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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0421400 |
| Transcript ID | LotjaGi4g1v0421400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT5G62000.1 auxin response factor 2; Swiss-Prot: sp|Q94JM3|ARFB_ARATH Auxin response factor 2; TrEMBL-Plants: tr|I1K6T1|I1K6T1_SOYBN Auxin response factor; Found in the gene: LotjaGi4g1v0421400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79660558..79666797) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGAACTAACTTTACCGAGATTTTATTTGGTCACATCAACTAATTTAACCGGCATTTTACACGAAATAGAAACTATAA TAAGAATTTTCTACATCCAACGTTAAATTTACTTGAGTCCAACACTTTTAAAGATCAATTTGAACAATCACAAGGGGTGA CACAAATGGTGAATGTGCATTTTTTTAAGAGATTTCGCCTAGGCTTCTAGCCCGGATTCGATCCTCGCTGAGGTAAAAAA TAATACTTTTGTGACCAGAGATATCATTACCGTATCCCGAGCCAGATTAGTCACGTGGGGTCCCTTTCCCCATGGAGACC GGTGGCCAAAGGAAAAAAAAAATATCAATTTCAACACTCATTCAATCAATTTAAATAAAAAAAAACATGGTAATAAGTTA ACCATGGTTAAGTTGCGCGGGTGTGGAGTTAAATGCGTAGTTTCTCTCTCTACCCATTGATTACACTTTCACATTCCTGC CCGTCCACACCACGACAACGCCATTTCCCAATGAAATAAAAACACGGCAACTTTCCCGCCACCGTCAAAATTAACGCCGT TAGTAACTGCCTCTCCGTTACCGTGGAGCCGTCTTTTCATTTATTTCAAGGGGTGGGGGACATGGGCGTTGTTTGCGTTT CCCTAGCATCTTCACCGGTTTCTCCCGGTGTAAAATGACCCCATCACCGGTAAACCCCGGTTTCAACCACGGTTGAAATC ACGCTGTTCTTGACCACTCTGGTTAAGTTAAGTCCTTCTCTTCCGACACTACCTCTGGTTCTGGTTCTGGTTCTGGTTCT GGTTCGTTCTGCAACCATTCATCACTAGAGAGAGAAAGTAGAGAGAGAAAGCGAGAGAGTTTTCGGGTTTGGGAATTGGT GCTGCTCTGAGCTTGTTGAATTTCCTTGGGAGGATTGAGAATTTGGATTTCGGATCGGAGATTGCGTTGTTCTGCTTCTG CTGATTCTGTTGAGGAGAAGGTTGTATGGGATGTGAATGAGACGCAGGGAATTTGTGAAGATCTGTGAGAAATGGCGACA TCGGAGGTAACGAACAAGGGAAATTCTGTGAACGGAATGGGTGACACCAACTACAACAACAACAACAACGATGGTAGTAG AAACGGTGCAGGAGAGGGTCAGAGTGGTTCATCATCGTCACCGACGAGAGGTAACAGTTTTTATTCGAAGAATGTGAGTT GGAGTGATGATAAAGGTGCTGATGATGAGTTTTTTGTTCTTGTTTCACAGATGCGGAAACTGCACTTTACAGGGAGCTAT GGCATGCTTGTGCTGGTCCTCTGGTTACTGTGCCAAGAGAAGGAGAGCGCGTCTTCTATTTTCCTCAGGGACACATTGAA CAGGTAATTCTTCAGAGCCTCCATGGTGAAATTTTGTGAGTTTGAGCTCAGATTCATCATTGAAATTTTGGGTTATTTGG GTTACTTTCTATATTTGGGGGGTTGGTGTTTGTGAACGGAGGGGCTAATTTTGATGGCACATATTCATGTATTTAGGTGG AGGCATCGACGAATCAGGTAGCGGAACTACACATGCCTGTTTACGATCTCCCACCCAAGATCTTGTGTCGGGTCATCAAC GTGATGCTCAAGGTAGTGTTGCTCTCAATCTCAAGTTGGTATGTGTAGTTATTATGAGATTGTTACATTTTGTATTCAAT TTTTTGGACAATTTTTCAGGCGGAGCCAGACACAGATGAGGTGTTTGCTCAGGTGACCTTACTTCCAGAACCAAATGTGA