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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0428500 |
Transcript ID | LotjaGi4g1v0428500.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | AT-rich interactive domain protein; TAIR: AT4G11400.1 ARID/BRIGHT DNA-binding , ELM2 domain and myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LDD4|ARID2_ARATH AT-rich interactive domain-containing protein 2; TrEMBL-Plants: tr|A0A0B2NSA8|A0A0B2NSA8_GLYSO AT-rich interactive domain-containing protein 2; Found in the gene: LotjaGi4g1v0428500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80284184..80289694) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGAGAAGGTGAGGGTAAGAAAAATATTCCGACAGAAGCGGGGATTTTATTCCGGTAATTTCCACCTGTATTTTTCAT CCATTTTATTCTGCTCCAGCTCTCTCTCTCTTCTCTCTTCTCTCTCTCTTCGTTCATCCATTTTTCTTCATCTGTAGCAT TCAAATCTGGAACCATTTCCTGCCACCTTACACTGAATCAATGTTTTCAGGTCTCAACCTCGATCTTGTCACTCTTCACA CCGGCACCTCTATCTCCCCTTTGCCTCCGACACGAGTGTGATGATGTCTCAGTAGCTAACTAGGCGCCATAACCAACGAG GTAAATATCTATACACCATTGAAACTGCCAAATGTTCACACCCCTTTATACCCTTTTGGCTAATTTTGCGTACCCAATTC ACTCTTTCTTCTGGGTATCTGTAAATGTTCAATCTTGCCCAGCTACACTCTGTTAATTTTCGTTTCTGTTTGAACCAGCT AGGACATTGTTCTCACCGAAACGTTGCAAGCATCGAAGTAGTGAAATCGAAGTTCATGGAAGATAGGTCAGTTTTCTCTA ATGGTTCTTCCCTGGATTGCCTTGGAGCTGAAACTGTTGGTGCATTTCATGGTAACGGTTTTTGCACTGTAAACGATGAT CCTGTTGCTGACCATGAAATGGCGAAACAGCAACATTTGTTTCGTGAGCTGTTTCCGATTTACCTCAAGGAGAATTCGTC TAGAGGCATTGACCGGCCTGTGCCGGTGTTGCTTGGTGATGGTCAATTAGTGGATTTGTACAAACTGTTCACCGCTGTGA AGGAAAGAGGAGGGTGTGCTGTGGTGTCGAGAAAAAGTTTGTGGGGGTGTGTGGCACAGGACTTAGGCTTAAACCTTGAG GTTTCGCCTTCGGTTAAATTAGTGTATCACAGGTATCTCCAAGAGTTTGAAGGATGGCTGAGGAGAACCTATGAAGAGAG GAAATTTGAAAATGGGGATCATGGGGGCGATTGGGGCTTTAACTCTTTGCCATTGGATTTGGAAAAGGAGTTTAGAGGCC TATTGTCCTCTAACCCAAAGGAAGAGGAGACTGAACTTGTGCCGTCGGAATCGGATAAAATTATGAAGTACATTGATTTG GTGAACGATAAGAGTGATACTCACATGTCGGACGCCGAAAATGAAAACAAATGTGAAGGTTTGCAGCTTGTTGATGGGAA TGGTGATGCAAAATTATGCAATGGCGGTGGTGAGGATGGTCCTTCTACCTTGGATTCAGAAAATGCTGAGAAGGAATTCA