGAAAACATGACCAATACAACTT TGAGTGATGAAAATCAAAAGGAATTTGTTGAGATAGAGATTGGAGAGAAGAAGGAGAAGGAAGAGAAGCCTGTTCATGGA ACTGAAGAGAAGAAACAAGACCAAACCGAGAACAACATCGGCAACAAAACAAGGGAAGGCAATAATCAACTACAACAAAA TTAAAGGAGGGTTGAGAAGTTCTATGAAGGGATACTTGTGCACGTGTTTTGTTCCACTATCTTTCTATCTCTTCTGTCTA TCTATGCCACCACGTGTTGATCAAATTAATGTAAAATCATGAAGCCTATGTATGGCAACAGAGATGAAATAATATAGATA CTCACATATATGTATATGCGTCTCTTTGCATATAGTTAATTTCTATTTTGGTATCTCTGTTTTGTTTTCTTCAAGTTATT ACTTATGAAGAATATCAAAGTATATATACGTTTGAGTTAAT
CDS sequence (LotjaGi4g1v0419500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCATCACAACACTCCTATGATTTTTGCCGTTGGGATTCTAGGTAACATTGCCTCCTTCTTTTGCTTTCTAGCACC TGTGCCGATATTCTATCGAGTTTGTAAGAAGAAAACAACTGAAGGGTTCCAATCGGTTCCATATGTGGCTGCACTCTTCA GCGCAATGCTTTGGATCTTCTACGCTTACATAAAGACGGGTGAAATGCTCATCATCACCATCAATTCATTCGGTTGCATG ATAGAAACAATTTACTTGGCCATCTATCTCACTTACTGCCCCAAGAAAGCAAGGAGCTTCACATTGAAGATGATTTTCTT GTGCAACTTGTTGGGGATTTGTTTGGTTGTTGTTCTAACCCACGTTCTAGCAAAAGAACGAACAGCCCGTGTGGAGCTTC TTGGATGGATTTGTGTTGTTCTTTCTACTGCTGTTTTTGCAGCACCTCTAAGCATCATTAAAGTGGTTATTCGCACAAAG AGTGTGGAGTTCATGCCTTTCACTCTTTCACTCCTCCTCACCATAAGTGCAGTCATGTGGCTGTCGTACGGTATTCTCCT CAAAGATATCTTTGTTACACTTCCGAACATAGTGGGAATCACGTTTGGATCGATTCAGATGGTGCTGTATGGAATATACA GAAAAAACACACCTGTAAAAGATCAAAAGCTGCCAGAACACAAAGGAAACATCATCAATGGTGAAAACATGACCAATACA ACTTTGAGTGATGAAAATCAAAAGGAATTTGTTGAGATAGAGATTGGAGAGAAGAAGGAGAAGGAAGAGAAGCCTGTTCA TGGAACTGAAGAGAAGAAACAAGACCAAACCGAGAACAACATCGGCAACAAAACAAGGGAAGGCAATAATCAACTACAAC AAAATTAA
Protein sequence (LotjaGi4g1v0419500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTHHNTPMIFAVGILGNIASFFCFLAPVPIFYRVCKKKTTEGFQSVPYVAALFSAMLWIFYAYIKTGEMLIITINSFGCM IETIYLAIYLTYCPKKARSFTLKMIFLCNLLGICLVVVLTHVLAKERTARVELLGWICVVLSTAVFAAPLSIIKVVIRTK SVEFMPFTLSLLLTISAVMWLSYGILLKDIFVTLPNIVGITFGSIQMVLYGIYRKNTPVKDQKLPEHKGNIINGENMTNT TLSDENQKEFVEIEIGEKKEKEEKPVHGTEEKKQDQTENNIGNKTREGNNQLQQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 4 | 278 | 275 | 4.7E-127 | – | |
| PANTHER | 4 | 278 | 275 | 4.7E-127 | – | |
| Phobius | 6 | 34 | 29 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Pfam | 11 | 97 | 87 | 4.0E-26 | ||
| Gene3D | 13 | 106 | 94 | 1.2E-14 | – | |
| Phobius | 35 | 45 | 11 | - | – | |
| TMHMM | 45 | 64 | 20 | - | – | |
| Phobius | 46 | 64 | 19 | - | – | |
| Phobius | 65 | 69 | 5 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 70 | 92 | 23 | - | – | |
| Phobius | 93 | 103 | 11 | - | – | |
| Phobius | 104 | 122 | 19 | - | – | |
| TMHMM | 104 | 123 | 20 | - | – | |
| Phobius | 123 | 133 | 11 | - | – | |
| Gene3D | 129 | 226 | 98 | 3.5E-20 | – | |
| Pfam | 133 | 216 | 84 | 4.8E-27 | ||
| TMHMM | 133 | 155 | 23 | - | – | |
| Phobius | 134 | 157 | 24 | - | – | |
| Phobius | 158 | 163 | 6 | - | – | |
| Phobius | 164 | 186 | 23 | - | – | |
| TMHMM | 167 | 186 | 20 | - | – | |
| Phobius | 187 | 191 | 5 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 192 | 213 | 22 | - | – | |
| Phobius | 214 | 295 | 82 | - | – | |
| MobiDBLite | 224 | 295 | 72 | - | – | |
| MobiDBLite | 232 | 246 | 15 | - | – | |
| MobiDBLite | 247 | 280 | 34 | - | – | |
| MobiDBLite | 281 | 295 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0419500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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