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LotjaGi4g1v0422400.1

Overview

Field Value
Gene ID LotjaGi4g1v0422400
Transcript ID LotjaGi4g1v0422400.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT5G61890.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114; TrEMBL-Plants: tr|A0A151SY38|A0A151SY38_CAJCA Ethylene-responsive transcription factor ERF114 family; Found in the gene: LotjaGi4g1v0422400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:79740668..79744993) extracted from Lotus japonicus Gifu genome v1.2.

TATACTTTTAAAAATATATTATCTTATAAAAATTGATAATATTCAGAAACATTAAAAGAATAAATGAGTGTAACTAATTT TATTAATAATTAAATGAGTGTAACCAATTTTATTAGTAATTAAATTAAAATAACCACCAAATATGTGGGTCAGGGATTTA TTTAACTTAAGGAGCAATCCTCGTGTATGAATAAGGTACTACCAGATGTTTAGCATCAACTTAAGTTATCATACAAGAAT ATTAATGGTTTCATAGATAAACTCATTACCAAGGCGTATTGTCTTAATTCGTTAGTCATGAAAATGTGCTCGTAGAATCA TTAACACTGCAAGAAAACTCGTCGTTACCAATGGCCAACGAGCAAAAGCTGTTGGTAATGACACGTTTCTAACGGCTTTC TGGTAGTTGCGTTGCCGTTGGTAAATGTATTGTCAGTAATAGTTGCAAACGATTTATTTACAAGTCTTCGGTAAAGTATT AACAGGTTCAACTAAGTTATCAATTGTCTAGGCCAATCAGTAACATTTGTCTATGAGTAGATTACTGACAATCTAAACCG TTGGTCAGTATGAGACATTACCAAAAACAACTCTTTCTATTGTTGGTTGTTCGTAATCTATCGACAACTTATTTGGCATG GACGAAAATAACTCTTTCTACCGCAAATGGAAGTATTACCTTCATAGAAAGAACTTTCATCTTTTAATGTCATTCGAGAC AATATTGCGATCCTCATTTATCTCAGTTATACATACATTGACATTTCACCAATAAGATATTTATTAAATGGTAAAAATTT CTTAATCGCTTTCAAATTTGATTCTGATCAAAGAGATTCAAACTGAACATGTGCATCAAGGCAGGGTATCGTTGTTGGTT GCTTGAGAGTCCTTGACTTGGTTGGTATCACACCGCAAGAGTACTAAATAAACTTTATTTCTCTTATATATATATATAGT CTAGCATTTTCTGCTTTCTTTTACTGTCTTGTTTCTCTTTTTGTCCTTCGTTGTTCTATATTTCCTTTTTCTTAGCTTGT TTTTTCTTGCTAGTTCCTGTATCAGACTTTGGCTGTTAAAGAAAATATCTCATAGGACCTCACACACAATTTGTGGTGAG AGTATCCAATCTTACATTAGCTTTGTCCATTTTTAATATATATCCTATTTATTTCTAAAAAAAAATATAGTCTAGCATTT TCACAAGAGATACACATATAAGAGATCAAAGCAACTATGATCTGACTTATTCGTATATGGAGATGGATATATAAATAATA CCTGTAGGCCGGGTGAGTTTGGCTCATTAAAATATCAAGTTTTGGTTCATTAATTCATATAGAGTTTAACATGGTTCATT AATTTATTTTGGCTTTGGAGTTTATGTTTTAGACTATCCTTTAAATTGAGTGTCGTAAATTCTTAGATCATGATTTGTCT GAGGCTATATCCTGGCTTTGTAGTTTAATTTCTGCTCCTACAACTTAAAAAAAAAGATAATAATTATAAAAAATATTAAA TATATAACATAACCTCATATAAAATATAGGAGTACTATGATATTATAATAGAATAAGTAATGTATATCCACAATTAGCTG GGAAAAAGATGCCGATTAACTAGGATTAGCTACAATAAACGTCTTTAATTTCCTACCTAATCAGTAATGTATAGTACACC