GTTTGTTTGTCCTCTTTTTTGTCTTTAATTTTTTGTGGCGTGGAGTGAGTGAGCTGTGTTATTTGTTTTGCTTTAATTGT TGTTTTGGAATATGGATCTGAATGATAGCAAGATGAGAATGCGGTGGAGAAAGAGGCTAGGCTGCCGCCGCCACCACGAT TTCACGTGCATTCGTTCTGTAAAACGCTCACAGCGTCGGATACCAGTACACACGGTGGGTTTTCAGTGCTGAGACGACAT GCTGATGAATGCCTCCCTCCGCTGGTTTGGCCTCTTATTTCCTTTTCCTCTTCATTGTGCCTTTGATTATGCTGAAGTTG GAGGAGTCCTCTCATTCTCTGTTTCTTGTTTGCTGACAGGACATGTCAAAACAGCCACCTACCCAGGAATTGGTAGCCAA GGACCTCCATGGGAGCGAGTGGCGATTCAGGCATATCTTTCGCGGTAATTACTAACCCATCATTTTGTGTCTTCAAGTTA TGTGATGGTTTTACCATTTTTTTTTTTTTTTTTTACATTTTACAATTTTGTGATCATTCTTCTGTGTGACTGATGGATGA AGTTAATTTCAGGTCAACCACGTAGACACTTATTGCAAAGCGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTAGTTGCT GGGGATGCATTTATTTTCCTAAGGTTTGTTGAATCCGTGAATTGGGTTTTAGATTTCACTGGTTTTGTCCCTTTTGGTAT TCTATTTTACACCGGACTAATTTTGGAACTTCCAGAGGTGAGAATGGGGAACTTCGAGTGGGTGTCAGGCGTGCCATGAG ACAGCAGGGTAATGTTTCATCTTCAGTTATCTCAAGCCACAGCATGCATCTCGGTGTCCTTGCAACTGCTTGGCATGCCA ACTTGACCGGGACCATGTTTACTGTTTATTACAAACCTAGGTTTGTACTTCTTGAAACTGTACCTATTCATTATGTTATC TTGGAAATTGCAGACTTATCTTGCATCCTGTAGTCTTGGTGTGTGTTTTTTTGGGGAGGGGAGGTTTTACCTGCCTGCAG CCACGCACACGTGATTCAAGTTTTTTTTATTCTTCACTGTAGGATATTTAGCAATTTTTTGAATACCGTTTTGCAGGACC AGTCCAGCTGAATTTATTGTTCCTTATGATCAATACATGGAGTCCCTTAAAAATAATTATACCATAGGTATGCGGTTCAA AATGAGGTTCGAGGGTGAAGAGGCTCCCGAGCAAAGGTATGCATTGGTAATTTGTTTTTTTCTCTGATTAAATTGTGGTC GTGTATGGTGGATTTTTCCTTTCTTTGCTCTTCTTTGACCTGGCATATAAATTTCTAGGTTTACTGGTACCATCGTTGGA ATTGAAGATGCTGATTCCAAAAGTTGGCCAAAATCTAAATGGAGATGTCTCAAGGTTGCATTTACGTTTATATGGTAGTA TGGCAATGTACAAGTGTTGAGTGAGTTTTGTTATAATTGAGCTTGTCATGTGTGATGTGTCTTCCAGGTGAGATGGGATG AAACATCTAACATACCACGTCCTGAGAGGGTTTCCCCATGGAAAATAGAGCCTGCTCTCGCTCCTCCAGCAATGAATCCT CTTATAATGCCCAGACCCAAAAGGCCTCGGTCTAATGTGGTTCCATCATCCCCCGATTCTTCGATTCTTACTCGAGAAGG TCTTAGATATTTATTTGATCTTTTGAAGAGTTCCATCTTTGTGAAATATTTGTGGTTGTGAAGCCTGATATGTTTTTGGT GATTAACAGCATCTTCTAAAGTAAACGCAGACCCTTTGCCCGCCAGTGGGTTCCCAAGGGTCTTGCAAGGTCAAGAATCA TCGACCTTGAGAGGTAATTTTGCTGAGAGCATTGAGTCTAATACTGCAGAGAAGTCTGTTCCGTGGCCACGTGCAGCAGA TGATGAAAAGATTGACGCTGCTTCTACATCAAGAAGGTATGGATCAGAGAGCTGGATGTTAATGGCAAGGCAAGAGCCAA CATATTCAGATCTTCTTTCAGGCTTTGGGGCCCGTGTAGATCATTCTTCCCATCCATCATTTGTCAATCAAACTGGTACT GTAGCTAACACTGGTAGGAAAAGTTTGATCCATCGCGAAGGGAAGCATAATGCGCTTACTCCGTGGACTGGAATGCCTTC TAGTCTATCACTCAACATCTCGGACTCTAAAACAAAAGGTTCGACACTAGGCAGTGATGTAGCTTATCAAGTTCAAGGGA