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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0428500 |
| Transcript ID | LotjaGi4g1v0428500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT-rich interactive domain protein; TAIR: AT4G11400.1 ARID/BRIGHT DNA-binding , ELM2 domain and myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q9LDD4|ARID2_ARATH AT-rich interactive domain-containing protein 2; TrEMBL-Plants: tr|K7KS19|K7KS19_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0428500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80284184..80289694) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGAGAAGGTGAGGGTAAGAAAAATATTCCGACAGAAGCGGGGATTTTATTCCGGTAATTTCCACCTGTATTTTTCAT CCATTTTATTCTGCTCCAGCTCTCTCTCTCTTCTCTCTTCTCTCTCTCTTCGTTCATCCATTTTTCTTCATCTGTAGCAT TCAAATCTGGAACCATTTCCTGCCACCTTACACTGAATCAATGTTTTCAGGTCTCAACCTCGATCTTGTCACTCTTCACA CCGGCACCTCTATCTCCCCTTTGCCTCCGACACGAGTGTGATGATGTCTCAGTAGCTAACTAGGCGCCATAACCAACGAG GTAAATATCTATACACCATTGAAACTGCCAAATGTTCACACCCCTTTATACCCTTTTGGCTAATTTTGCGTACCCAATTC ACTCTTTCTTCTGGGTATCTGTAAATGTTCAATCTTGCCCAGCTACACTCTGTTAATTTTCGTTTCTGTTTGAACCAGCT AGGACATTGTTCTCACCGAAACGTTGCAAGCATCGAAGTAGTGAAATCGAAGTTCATGGAAGATAGGTCAGTTTTCTCTA ATGGTTCTTCCCTGGATTGCCTTGGAGCTGAAACTGTTGGTGCATTTCATGGTAACGGTTTTTGCACTGTAAACGATGAT CCTGTTGCTGACCATGAAATGGCGAAACAGCAACATTTGTTTCGTGAGCTGTTTCCGATTTACCTCAAGGAGAATTCGTC TAGAGGCATTGACCGGCCTGTGCCGGTGTTGCTTGGTGATGGTCAATTAGTGGATTTGTACAAACTGTTCACCGCTGTGA AGGAAAGAGGAGGGTGTGCTGTGGTGTCGAGAAAAAGTTTGTGGGGGTGTGTGGCACAGGACTTAGGCTTAAACCTTGAG GTTTCGCCTTCGGTTAAATTAGTGTATCACAGGTATCTCCAAGAGTTTGAAGGATGGCTGAGGAGAACCTATGAAGAGAG GAAATTTGAAAATGGGGATCATGGGGGCGATTGGGGCTTTAACTCTTTGCCATTGGATTTGGAAAAGGAGTTTAGAGGCC TATTGTCCTCTAACCCAAAGGAAGAGGAGACTGAACTTGTGCCGTCGGAATCGGATAAAATTATGAAGTACATTGATTTG GTGAACGATAAGAGTGATACTCACATGTCGGACGCCGAAAATGAAAACAAATGTGAAGGTTTGCAGCTTGTTGATGGGAA TGGTGATGCAAAATTATGCAATGGCGGTGGTGAGGATGGTCCTTCTACCTTGGATTCAGAAAATGCTGAGAAGGAATTCA ACTCTCGCAAACGCAAAAGGGAAGAATTCTCAGGAATGCTAAACTGGATCAGGAATATTGGAAAGCGTCTTCTTGATCCC