ATCCTTGACATATCCTGTAAACAATTTTGATATATTCGGATGAGTTTTTCTTATACCTTATTTACACTCAATTTTCTTCA TATTCCTTTCTTATGTTTTAATGACATTATTTATTATATTTCTCATCTATATTTATGTCTCTCTCTTAAATTTGGACGTG AAATAGATGTCAAGGATACATTTTCCCTATGCAAATACAATATAAAATTAAAAAACACAAGATTTTTTAAAATTAAATAA GGAAGTAGACTATTGAGGAAGGGAGAAGACTTCTTGAACCACTACTTTATCCTGTTTATAGTTACGTGCCTACAAAATTC ATTGCGGAAACCCTAGTCTCCTCCCCTTTCTTCTTATATCAATATCATATAGCTCGTCTATTTGTTCTACCTTTGATTCT TTGACCTACTTTGCGTTTGTTCCATCGACCTACAAAACCGATCCATCCACTCATAGTTTGTTAGAGTCAATCATTTTGGC ATCCACCCTTCATGGAAGCATGAAGAAAAATATATAGTTACATAGTATTCAGAATCATTAATTGGTGAAGGACGACACAG TTGAGTTCACAAAGCAATTCTGGATCGAAAACATGGAAAGAGGCCACTTCCTTTGGAAGAAGCGGAAGAGAAATTAGAAG AGGAGCAAGTAGCTTTCCCCATTTACTCTACTCGTTCCCAGCAAGACATGTCAGCCGTGGTCTCTGCCCTTGTTCAAGTC ATTGGTGGTGGTGGGACTGATTCACTGCATAATCAACCTCCAATAATAACACCATCGGAGGAGCTCACTAGTGATTCAGC AAAAGAACAATCCCAACCACGGCAAGATCAAGGTATGTTCATATAGCATGTTTGAATTTAGTTCATTTCATGAGATTCAA TTCTAGAACTCATAAGAAAGCTACTCCTCCACGTTTAATTATGACTTTAAAATTAATTTTTGAAGAATTCCAATAGTTAG CTAGACTTTAATTAAACTTTAAGCATCTTTATTTCCTTTTGGATCCTGGTTCAAACCTGAAAATACATCATGCTTGCCTC ATGTGTATGCCGTCTTTAGGGTTTGTTAATTTTTCTTTCTAAAAATCATCATATTTTCCCTTCAACTTCTATGATAATAT AGCTGAATCTTTTGACTTTAGTTAAAAAAAATCTCAATCTCCTTTCACATTTCTAAAATAGATTCCTTATTATTTTTGGA TAGTGGAAATCTCTTAATTTTTTTTTTCACATACCTAATTAATGCGCTTACATTTATCTTATAATTTTCTCATTTTGTAT AACTTTTTGCTTTCTTATCTTCCCGGCCACTCTCCTAGCTCTCTCTCTTCCAGATTCACCAGAAATTTGGAGTCCTCGCC CATTATAATAATAAATGATAAGCCACTTTTACTTATTTATAGTATATATTATTTGCTTTTTTTAAGTGTTAGAAAGGTTA AAGAAGTGTGCAAATTATATTGTTGTAAGTTGTAATTAATATGTATAATATGTGAGTTTGTGTGTGTGTCTGAATTGAAG GAAACATTATAAGAAGAAAGTATAGAGGAGTTCGGCAGCGGCCATGGGGGAGGTGGGCGGCGGAGATTCGAGATCCAAAG AAGGCAGCTCGGGTTTGGCTTGGAACTTTTGACACCGCTGAGGCTGCTGCACTTGCTTATGATAAAACTGCTCTTTCTTT CAAAGGAAGCAAAGCTAAGCTTAATTTCCCAGAAAGAGTAGTTGAAGTTCAATGCATACAAGGACCAACACAAGGAGAAG AAGGAAAAGCAAAACTTGGTTACCTCACAAATCGTCCACAACTGATCCATCAACCACAACCACGTGCTCCTATTGCTCTT CCTTCTCAATCTGATCCAGTACTTCATGGCAACAATTTCTTAGTACCTCGTTTTTATGGGAGTGATCACGTGTTTGTTTC TTCTCGTCCTTCATCGGGTGCTTCTTCGTCTTCACCGTCATCTTCCGGAAACTCTCGTTCTCAACAAGAAAAAGAGCTTC TAACGTTTTCGATGCAATCTGGTGGTTCTTCTTCCACTTCTGATCCTCCTAAGTGATTTGGATGCATGCGGTAGACGTTG GAAACCATATATTTACTTTTATGCTCATGTGTTGTTAAGGAAATGTTTATTTGAAGAAGAAGAAGAAGATTATTTATATA AAAAATACAACTTTTAGTAAAAAGATGAGGGAAATTAAAAAGATATGCACTAATGATACACTGGCCCGAGATTCCAAAGA