ACTCGAGGTATAGTGCATTCGGTGAATATCATGTCCTTCATGGACACAAGGTTGAACATCCACATGGAAACTTTTTGATG AAACAACCTGTTCCTACCCAATATGAGAGTCCTCATTCAAAAGAACTATTGCCCAGACAATTGTCAGGAAACAGTTGTGG GGTTGCAAAACCCAAAGATGGTGACTGTAAGCTATTCGGCATCTCTCTTAGTAGCTCCATTGTACCAGAGCCTGCTACAT CACAAAGAGACGTTGAAAGTGAGCCAGTTAGTCACATGAATATTACATTACAACAACATCGTACATTTGAAAATGATCAG AAGTCTGGACATACAAGAGGCACAAAACCAGCAGATGGTCAAGTTGTAGCTGATGACCATGAGAGCCTACAAACTTCTCA GCCACTTGTTAAAGATGTTCAACTTAATTCCCATAGTGGTTCAGCTAGAAGCTGCACTAAAGTAAGTCCATGTGATGTTA TATTTTAACGAAATAAACAGCTAGAACTTTGCTATAAAAATAATGAAATGCTGTTTATTAGGTTCACAAGAAGGGGATCG CGCTTGGTAGGTCAGTGGACCTTTCAAAGTTTAATGACTACGATGAATTGATTGCTGAGTTGGATCAGCTGTTTGAATTT GGAGGTGAATTAACTTCTCCACATAAGGATTGGCTTGTTGTCTACACTGATAATGAGGGGGACATGATGCTTGTTGGGGA TGATCCGTGGCAGTAAGGATCTCTAATTATACCTCCTCAATTAATCTGTTATATTGAATTTCATTCTTTTCCTGAGAATG GCATATAATTTGCACAATTCCATCTGTAATTCAGGGAGTTTTGTGCCATGGTCCGCAAGATATATATCTACCCTAAGGAG GAGATTCAGAAAATGAGCCCCGGTACTTTGAGTTCAAAAAATGAAGAGAATCATTCAGCTAGTGAAGGTGCAGATGCACA AGAAATTAAATGCCAGCCGCCACAATCAGCTTCAGATGCCTGATAATTCGTTGATTTTGTTTCCGTAGCTTCCAGGTGAC TTTACTCCCTCATTCAATGATATTTACCCATTTGGTTTCATTGCCATGTATGAATTTTGAGAAGAAACTCATACTAAAAC GTTTTACTTTGATCCAGATTCCAGACTGGTGTGGAAAGTAGTAGTGGACTGTCTTAAAGGCTTCCCCAATTAGAGAACAT TACCTGAACAAGAAACTTTCTTATCCTGAATATGACTGCTCCTCAAGTGAATTTTGGTGTCTGGAATCAGTACATGGATG GTATGAATACTCCATCCAATTTTGGACCATGTCGTGGAATTATTAGTATTGGTATATATATATATATATGCCTTCTCAGT TATATATACTCCTAATATAGTATGTAGTCAGTGCCTTGAGCGAGGTGATAAGGGTGTATCAACCTTGCATTTTTCAGCTA TCCTACCTTGTACATAGTTAGTCTCCCGTCCTTAGAACCCCAATAACCCCATTAATGTAATTAAGTTCTATCTGATTTTA ACTTTGGTCTTTTCTTATTTTAGTAGTTGTTTGTGCTAGTATGGAGAACTCGTAGGGAATGATTGTGGATAATATATGCA TTTTGATATGTGTATGATTAAATTTTGCACTAGTTTCTACATTGGTGTGTTGTTTGGTGAGTGCGGTCATTACCATCATA TTATGCGGTAATTGGGTGTTTCTAGATGGAAGTTGAAGTCATGTCATGTCACAAGAGAAGAAAGTGGACACTTGGGTCTG CAAGTCTTGATGGTGGATTTGAAAGTTAGTGAAATGTGTTTGTGGTTAAATTGCTGTGATGACACACTTGTTGTGGTGTG GTCCTTCTCTGCTGTGAGATATTTGCAACAGGGTTACGTGATGAAACTTGATTCCATGAAAGCACCACCGTTGAATGTCT CTATTGGTTATTGTACTGCTCAGTCAAAACTCAAAAAGAGAAAACACACTGTGTGCGCACGTTGTGGACCTCATTATTTT CTGGTTCTGTCCTTTATGTCTATTGAGATTTGGCCCATGGAGTGCATTATTTGTTTAGATTAAAAGTAGGATGCAGTGGG GACTGTGGTTGGCGAAGCCTTTAATCCATGCTTCAGATGCGTGGTGCCCCATTTCTCTTAGCCTCTTCAGAAGCCAGCAT TGACTTTCCAGTTTTGTCTGGTGATGACCTTTTTACTATTTTCCCTTTTTATCTTCATCTATGAAATGGAAGATGAATGA