ACTCTCGCAAACGCAAAAGGGAAGAATTCTCAGGAATGCTAAACTGGATCAGGAATATTGGAAAGCGTCTTCTTGATCCC TTACCACAACCAATACCAAAACCATCAAAGTTGAAGGAGTATAAAGGCCAAGACTTTTTTGGTCTGACACTGAGGGCAAG AGAGGCTCTCTTGGTGCACAAGCATGAAGAACCAAACAGTGAATCATCTTCTTTGCAGGTGTGATTTCATTGCACTTAAT GGTTTCTTCCATAGGATTTATGTGTCATTAAATATCCTGAAGCAAACCAGTTCGCTTCACTTGAATGGTTAGTTACCATT TCATTCTATTCATGCTTTGCATTAATTTTGCCCGGTTAACAAGTATAAGATCCCAAATCCACTGGTTTGTTTCCTATATT AATTGTCAATTTGTCATACATACAATCCAAAATCTTAGCTTGCTAACTGCTAAAAATCTACATAGGCTAATACAACTATA CCTAAATTGGATAAGACTGTCACGACATGCAAAATTTGCCCAGCCCAAATTTGCAATTCTAATCTTGGCACATTATAATG CTATAGATATTACTGTCAAGCATTCAAAAAGGTTAATGTTTTTCCATTTCTTATCAGCTAGTATGAAAAAAGGTTATTTT CGGTGCTGTTAAGATCGCGATATTTAGTGTAAGATCACATGATCTCATGGGTTTATGAAGGGATCAGAGCTGGATTGTGT GTGGGATAGGTAATCTGAGGGATCAAGCCAGGGTTGCCGATCTTCCTTGTGAAATCATGTGATCAATGTTCTGCTCTGAT CCTGATAGTGCTTATATCTGGGTCAGATTTCACAGCTCTGTAGCAGAAAATCCACCTTTTTTGTTGCATTCTAAACCCAA ACACACCCTATTCAGTTTGAGAATCCTTATCAAAATCCTCCATCTCTGATTCCTACATCTTTCTCAATTTGAAGTTTTGA ACCCCTAATATGAGATCCGGCACCCAAAACAAAGTCTGCCGCTGGGTTCTCTTTTCTGTTATGTCAAGTCTCAATTGCAC ATCTTAACTCTCAATTATAGTATGGATTTTTCTTGTGTTAATATACTGTTGTTTTATTAAGCAAAAACAGAAATATAGTT TTTTCACCTTAACTATGTTATATTTTTCTCATCACATAACATAGTCGTAGACCATAGAGGCAGCAATTTCATTCTGAGTT GGGCTTGGACACTTTATTTTATTTTATTTTACAATTTTAGCTGTGTTACATTATGATTATGAGCTTATATTTATTATGAG AAACTTATTTTGCGACCAACATGTGGCTGGTCTAGCTGTATAAGATCCTACGCTTATGAAATTTCAGTTTAAGTTTTGGT TAATGATGCAATTTTAAGGATATTTTCCTTATGTTTATTTTCTGTGCATATGTATATGTTCAAGTTAACTTTGCATTTTA TAATGGATCCTAGGATTCGTGTTATGATCCTGCAATTTACAATCTTTCACCCCTATCCAGATCCTTAGTAAAATATTGAT TTTGACACCATTGGTTATTTGCATTATGAAGTTTCTATAAAAGAAATCATAACTGAGAGTTTTCTCTAAAGAGTGAGCCA TAAAACAGCCGAAAGCTTGCTCCCCTGTATCTTAGTGGTAATGGCTTCTAGTCATGTAAAAAAAACCTTTCTAGTTTCCA CTCATAGGGTAATGTTACATAATCCAACCCTATCCAAACCCTACATTGGTGCAAACCTTGTGTAATAATAACTTGAAGTT GAGGGTGTGGAGCACCATTTTCTTAATAAAGTACAAATTTAATGAAGTCAAGTATTTTACCCTTTATATCGATTGCCTTT TAAACTTGTATTTAATTTTGTTTTTTGCTTGTATGATTTTGTTACTTTTGTAAATCTCCTGCTTTGATTATGGCTGCATT GTTTTCTATTTCATATGATAAATATTTGAACTTGCTATGTCAGTAATACTGTGTCTGTGTATTGATAATTGATATCTCAA