TTACCACAACCAATACCAAAACCATCAAAGTTGAAGGAGTATAAAGGCCAAGACTTTTTTGGTCTGACACTGAGGGCAAG AGAGGCTCTCTTGGTGCACAAGCATGAAGAACCAAACAGTGAATCATCTTCTTTGCAGGTGTGATTTCATTGCACTTAAT GGTTTCTTCCATAGGATTTATGTGTCATTAAATATCCTGAAGCAAACCAGTTCGCTTCACTTGAATGGTTAGTTACCATT TCATTCTATTCATGCTTTGCATTAATTTTGCCCGGTTAACAAGTATAAGATCCCAAATCCACTGGTTTGTTTCCTATATT AATTGTCAATTTGTCATACATACAATCCAAAATCTTAGCTTGCTAACTGCTAAAAATCTACATAGGCTAATACAACTATA CCTAAATTGGATAAGACTGTCACGACATGCAAAATTTGCCCAGCCCAAATTTGCAATTCTAATCTTGGCACATTATAATG CTATAGATATTACTGTCAAGCATTCAAAAAGGTTAATGTTTTTCCATTTCTTATCAGCTAGTATGAAAAAAGGTTATTTT CGGTGCTGTTAAGATCGCGATATTTAGTGTAAGATCACATGATCTCATGGGTTTATGAAGGGATCAGAGCTGGATTGTGT GTGGGATAGGTAATCTGAGGGATCAAGCCAGGGTTGCCGATCTTCCTTGTGAAATCATGTGATCAATGTTCTGCTCTGAT CCTGATAGTGCTTATATCTGGGTCAGATTTCACAGCTCTGTAGCAGAAAATCCACCTTTTTTGTTGCATTCTAAACCCAA ACACACCCTATTCAGTTTGAGAATCCTTATCAAAATCCTCCATCTCTGATTCCTACATCTTTCTCAATTTGAAGTTTTGA ACCCCTAATATGAGATCCGGCACCCAAAACAAAGTCTGCCGCTGGGTTCTCTTTTCTGTTATGTCAAGTCTCAATTGCAC ATCTTAACTCTCAATTATAGTATGGATTTTTCTTGTGTTAATATACTGTTGTTTTATTAAGCAAAAACAGAAATATAGTT TTTTCACCTTAACTATGTTATATTTTTCTCATCACATAACATAGTCGTAGACCATAGAGGCAGCAATTTCATTCTGAGTT GGGCTTGGACACTTTATTTTATTTTATTTTACAATTTTAGCTGTGTTACATTATGATTATGAGCTTATATTTATTATGAG AAACTTATTTTGCGACCAACATGTGGCTGGTCTAGCTGTATAAGATCCTACGCTTATGAAATTTCAGTTTAAGTTTTGGT TAATGATGCAATTTTAAGGATATTTTCCTTATGTTTATTTTCTGTGCATATGTATATGTTCAAGTTAACTTTGCATTTTA TAATGGATCCTAGGATTCGTGTTATGATCCTGCAATTTACAATCTTTCACCCCTATCCAGATCCTTAGTAAAATATTGAT TTTGACACCATTGGTTATTTGCATTATGAAGTTTCTATAAAAGAAATCATAACTGAGAGTTTTCTCTAAAGAGTGAGCCA TAAAACAGCCGAAAGCTTGCTCCCCTGTATCTTAGTGGTAATGGCTTCTAGTCATGTAAAAAAAACCTTTCTAGTTTCCA CTCATAGGGTAATGTTACATAATCCAACCCTATCCAAACCCTACATTGGTGCAAACCTTGTGTAATAATAACTTGAAGTT GAGGGTGTGGAGCACCATTTTCTTAATAAAGTACAAATTTAATGAAGTCAAGTATTTTACCCTTTATATCGATTGCCTTT TAAACTTGTATTTAATTTTGTTTTTTGCTTGTATGATTTTGTTACTTTTGTAAATCTCCTGCTTTGATTATGGCTGCATT GTTTTCTATTTCATATGATAAATATTTGAACTTGCTATGTCAGTAATACTGTGTCTGTGTATTGATAATTGATATCTCAA