CDS sequence (LotjaGi4g1v0421400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACATCGGAGGTAACGAACAAGGGAAATTCTGTGAACGGAATGGGTGACACCAACTACAACAACAACAACAACGA TGGTAGTAGAAACGGTGCAGGAGAGGGTCAGAGTGGTTCATCATCGTCACCGACGAGAGATGCGGAAACTGCACTTTACA GGGAGCTATGGCATGCTTGTGCTGGTCCTCTGGTTACTGTGCCAAGAGAAGGAGAGCGCGTCTTCTATTTTCCTCAGGGA CACATTGAACAGGTGGAGGCATCGACGAATCAGGTAGCGGAACTACACATGCCTGTTTACGATCTCCCACCCAAGATCTT GTGTCGGGTCATCAACGTGATGCTCAAGGCGGAGCCAGACACAGATGAGGTGTTTGCTCAGGTGACCTTACTTCCAGAAC CAAATCAAGATGAGAATGCGGTGGAGAAAGAGGCTAGGCTGCCGCCGCCACCACGATTTCACGTGCATTCGTTCTGTAAA ACGCTCACAGCGTCGGATACCAGTACACACGGTGGGTTTTCAGTGCTGAGACGACATGCTGATGAATGCCTCCCTCCGCT GGACATGTCAAAACAGCCACCTACCCAGGAATTGGTAGCCAAGGACCTCCATGGGAGCGAGTGGCGATTCAGGCATATCT TTCGCGGTCAACCACGTAGACACTTATTGCAAAGCGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTAGTTGCTGGGGAT GCATTTATTTTCCTAAGAGGTGAGAATGGGGAACTTCGAGTGGGTGTCAGGCGTGCCATGAGACAGCAGGGTAATGTTTC ATCTTCAGTTATCTCAAGCCACAGCATGCATCTCGGTGTCCTTGCAACTGCTTGGCATGCCAACTTGACCGGGACCATGT TTACTGTTTATTACAAACCTAGGACCAGTCCAGCTGAATTTATTGTTCCTTATGATCAATACATGGAGTCCCTTAAAAAT AATTATACCATAGGTATGCGGTTCAAAATGAGGTTCGAGGGTGAAGAGGCTCCCGAGCAAAGGTTTACTGGTACCATCGT TGGAATTGAAGATGCTGATTCCAAAAGTTGGCCAAAATCTAAATGGAGATGTCTCAAGGTGAGATGGGATGAAACATCTA ACATACCACGTCCTGAGAGGGTTTCCCCATGGAAAATAGAGCCTGCTCTCGCTCCTCCAGCAATGAATCCTCTTATAATG CCCAGACCCAAAAGGCCTCGGTCTAATGTGGTTCCATCATCCCCCGATTCTTCGATTCTTACTCGAGAAGCATCTTCTAA AGTAAACGCAGACCCTTTGCCCGCCAGTGGGTTCCCAAGGGTCTTGCAAGGTCAAGAATCATCGACCTTGAGAGGTAATT TTGCTGAGAGCATTGAGTCTAATACTGCAGAGAAGTCTGTTCCGTGGCCACGTGCAGCAGATGATGAAAAGATTGACGCT GCTTCTACATCAAGAAGGTATGGATCAGAGAGCTGGATGTTAATGGCAAGGCAAGAGCCAACATATTCAGATCTTCTTTC AGGCTTTGGGGCCCGTGTAGATCATTCTTCCCATCCATCATTTGTCAATCAAACTGGTACTGTAGCTAACACTGGTAGGA AAAGTTTGATCCATCGCGAAGGGAAGCATAATGCGCTTACTCCGTGGACTGGAATGCCTTCTAGTCTATCACTCAACATC TCGGACTCTAAAACAAAAGGTTCGACACTAGGCAGTGATGTAGCTTATCAAGTTCAAGGGAACTCGAGGTATAGTGCATT CGGTGAATATCATGTCCTTCATGGACACAAGGTTGAACATCCACATGGAAACTTTTTGATGAAACAACCTGTTCCTACCC AATATGAGAGTCCTCATTCAAAAGAACTATTGCCCAGACAATTGTCAGGAAACAGTTGTGGGGTTGCAAAACCCAAAGAT GGTGACTGTAAGCTATTCGGCATCTCTCTTAGTAGCTCCATTGTACCAGAGCCTGCTACATCACAAAGAGACGTTGAAAG TGAGCCAGTTAGTCACATGAATATTACATTACAACAACATCGTACATTTGAAAATGATCAGAAGTCTGGACATACAAGAG GCACAAAACCAGCAGATGGTCAAGTTGTAGCTGATGACCATGAGAGCCTACAAACTTCTCAGCCACTTGTTAAAGATGTT CAACTTAATTCCCATAGTGGTTCAGCTAGAAGCTGCACTAAAGTTCACAAGAAGGGGATCGCGCTTGGTAGGTCAGTGGA CCTTTCAAAGTTTAATGACTACGATGAATTGATTGCTGAGTTGGATCAGCTGTTTGAATTTGGAGGTGAATTAACTTCTC CACATAAGGATTGGCTTGTTGTCTACACTGATAATGAGGGGGACATGATGCTTGTTGGGGATGATCCGTGGCAGGAGTTT TGTGCCATGGTCCGCAAGATATATATCTACCCTAAGGAGGAGATTCAGAAAATGAGCCCCGGTACTTTGAGTTCAAAAAA TGAAGAGAATCATTCAGCTAGTGAAGGTGCAGATGCACAAGAAATTAAATGCCAGCCGCCACAATCAGCTTCAGATGCCT GA