CATATGCAAAAAGTGAAAAAAAAAACGTGTTAAGCAAGAGATTTTAAATTTCCGTAAAATAAATATGCATGTTAATTTTG TGTCGATCTTTGCTACACTTCTAAGTAGTTAGAATTTTTTTTTAGCAATATGTAAATTGTGACCGTAAAAAACCAAAACA TCAGTATCCACAAATAGAGTTACCGCAGGCGGAACTTCTTCCGCATTATAGTCAGTAACCGCATTGTCATTACGGTGTAC AACAATTGTTAGTCGAGAGTTATCTACAACAATTGTTATTGTTGTAAAATATGTGTGAAGAAGTTGGTGTGAACACAGAC ATTAATTTTGAAAGTTTAGAAGGATAGCGGAAACCGCGTCACAATAATATCAAATGTCGGCTTTTATTATTGATTGTTGG TCACCC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0422400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAGCCGTGGTCTCTGCCCTTGTTCAAGTCATTGGTGGTGGTGGGACTGATTCACTGCATAATCAACCTCCAATAAT AACACCATCGGAGGAGCTCACTAGTGATTCAGCAAAAGAACAATCCCAACCACGGCAAGATCAAGGAAACATTATAAGAA GAAAGTATAGAGGAGTTCGGCAGCGGCCATGGGGGAGGTGGGCGGCGGAGATTCGAGATCCAAAGAAGGCAGCTCGGGTT TGGCTTGGAACTTTTGACACCGCTGAGGCTGCTGCACTTGCTTATGATAAAACTGCTCTTTCTTTCAAAGGAAGCAAAGC TAAGCTTAATTTCCCAGAAAGAGTAGTTGAAGTTCAATGCATACAAGGACCAACACAAGGAGAAGAAGGAAAAGCAAAAC TTGGTTACCTCACAAATCGTCCACAACTGATCCATCAACCACAACCACGTGCTCCTATTGCTCTTCCTTCTCAATCTGAT CCAGTACTTCATGGCAACAATTTCTTAGTACCTCGTTTTTATGGGAGTGATCACGTGTTTGTTTCTTCTCGTCCTTCATC GGGTGCTTCTTCGTCTTCACCGTCATCTTCCGGAAACTCTCGTTCTCAACAAGAAAAAGAGCTTCTAACGTTTTCGATGC AATCTGGTGGTTCTTCTTCCACTTCTGATCCTCCTAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0422400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSAVVSALVQVIGGGGTDSLHNQPPIITPSEELTSDSAKEQSQPRQDQGNIIRRKYRGVRQRPWGRWAAEIRDPKKAARV WLGTFDTAEAAALAYDKTALSFKGSKAKLNFPERVVEVQCIQGPTQGEEGKAKLGYLTNRPQLIHQPQPRAPIALPSQSD PVLHGNNFLVPRFYGSDHVFVSSRPSSGASSSSPSSSGNSRSQQEKELLTFSMQSGGSSSTSDPPK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
16 54 39 - –
MobiDBLite
mobidb-lite
21 49 29 - –
PANTHER
PTHR31190:SF167
35 204 170 1.0E-55 –
PANTHER
PTHR31190
35 204 170 1.0E-55 –
Gene3D
G3DSA:3.30.730.10
54 115 62 4.9E-31
IPR036955
SMART
SM00380
55 118 64 1.3E-36
IPR001471
ProSiteProfiles
PS51032
55 112 58 24.474
IPR001471
CDD
cd00018
55 113 59 5.58424E-34
IPR001471
SUPERFAMILY
SSF54171
55 113 59 2.29E-21
IPR016177
Pfam
PF00847
55 104 50 2.6E-13
IPR001471
PRINTS
PR00367
56 67 12 2.0E-11
IPR001471
PRINTS
PR00367
78 94 17 2.0E-11
IPR001471
MobiDBLite
mobidb-lite
181 226 46 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0422400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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