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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0426800 |
| Transcript ID | LotjaGi4g1v0426800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT5G41315.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3; TrEMBL-Plants: tr|D7UPI4|D7UPI4_LOTJA BHLH transcription factor; Found in the gene: LotjaGi4g1v0426800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80165044..80168546) extracted from Lotus japonicus Gifu genome v1.2.
CTCATCTTGGATGAACAGTAAACTATTTTGTTTGAATCTTGAAATCCTGAATCTACTGTTAGATTTTCTGGTAATACTTA CTGGTTGTAAGGTTGTTACTGAGAAGCTATTTTGTTTAGAATCATTTTGTGCTGTGACCATTTTGCAGGGTCTTGAGCTG GGGTGAAGGGTATTACAATGGAGACATTAAGACAAGGAAGACAAGTCAAGGAGTAGAACTGAGTTCTGATCAAATAGGCT TCCACAGGAGTGAGCAACTAAGAGAGCTGTTCAAGTCCCTCAAAACTGCAGAGACCAACCCACAAACAAAAAGGCCTTCA GCTTCACTATCCCCTGAAGATCTCACTGATACAGAATGGTATTATTTGGTTTGTATGTCATTTGTATTCAACATTGGCCA AGGGTAAATTCAAAACTTTTCTCATTTTATCTGTTTTTTTTTTCCTTTTTTGGTTTTTAATGTTTCTAATTTATCCTCAA ATCTGAGTTATTTTAGGTTACCAGGAAGAGTTGTAGCCAGTGGCCAACCCATTTGGATGACCAATGCTCATTCCACTGAT TGCAAACTTTTTAGTCGCTGTCTGCTGGCAAAGGTTGGATTCTGTTTCTTGACTCGGCTTGTTCTTCTGTTTTTTATCTG AGTGCAGCTTTAAATAGGCCTAACCCAACTTTTAAAATAATATCACAGCTTATTGATCCTCTATTCTAAATCCGTCTATT GGAGACCACTCATATATGGAATGTCGGCAGATGTTCATTCATGCAAATTCCATGCTCAAAATGTCCAGCTTAGGGCGTGA ATGAGTGTGCTGAGAAGTTTCACATTGACTAGAAATATATCAAAACAAGTCTTTATTTAGGGTAGAGTAGTCGTCACCCT TAGCTAGCTTCTCGGGTAGAGTTAGGCCTAGCCCAAATTCTTAAATTTAAGATTTCAGAGTCTTAAATATGACTTCTAAT TCTTTGTTTGGTTTTCTTTCCATGAACACTTATGACAAATGTCATCTCCTGTGCTCAGAGTGCATCCATTCAGGTACCAT TCTGATTTTTCTTTTCGTTTATTTGTCTTTGTATTATGAACTCTGATAGTTATTAACAGATTGCTTTATCTCAAATTTCA GACAGTGGTGTGTTTTCCTTTTATGGAAGGGGTCATTGAGCTAGGCACAACAGATCATGTAAGTTTTTCCCTTGATTTTG AAGTTCATATTACTATTCTGCAACTTCTAACCCTGTTGTTTACGTCTTCCTATTTTTGTTAAAGGTCTCAGAAGATCTCC ATCTCATTGAACGGATCAAAACTTCTTTCTTGAACATTCTGCATGCTAATGATCCTTTAAAGTCCGGAGCCACATCAAAA GCGAGAGAGGAGGAAAGTGTTGCTTGTGTTGCAGCATTTGATCACAATGCTTACAATGCTGAATTAATTCCAGAAGTTGG GTATGGCATAATCAACACAACAACCTCTCCTGATGGAAGTTCTAATGCTTTACAAGCCAACCAACCACCAGATGAAACAT TCATGGTTGATAGGATAAACCGTGGCAGCACGTCTCAATTCCAAAGCTGGCAAGTTGTTGATGATGAACTAAGCAACTGT GTCCACAACTCCGTGAATTCTAGTGACTGCATATCACAAACTTTTGCCAGCCCTGAGAAGATTGGTTCTGCTCCTAATGT TGAAAACCTTTCTGACCTTCAAAAGTGCAATAACCAAAAAATGACCTTAGTGGATCCTCTAAGTGATGATTGGCATTACC AAAAAGTTCTTTCTGCCCTTTTAAAAAACTCAGACCAGTTAAACATTGGGATGCATTTTCAGAACTTTTATCAGGAGTCA