ACTGGGTTAACAGATGTTAGGTTGAAACCTTCAAATTTGTTTTATTGCTATAATGCAGAGTTTAGTCTGTTGATGGGTTA GTTAATAATTTATGCACAGGTTGTGAACCATAGATAGATGGTTTTTATCAAGTGGTGAAATTAGTAGAGATAATGACAGC AGTATAATAAACTGGTGAGAAATGTGGAGGCATTATGAATTTTCTTGCTCTGTAAATGAGTTAAATGGCTACCTTGATCT GTAATTAAATCAGTGGTGTCGTGGTTGATTTTTTAAATAACTCCACTGATTAGAAAGTCAATCCCTACTTGAGGGTTTTC TTATGTCTGTTTTTTAAATAAAGTGGCAAAGCAATGACAAATCTTCATAACTGGTTACATTCAATTTTAAATGACAAGCT TCTACTAGTTTTTGCTACTTCTATGGATTTTCACAAAGTATAGCTGAGTGAGTGATACATCTGAAATGCACGAGGTCAAA CTTTATTTAATCCTTATAATGTATTACAATATGATTATAGATTCTTCAACGAATCATTCTAATTGCTATAGCTTTGTTAT CAAAACATTGAGAATTTTCTGGAACTGTATGTTTTGCAGAAGCAGAAGATGCATCCTAACATGTATGAGGATCATGTTGC TGAGGATCATGCTGCTGGGGATCATGTTGCCCGTGGTCATCAAGGTACAATGGCGTTGAGAAGTAGTAAAAGGCTCACCT CTGGTCAAAAACACCTGTGCCCTAGCTGCATTACGTGGATAGTGTGTACCTCTGGTAATAGTCACCAGTGCCCTAACTGC GATTGGTTTTTAATATGTCCTCTGAAGAAAATTGACGAGGCTCCTCTGAAGAAAACTGGCGAGGCTCCTCTGAAGAACTC TGACAAGGCTCCTCTGAAGAAAACTGGTGGGGCTTCTCTGAAGAAATTTGGTAATGCTCGTCCAAAGAGAACTGATAAAA AAGCTTATGGGGCTTATTTTATCCAAAGGCAAGCAGAACTCCCGCAATGGACTGGTAAAGTTTCTGAGAGCGACGACACT AAATGGTCTGGTACACGGGTGTGGCCTTCGAAACATGACGCAGAAACTGCTACTGAAACCGATCCTATTGGGAGAGGAAG ACAGGAGAACTGCAGCTGCAAAATTCCAGGTTCTGTGGAATGCGTCAGGTTTCACATAGCAGAGAACAGGATCAAACTGA ATCGGGAAGTGGGTTTCGCTGCATTTTACCTATGGGGTTTCAATTCCATGGGTGAGGAAGTGTGTCTTCAGTGGACACCC GAAGAAGAAAAGAGATTTAAGGCTATCATGGGGTATAAACCCTCCTTCATCGACAAGTTTTGGGCAGTGGACAATGTGTC CAAACACTTTCGAAAGAAGACAAGAAGAGATGCCGTAGGCTATTTCTTCAATGTCTTTATCCTTCAACTAAGAAGCTACC AGAATCGGGTGACTCCAGAGGAGATTGATAGTGATGATGAAGAAGGATTTGAATTTGGATCTTTCACTGGTTTCGGGATG GAAGCTGTCAAGGGTCTAGGCCCAGGTGATGATTTCATGGAGTGTGTAGAGAACAAGCAGTGCTTTGATTTTGAGAGTGT AGAGAACAAGCCGTGCTCTGATTTGGAGTGTGTAGACAACAAGCAGTGCTCTGATATGGAGATGTAGACAACAAAGAGTG CTCTGAAGAGCAGATGAAAGTGTTACCTTGATAAACCATTTTGAGGTTGAGACAATGTTTTTTTTCTGGGTTGGACTTGC ATAAAACTCATGGATGCATTCTCAGCATTAGGAAATTTTCTTTTTAACATAGACAGGAAATAGATAGAAAAAAGTGAGGC TGGAAGTTACTATAGAGGTGTTCTTGACTCTCTGACTTCCCATAGTGAAGAACTTGCTGAAGCTGCCATTAATTTTGTTG