ACTGGGTTAACAGATGTTAGGTTGAAACCTTCAAATTTGTTTTATTGCTATAATGCAGAGTTTAGTCTGTTGATGGGTTA GTTAATAATTTATGCACAGGTTGTGAACCATAGATAGATGGTTTTTATCAAGTGGTGAAATTAGTAGAGATAATGACAGC AGTATAATAAACTGGTGAGAAATGTGGAGGCATTATGAATTTTCTTGCTCTGTAAATGAGTTAAATGGCTACCTTGATCT GTAATTAAATCAGTGGTGTCGTGGTTGATTTTTTAAATAACTCCACTGATTAGAAAGTCAATCCCTACTTGAGGGTTTTC TTATGTCTGTTTTTTAAATAAAGTGGCAAAGCAATGACAAATCTTCATAACTGGTTACATTCAATTTTAAATGACAAGCT TCTACTAGTTTTTGCTACTTCTATGGATTTTCACAAAGTATAGCTGAGTGAGTGATACATCTGAAATGCACGAGGTCAAA CTTTATTTAATCCTTATAATGTATTACAATATGATTATAGATTCTTCAACGAATCATTCTAATTGCTATAGCTTTGTTAT CAAAACATTGAGAATTTTCTGGAACTGTATGTTTTGCAGAAGCAGAAGATGCATCCTAACATGTATGAGGATCATGTTGC TGAGGATCATGCTGCTGGGGATCATGTTGCCCGTGGTCATCAAGGTACAATGGCGTTGAGAAGTAGTAAAAGGCTCACCT CTGGTCAAAAACACCTGTGCCCTAGCTGCATTACGTGGATAGTGTGTACCTCTGGTAATAGTCACCAGTGCCCTAACTGC GATTGGTTTTTAATATGTCCTCTGAAGAAAATTGACGAGGCTCCTCTGAAGAAAACTGGCGAGGCTCCTCTGAAGAACTC TGACAAGGCTCCTCTGAAGAAAACTGGTGGGGCTTCTCTGAAGAAATTTGGTAATGCTCGTCCAAAGAGAACTGATAAAA AAGCTTATGGGGCTTATTTTATCCAAAGGCAAGCAGAACTCCCGCAATGGACTGGTAAAGTTTCTGAGAGCGACGACACT AAATGGTCTGGTACACGGGTGTGGCCTTCGAAACATGACGCAGAAACTGCTACTGAAACCGATCCTATTGGGAGAGGAAG ACAGGAGAACTGCAGCTGCAAAATTCCAGGTTCTGTGGAATGCGTCAGGTTTCACATAGCAGAGAACAGGATCAAACTGA ATCGGGAAGTGGGTTTCGCTGCATTTTACCTATGGGGTTTCAATTCCATGGGTGAGGAAGTGTGTCTTCAGTGGACACCC GAAGAAGAAAAGAGATTTAAGGCTATCATGGGGTATAAACCCTCCTTCATCGACAAGTTTTGGGCAGTGGACAATGTGTC CAAACACTTTCGAAAGAAGACAAGAAGAGATGCCGTAGGCTATTTCTTCAATGTCTTTATCCTTCAACTAAGAAGCTACC AGAATCGGGTGACTCCAGAGGAGATTGATAGTGATGATGAAGAAGGATTTGAATTTGGATCTTTCACTGGTTTCGGGATG GAAGCTGTCAAGGGTCTAGGCCCAGGTGATGATTTCATGGAGTGTGTAGAGAACAAGCAGTGCTTTGATTTTGAGAGTGT AGAGAACAAGCCGTGCTCTGATTTGGAGTGTGTAGACAACAAGCAGTGCTCTGATATGGAGATGTAGACAACAAAGAGTG CTCTGAAGAGCAGATGAAAGTGTTACCTTGATAAACCATTTTGAGGTTGAGACAATGTTTTTTTTCTGGGTTGGACTTGC ATAAAACTCATGGATGCATTCTCAGCATTAGGAAATTTTCTTTTTAACATAGACAGGAAATAGATAGAAAAAAGTGAGGC TGGAAGTTACTATAGAGGTGTTCTTGACTCTCTGACTTCCCATAGTGAAGAACTTGCTGAAGCTGCCATTAATTTTGTTG GAGATGGCTATGTTTGTTGCTTGAAATGGCAGTTTAATTCAGTACTTCTTGTAGGTTGCGCTGTTGGTCCTGTAGAACTA GTTCTTTAGTCCGAACTGATGCTTTCATTTTCATGGTTGTTACTTTGTATTCTGTACATTTAAGTTTACAAATTTTATCT GGGGAAATGGAGCACCTTTTGCTTTCTTAAAGTCTGAAAGAGCTCATTTGAGCTTATTTTCTAGCATAAGTATTAGAAAT TGTGTAGGCCTAACTCAACTTAAAAGCTAGCTCAAGAGTTGAGGTTTGCACTACCCTTATAAAGGCTATCT