ATCTTTTCCATTTGGAAGAAAGGAGGGCCTATGGATTGCCAAAGGCCAAGAGTAGGAGCCTCACAAAACTTGTTGAAGAA AGTGCTGTTTGAAGTTCCTAGGATGCACTTGGATGGATTGCTTGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAACAA GACTAGAGGCTGATGAAAATGGCATGAACCATGTTTTGTCAGAAAGAAGAAGAAGAGCAAAACTAAATGAAAGGTTTTTA ACACTTAGATCAATGGTCCCTTCAAATATCAAGGTAATTTTTATTTGAATAAAACTTAGATACAATACCTGTTTTATACT GTTGCCCAATGAACCACTCAATCATTCACTTTCTTAACATCTTATTAAGTTTATTAGTGTGATAGCTTGTTGTAATGGAC AAAAGTAAAAATAGCATTTATGAAACTGCGCCTAAGTTTTGTCCAATAGTATATTTTAGTCTTGGCATTTGCTTGCTTGA TTGTAAGTTTGTCACTGCTCAAATTAACCGACTGCATCATTCTTGCAGGATGACAAAGTTTCTATACTAGATGATGCAAT TGAATACTTTAGAAGCCTCGAGAAAAGGATAAGAGAGTTAGAAGCTCAAAGGGACATAACTAATGTAGAAACTAGAGCTA AGAGTTCACCTCAAGATATGGTGGAGAGAACTTCTGATCATTATTCCAACAAAATTAACAATGGCAAGAAATCAGTGGTG AAAAAGAGAAAAATTTGTGACATGGAGAAGACTAATTCAGATGCTCTGAAAGTTAGTTCTACTAATGACGTTACTATCAC TATGAATGATAATGATGTTGTAATTGAAATTACATGTTCTCCTAGAGCAGGAAGACTAATGGAAATTATGGAAGCACTTA ACAGTCTCAATATATATTTCAAATCAGTTCAGTCAACAGAAGCTGATGGGCATCTTTATCTGACCATTAAATCTAAGGTG AGCACTTGGATATGCTTCTTGTTTTATACTTTTATGTATTTCATTGAACATGGCCAATTACTAAGTGCGTGTTTGGAAAT TCATCTACCAGAATCAATTCTTGGAAGAAGTTTATTTGAGTAGCTTATAGACTTTAGAATTGATTCTGAGGAAAGAGAAG TTGATCTATATATGCTATAACTGGTTATGTTCTACATCCAAGTACCCTATTGCCTTTTATCTTAGGATTTTTTGAAAATG AAAAAAAAAATCTTAGCCTTTTATCTAAGATTAAGCCTTCTTTATCTGCAGTTAACAGGACCAACTAATGCAACAGCAAA AAGGATCAAACAAGCACTCCAAAAAGTGGTTTTGAAAAGTTGAATATTTGTATTTCACTAGATGATCATGGAGTTGTTCA ATTTGATTCCTGCCATTGCCATGTGACACAGAGACTAGAGAGTTCATTATACTGGTGGAGTCACATGGAGATTCTTTCTG GAGACTTCTAATAAAGGGAAAAATAGTCTTTGAGCAATAGGCAATGGCATAACTTTTGATGATGTAACTTGACTTTTGTT TAAACAATTGTAAATGGGTACATAGACTTAGTTGACTAGTTTGGTATGTAATGCTGCTATTTGCCCCTATAGACTAACAC AGTTTGACTAATGACTATAATTGATTGTGAGATTGACATTTTTAGAGCTCGTTTGAATGGTGG
CDS sequence (LotjaGi4g1v0426800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAATGCTCATTCCACTGATTGCAAACTTTTTAGTCGCTGTCTGCTGGCAAAGAGTGCATCCATTCAGACAGTGGT GTGTTTTCCTTTTATGGAAGGGGTCATTGAGCTAGGCACAACAGATCATGTCTCAGAAGATCTCCATCTCATTGAACGGA TCAAAACTTCTTTCTTGAACATTCTGCATGCTAATGATCCTTTAAAGTCCGGAGCCACATCAAAAGCGAGAGAGGAGGAA AGTGTTGCTTGTGTTGCAGCATTTGATCACAATGCTTACAATGCTGAATTAATTCCAGAAGTTGGGTATGGCATAATCAA CACAACAACCTCTCCTGATGGAAGTTCTAATGCTTTACAAGCCAACCAACCACCAGATGAAACATTCATGGTTGATAGGA TAAACCGTGGCAGCACGTCTCAATTCCAAAGCTGGCAAGTTGTTGATGATGAACTAAGCAACTGTGTCCACAACTCCGTG