GAGATGGCTATGTTTGTTGCTTGAAATGGCAGTTTAATTCAGTACTTCTTGTAGGTTGCGCTGTTGGTCCTGTAGAACTA GTTCTTTAGTCCGAACTGATGCTTTCATTTTCATGGTTGTTACTTTGTATTCTGTACATTTAAGTTTACAAATTTTATCT GGGGAAATGGAGCACCTTTTGCTTTCTTAAAGTCTGAAAGAGCTCATTTGAGCTTATTTTCTAGCATAAGTATTAGAAAT TGTGTAGGCCTAACTCAACTTAAAAGCTAGCTCAAGAGTTGAGGTTTGCACTACCCTTATAAAGGCTATCT
CDS sequence (LotjaGi4g1v0428500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATAGGTCAGTTTTCTCTAATGGTTCTTCCCTGGATTGCCTTGGAGCTGAAACTGTTGGTGCATTTCATGGTAA CGGTTTTTGCACTGTAAACGATGATCCTGTTGCTGACCATGAAATGGCGAAACAGCAACATTTGTTTCGTGAGCTGTTTC CGATTTACCTCAAGGAGAATTCGTCTAGAGGCATTGACCGGCCTGTGCCGGTGTTGCTTGGTGATGGTCAATTAGTGGAT TTGTACAAACTGTTCACCGCTGTGAAGGAAAGAGGAGGGTGTGCTGTGGTGTCGAGAAAAAGTTTGTGGGGGTGTGTGGC ACAGGACTTAGGCTTAAACCTTGAGGTTTCGCCTTCGGTTAAATTAGTGTATCACAGGTATCTCCAAGAGTTTGAAGGAT GGCTGAGGAGAACCTATGAAGAGAGGAAATTTGAAAATGGGGATCATGGGGGCGATTGGGGCTTTAACTCTTTGCCATTG GATTTGGAAAAGGAGTTTAGAGGCCTATTGTCCTCTAACCCAAAGGAAGAGGAGACTGAACTTGTGCCGTCGGAATCGGA TAAAATTATGAAGTACATTGATTTGGTGAACGATAAGAGTGATACTCACATGTCGGACGCCGAAAATGAAAACAAATGTG AAGGTTTGCAGCTTGTTGATGGGAATGGTGATGCAAAATTATGCAATGGCGGTGGTGAGGATGGTCCTTCTACCTTGGAT TCAGAAAATGCTGAGAAGGAATTCAACTCTCGCAAACGCAAAAGGGAAGAATTCTCAGGAATGCTAAACTGGATCAGGAA TATTGGAAAGCGTCTTCTTGATCCCTTACCACAACCAATACCAAAACCATCAAAGTTGAAGGAGTATAAAGGCCAAGACT TTTTTGGTCTGACACTGAGGGCAAGAGAGGCTCTCTTGGTGCACAAGCATGAAGAACCAAACAGTGAATCATCTTCTTTG CAGAAGCAGAAGATGCATCCTAACATGTATGAGGATCATGTTGCTGAGGATCATGCTGCTGGGGATCATGTTGCCCGTGG TCATCAAGGTACAATGGCGTTGAGAAGTAGTAAAAGGCTCACCTCTGGTCAAAAACACCTGTGCCCTAGCTGCATTACGT GGATAGTGTGTACCTCTGGTAATAGTCACCAGTGCCCTAACTGCGATTGGTTTTTAATATGTCCTCTGAAGAAAATTGAC GAGGCTCCTCTGAAGAAAACTGGCGAGGCTCCTCTGAAGAACTCTGACAAGGCTCCTCTGAAGAAAACTGGTGGGGCTTC TCTGAAGAAATTTGGTAATGCTCGTCCAAAGAGAACTGATAAAAAAGCTTATGGGGCTTATTTTATCCAAAGGCAAGCAG AACTCCCGCAATGGACTGGTAAAGTTTCTGAGAGCGACGACACTAAATGGTCTGGTACACGGGTGTGGCCTTCGAAACAT GACGCAGAAACTGCTACTGAAACCGATCCTATTGGGAGAGGAAGACAGGAGAACTGCAGCTGCAAAATTCCAGGTTCTGT GGAATGCGTCAGGTTTCACATAGCAGAGAACAGGATCAAACTGAATCGGGAAGTGGGTTTCGCTGCATTTTACCTATGGG