CDS sequence (LotjaGi4g1v0428500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAATCTTGCCCAGCTACACTCTGTTAATTTTCGTTTCTGTTTGAACCAGCTAGGACATTGTTCTCACCGAAACGT TGCAAGCATCGAAGTAGTGAAATCGAAGTTCATGGAAGATAGGTCAGTTTTCTCTAATGGTTCTTCCCTGGATTGCCTTG GAGCTGAAACTGTTGGTGCATTTCATGGTAACGGTTTTTGCACTGTAAACGATGATCCTGTTGCTGACCATGAAATGGCG AAACAGCAACATTTGTTTCGTGAGCTGTTTCCGATTTACCTCAAGGAGAATTCGTCTAGAGGCATTGACCGGCCTGTGCC GGTGTTGCTTGGTGATGGTCAATTAGTGGATTTGTACAAACTGTTCACCGCTGTGAAGGAAAGAGGAGGGTGTGCTGTGG TGTCGAGAAAAAGTTTGTGGGGGTGTGTGGCACAGGACTTAGGCTTAAACCTTGAGGTTTCGCCTTCGGTTAAATTAGTG TATCACAGGTATCTCCAAGAGTTTGAAGGATGGCTGAGGAGAACCTATGAAGAGAGGAAATTTGAAAATGGGGATCATGG GGGCGATTGGGGCTTTAACTCTTTGCCATTGGATTTGGAAAAGGAGTTTAGAGGCCTATTGTCCTCTAACCCAAAGGAAG AGGAGACTGAACTTGTGCCGTCGGAATCGGATAAAATTATGAAGTACATTGATTTGGTGAACGATAAGAGTGATACTCAC ATGTCGGACGCCGAAAATGAAAACAAATGTGAAGGTTTGCAGCTTGTTGATGGGAATGGTGATGCAAAATTATGCAATGG CGGTGGTGAGGATGGTCCTTCTACCTTGGATTCAGAAAATGCTGAGAAGGAATTCAACTCTCGCAAACGCAAAAGGGAAG AATTCTCAGGAATGCTAAACTGGATCAGGAATATTGGAAAGCGTCTTCTTGATCCCTTACCACAACCAATACCAAAACCA TCAAAGTTGAAGGAGTATAAAGGCCAAGACTTTTTTGGTCTGACACTGAGGGCAAGAGAGGCTCTCTTGGTGCACAAGCA TGAAGAACCAAACAGTGAATCATCTTCTTTGCAGAAGCAGAAGATGCATCCTAACATGTATGAGGATCATGTTGCTGAGG ATCATGCTGCTGGGGATCATGTTGCCCGTGGTCATCAAGGTACAATGGCGTTGAGAAGTAGTAAAAGGCTCACCTCTGGT CAAAAACACCTGTGCCCTAGCTGCATTACGTGGATAGTGTGTACCTCTGGTAATAGTCACCAGTGCCCTAACTGCGATTG GTTTTTAATATGTCCTCTGAAGAAAATTGACGAGGCTCCTCTGAAGAAAACTGGCGAGGCTCCTCTGAAGAACTCTGACA AGGCTCCTCTGAAGAAAACTGGTGGGGCTTCTCTGAAGAAATTTGGTAATGCTCGTCCAAAGAGAACTGATAAAAAAGCT TATGGGGCTTATTTTATCCAAAGGCAAGCAGAACTCCCGCAATGGACTGGTAAAGTTTCTGAGAGCGACGACACTAAATG GTCTGGTACACGGGTGTGGCCTTCGAAACATGACGCAGAAACTGCTACTGAAACCGATCCTATTGGGAGAGGAAGACAGG AGAACTGCAGCTGCAAAATTCCAGGTTCTGTGGAATGCGTCAGGTTTCACATAGCAGAGAACAGGATCAAACTGAATCGG