Protein sequence (LotjaGi4g1v0421400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSEVTNKGNSVNGMGDTNYNNNNNDGSRNGAGEGQSGSSSSPTRDAETALYRELWHACAGPLVTVPREGERVFYFPQG HIEQVEASTNQVAELHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEARLPPPPRFHVHSFCK TLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGD AFIFLRGENGELRVGVRRAMRQQGNVSSSVISSHSMHLGVLATAWHANLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKN NYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKSWPKSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPAMNPLIM PRPKRPRSNVVPSSPDSSILTREASSKVNADPLPASGFPRVLQGQESSTLRGNFAESIESNTAEKSVPWPRAADDEKIDA ASTSRRYGSESWMLMARQEPTYSDLLSGFGARVDHSSHPSFVNQTGTVANTGRKSLIHREGKHNALTPWTGMPSSLSLNI SDSKTKGSTLGSDVAYQVQGNSRYSAFGEYHVLHGHKVEHPHGNFLMKQPVPTQYESPHSKELLPRQLSGNSCGVAKPKD GDCKLFGISLSSSIVPEPATSQRDVESEPVSHMNITLQQHRTFENDQKSGHTRGTKPADGQVVADDHESLQTSQPLVKDV QLNSHSGSARSCTKVHKKGIALGRSVDLSKFNDYDELIAELDQLFEFGGELTSPHKDWLVVYTDNEGDMMLVGDDPWQEF CAMVRKIYIYPKEEIQKMSPGTLSSKNEENHSASEGADAQEIKCQPPQSASDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 41 | 832 | 792 | 0.0 | – | |
| PANTHER | 41 | 832 | 792 | 0.0 | – | |
| SUPERFAMILY | 154 | 287 | 134 | 6.54E-39 | ||
| Gene3D | 155 | 260 | 106 | 3.1E-45 | ||
| CDD | 156 | 258 | 103 | 4.57636E-22 | ||
| Pfam | 158 | 259 | 102 | 1.1E-21 | ||
| SMART | 158 | 260 | 103 | 5.8E-23 | ||
| ProSiteProfiles | 158 | 260 | 103 | 11.956 | ||
| Pfam | 284 | 366 | 83 | 2.1E-35 | ||
| Gene3D | 321 | 393 | 73 | 2.6E-34 | – | |
| MobiDBLite | 392 | 483 | 92 | - | – | |
| MobiDBLite | 410 | 425 | 16 | - | – | |
| MobiDBLite | 441 | 464 | 24 | - | – | |
| MobiDBLite | 469 | 483 | 15 | - | – | |
| Gene3D | 725 | 819 | 95 | 1.4E-36 | – | |
| ProSiteProfiles | 730 | 812 | 83 | 25.056 | ||
| SUPERFAMILY | 733 | 807 | 75 | 7.85E-11 | – | |
| Pfam | 776 | 818 | 43 | 1.5E-7 | ||
| MobiDBLite | 819 | 853 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi4g1v0421400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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