GTTTCAATTCCATGGGTGAGGAAGTGTGTCTTCAGTGGACACCCGAAGAAGAAAAGAGATTTAAGGCTATCATGGGGTAT AAACCCTCCTTCATCGACAAGTTTTGGGCAGTGGACAATGTGTCCAAACACTTTCGAAAGAAGACAAGAAGAGATGCCGT AGGCTATTTCTTCAATGTCTTTATCCTTCAACTAAGAAGCTACCAGAATCGGGTGACTCCAGAGGAGATTGATAGTGATG ATGAAGAAGGATTTGAATTTGGATCTTTCACTGGTTTCGGGATGGAAGCTGTCAAGGGTCTAGGCCCAGGTGATGATTTC ATGGAGTGTGTAGAGAACAAGCAGTGCTTTGATTTTGAGAGTGTAGAGAACAAGCCGTGCTCTGATTTGGAGTGTGTAGA CAACAAGCAGTGCTCTGATATGGAGATGTAG
Protein sequence (LotjaGi4g1v0428500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDRSVFSNGSSLDCLGAETVGAFHGNGFCTVNDDPVADHEMAKQQHLFRELFPIYLKENSSRGIDRPVPVLLGDGQLVD LYKLFTAVKERGGCAVVSRKSLWGCVAQDLGLNLEVSPSVKLVYHRYLQEFEGWLRRTYEERKFENGDHGGDWGFNSLPL DLEKEFRGLLSSNPKEEETELVPSESDKIMKYIDLVNDKSDTHMSDAENENKCEGLQLVDGNGDAKLCNGGGEDGPSTLD SENAEKEFNSRKRKREEFSGMLNWIRNIGKRLLDPLPQPIPKPSKLKEYKGQDFFGLTLRAREALLVHKHEEPNSESSSL QKQKMHPNMYEDHVAEDHAAGDHVARGHQGTMALRSSKRLTSGQKHLCPSCITWIVCTSGNSHQCPNCDWFLICPLKKID EAPLKKTGEAPLKNSDKAPLKKTGGASLKKFGNARPKRTDKKAYGAYFIQRQAELPQWTGKVSESDDTKWSGTRVWPSKH DAETATETDPIGRGRQENCSCKIPGSVECVRFHIAENRIKLNREVGFAAFYLWGFNSMGEEVCLQWTPEEEKRFKAIMGY KPSFIDKFWAVDNVSKHFRKKTRRDAVGYFFNVFILQLRSYQNRVTPEEIDSDDEEGFEFGSFTGFGMEAVKGLGPGDDF MECVENKQCFDFESVENKPCSDLECVDNKQCSDMEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 652 | 652 | 4.5E-146 | – | |
| PANTHER | 1 | 652 | 652 | 4.5E-146 | – | |
| Gene3D | 35 | 148 | 114 | 1.3E-12 | ||
| SMART | 40 | 132 | 93 | 5.6E-13 | – | |
| SUPERFAMILY | 41 | 137 | 97 | 3.27E-17 | ||
| ProSiteProfiles | 43 | 136 | 94 | 18.573 | ||
| SMART | 44 | 137 | 94 | 3.8E-14 | ||
| CDD | 49 | 132 | 84 | 2.74402E-17 | – | |
| Pfam | 63 | 132 | 70 | 1.1E-11 | ||
| MobiDBLite | 231 | 252 | 22 | - | – | |
| MobiDBLite | 408 | 434 | 27 | - | – | |
| MobiDBLite | 460 | 491 | 32 | - | – | |
| MobiDBLite | 473 | 490 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0428500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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