GAAGTGGGTTTCGCTGCATTTTACCTATGGGGTTTCAATTCCATGGGTGAGGAAGTGTGTCTTCAGTGGACACCCGAAGA AGAAAAGAGATTTAAGGCTATCATGGGGTATAAACCCTCCTTCATCGACAAGTTTTGGGCAGTGGACAATGTGTCCAAAC ACTTTCGAAAGAAGACAAGAAGAGATGCCGTAGGCTATTTCTTCAATGTCTTTATCCTTCAACTAAGAAGCTACCAGAAT CGGGTGACTCCAGAGGAGATTGATAGTGATGATGAAGAAGGATTTGAATTTGGATCTTTCACTGGTTTCGGGATGGAAGC TGTCAAGGGTCTAGGCCCAGGTGATGATTTCATGGAGTGTGTAGAGAACAAGCAGTGCTTTGATTTTGAGAGTGTAGAGA ACAAGCCGTGCTCTGATTTGGAGTGTGTAGACAACAAGCAGTGCTCTGATATGGAGATGTAG
Protein sequence (LotjaGi4g1v0428500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNLAQLHSVNFRFCLNQLGHCSHRNVASIEVVKSKFMEDRSVFSNGSSLDCLGAETVGAFHGNGFCTVNDDPVADHEMA KQQHLFRELFPIYLKENSSRGIDRPVPVLLGDGQLVDLYKLFTAVKERGGCAVVSRKSLWGCVAQDLGLNLEVSPSVKLV YHRYLQEFEGWLRRTYEERKFENGDHGGDWGFNSLPLDLEKEFRGLLSSNPKEEETELVPSESDKIMKYIDLVNDKSDTH MSDAENENKCEGLQLVDGNGDAKLCNGGGEDGPSTLDSENAEKEFNSRKRKREEFSGMLNWIRNIGKRLLDPLPQPIPKP SKLKEYKGQDFFGLTLRAREALLVHKHEEPNSESSSLQKQKMHPNMYEDHVAEDHAAGDHVARGHQGTMALRSSKRLTSG QKHLCPSCITWIVCTSGNSHQCPNCDWFLICPLKKIDEAPLKKTGEAPLKNSDKAPLKKTGGASLKKFGNARPKRTDKKA YGAYFIQRQAELPQWTGKVSESDDTKWSGTRVWPSKHDAETATETDPIGRGRQENCSCKIPGSVECVRFHIAENRIKLNR EVGFAAFYLWGFNSMGEEVCLQWTPEEEKRFKAIMGYKPSFIDKFWAVDNVSKHFRKKTRRDAVGYFFNVFILQLRSYQN RVTPEEIDSDDEEGFEFGSFTGFGMEAVKGLGPGDDFMECVENKQCFDFESVENKPCSDLECVDNKQCSDMEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 38 | 689 | 652 | 5.4E-146 | – | |
PANTHER | 38 | 689 | 652 | 5.4E-146 | – | |
Gene3D | 72 | 185 | 114 | 1.4E-12 | ||
SMART | 77 | 169 | 93 | 5.6E-13 | – | |
SUPERFAMILY | 78 | 174 | 97 | 3.53E-17 | ||
ProSiteProfiles | 80 | 173 | 94 | 18.573 | ||
SMART | 81 | 174 | 94 | 3.8E-14 | ||
CDD | 86 | 169 | 84 | 2.95931E-17 | – | |
Pfam | 100 | 169 | 70 | 1.2E-11 | ||
MobiDBLite | 268 | 289 | 22 | - | – | |
MobiDBLite | 445 | 471 | 27 | - | – | |
MobiDBLite | 497 | 528 | 32 | - | – | |
MobiDBLite | 510 | 527 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0428500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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