AATTCTAGTGACTGCATATCACAAACTTTTGCCAGCCCTGAGAAGATTGGTTCTGCTCCTAATGTTGAAAACCTTTCTGA CCTTCAAAAGTGCAATAACCAAAAAATGACCTTAGTGGATCCTCTAAGTGATGATTGGCATTACCAAAAAGTTCTTTCTG CCCTTTTAAAAAACTCAGACCAGTTAAACATTGGGATGCATTTTCAGAACTTTTATCAGGAGTCAATCTTTTCCATTTGG AAGAAAGGAGGGCCTATGGATTGCCAAAGGCCAAGAGTAGGAGCCTCACAAAACTTGTTGAAGAAAGTGCTGTTTGAAGT TCCTAGGATGCACTTGGATGGATTGCTTGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAACAAGACTAGAGGCTGATG AAAATGGCATGAACCATGTTTTGTCAGAAAGAAGAAGAAGAGCAAAACTAAATGAAAGGTTTTTAACACTTAGATCAATG GTCCCTTCAAATATCAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACTTTAGAAGCCTCGAGAAAAGGAT AAGAGAGTTAGAAGCTCAAAGGGACATAACTAATGTAGAAACTAGAGCTAAGAGTTCACCTCAAGATATGGTGGAGAGAA CTTCTGATCATTATTCCAACAAAATTAACAATGGCAAGAAATCAGTGGTGAAAAAGAGAAAAATTTGTGACATGGAGAAG ACTAATTCAGATGCTCTGAAAGTTAGTTCTACTAATGACGTTACTATCACTATGAATGATAATGATGTTGTAATTGAAAT TACATGTTCTCCTAGAGCAGGAAGACTAATGGAAATTATGGAAGCACTTAACAGTCTCAATATATATTTCAAATCAGTTC AGTCAACAGAAGCTGATGGGCATCTTTATCTGACCATTAAATCTAAGTTAACAGGACCAACTAATGCAACAGCAAAAAGG ATCAAACAAGCACTCCAAAAAGTGGTTTTGAAAAGTTGA
Protein sequence (LotjaGi4g1v0426800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNAHSTDCKLFSRCLLAKSASIQTVVCFPFMEGVIELGTTDHVSEDLHLIERIKTSFLNILHANDPLKSGATSKAREEE SVACVAAFDHNAYNAELIPEVGYGIINTTTSPDGSSNALQANQPPDETFMVDRINRGSTSQFQSWQVVDDELSNCVHNSV NSSDCISQTFASPEKIGSAPNVENLSDLQKCNNQKMTLVDPLSDDWHYQKVLSALLKNSDQLNIGMHFQNFYQESIFSIW KKGGPMDCQRPRVGASQNLLKKVLFEVPRMHLDGLLESQEENDYKEGTRLEADENGMNHVLSERRRRAKLNERFLTLRSM VPSNIKDDKVSILDDAIEYFRSLEKRIRELEAQRDITNVETRAKSSPQDMVERTSDHYSNKINNGKKSVVKKRKICDMEK TNSDALKVSSTNDVTITMNDNDVVIEITCSPRAGRLMEIMEALNSLNIYFKSVQSTEADGHLYLTIKSKLTGPTNATAKR IKQALQKVVLKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 490 | 490 | 3.9E-137 | – | |
| PANTHER | 1 | 490 | 490 | 3.9E-137 | – | |
| Pfam | 2 | 58 | 57 | 7.3E-15 | ||
| Gene3D | 287 | 358 | 72 | 6.8E-15 | ||
| ProSiteProfiles | 294 | 343 | 50 | 16.082 | ||
| SUPERFAMILY | 297 | 362 | 66 | 3.93E-17 | ||
| CDD | 297 | 348 | 52 | 2.70857E-13 | ||
| Pfam | 298 | 344 | 47 | 9.4E-13 | ||
| SMART | 300 | 349 | 50 | 2.5E-13 | ||
| Coils | 333 | 360 | 28 | - | – | |
| MobiDBLite | 362 | 383 | 22 | - | – | |
| MobiDBLite | 366 | 380 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0426800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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