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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0430200 |
| Transcript ID | LotjaGi4g1v0430200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | D111/G-patch domain protein; TAIR: AT1G63980.2 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q96BK5|PINX1_HUMAN PIN2/TERF1-interacting telomerase inhibitor 1; TrEMBL-Plants: tr|I1K6E1|I1K6E1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0430200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80439864..80444256) extracted from Lotus japonicus Gifu genome v1.2.
CCCGACCCGAATAAAAAGAGAAATCAAAATTCGAAAGCGAAAGCCCTAAACCCCTAACACGAGTAGGTAGAAGAAGAAGA AGAAGCAAAACACAAATCAGAACAGAAAGTAAGCTCTGGCTGTGCAGTGCATATAGGAATCAGCGGTGCAGTCGGCGGAG CCATGGCGGCGCCTGAAACCCCTCTCTGTTACGTCGGTGTCGCCAGGCGATCCGCTGCTTTTCGCCTCATGAAGCAAATG GTACTCCTCACAATCCTCTCTCTCTCTCTGTGTTCCATTTTTTCTGTAATTGCTTGCGAATTGAACTCGATTTGGTGATT GATTTAGGGTTGGGAAGAAGGAGAAGGTCTTGGCAAAGAGAAGCAGGGAATCAAAGGATATGTTCGAGTCCAGAACAAAC AGGACACTATTGGTTTGATTTTCTTCCTTTACATCTATCATCACATGCTATTCTCTATTACCAGATTCATAATTCATAGT TAGTTTTCACTTTTCAGCTTGTTATGTGAGAATTGAGATAGGAAGTTAGTTTCAGTCAGTTACATTTTTCTGTTGATTAG GTATTGGCTTAGAGAAGCCTAACCAGTGGGCATTTGACACCACACAGTTTGATAGTATCCTCAAGAGATTGAAAGTTGTA TGTCCCTCTTTCTCTACTTACTCACAATCTCATTTCTTTCAATTCCTGATATGTTTACTGAATTATTTCTTTTTTTTTTC CCTCTGAAATGTGTAGCAAGCGCCGGAATCCAAGGACAAAGGTATAATCATCTTACCTTCCTCTGTTTTCGCAATAGATT ATCGTCATGTCTTTCATTTATGTCTTGAATGTGTTGTGAGGGTTGTGATTTTATGTGCTATGACAGACATAGATGATGAT GATGATGATGATAATAGCCCTGCTAAGGTGGAAACTGAGGCGGCTAGTGTTGCTGCTGATCCAGAGGACTCTGTCTCCAA AGCTACTAGACCACAAGGAAGGTCTGTACATTGTGTATCCTTTCTATTCATTATGCTGTCTACTTTTTATTTAGCCACGG CGCATGAATTTTGCCATGCTTTGTTTTCAGATACAAGAGAAGAGAGAGGGGGAAGCTCGTCTCTGCATATTCCTTAAAGG ATCTTGAAGGAATTCTTGTAAGTTTCATACACCATTCACTGAACATCTTTAGAACCTGAATAATATGTTTAATATTTCTA GTTTAAAAAAATTATAATGATGTTGACTGTAGAGTTTCATTTAGAGATGAAGAAAGTATCTAGATGCTGATACAGTTTAA TGAATGGAATTCTCTTTTTTTACTTATTTTTGAAACCAGGTCCATGACATCACATGATTTGCCAAAATTTAATGGATTAA TAGCTAAATTTGTGGGACTTGGTGTTGGTTTCTGATATTAGCTTTCATTTTCTGTTTTAATTTTTTCATTTTAACCATGG TTTATTAATTTATTGTGTTCAGTTCAATAAGTTTGCTGCAGTGTTTGATTTAATGAACCTGGAATACCTTTAACTTTTAT GCGGTCATTATCTTCATTTTTGAAGCCTGGTTTGCACGTGACTGGATTTTTGTTATTATTTGCTTTGGTTGATCAGGACA GGACACACATGAAGATATCTGTGTTTCAAACTTGCATTTCATGTGGTTGAGATGTGTATTTTAATGCCTGAGAATGCACA TCTTTGGTCGATTAGAATTGAATGGAACCTCCTCAAATTTATTTACATCAACAAATGATTGAAAATCAGCCTGCCCTTTT GTTTCTTTTATTTGAAAATAAGTAAATAAAAAGAAGATCATGTTACTTAAATGCAAGTATCTGTTTATACTATTAGGATT TCTATAAGCAAGCTTCTTAAATGTATATATTTTTATTTTATTTGATACAAGGTAGTCACTGGTTGTTTACTTCTGTGGTT TTGGTGATAGGTTAAAAAGACTGAACCATCTGAGGGTACGGACAATTCTGATGCTGAATTAAATTTGTTAGAGACATCTG AAACTCAAAATGTTGAAGATGAAGGTATAATCTAGAATTACAGAGATTTTGTGCTATCTATATGATTGTGACATTACACA TGATATCTGAACTTCAGTACCATATTTTACTGTTTCTCTAGTCTCGAACCTTCTCTTTTCACCTCTTTTGTGATGTTTAG TTGTTTACTATGTGGTTGAATATGCATTGGAAATTCTGTAGCTCTTCTACTCATATAAAAGTTCACTGTGAGATGCCCCC AACCCACCGAAAGACCTTCCTATTCATATGGCCCCTCAGACCTCCTCCTGCCCCCCCATTCCTTCCCCCAAAACCAAACA AAGAGATACCCTTTCAGAGAATGATGTTTTTTGTATTTATTTATACTCGCTATACTAGTACAGCCAATTTCCCTTGGTAT ATCTCTATTGTGATTTCACTTGCATTGAAAATGAAAACTTTACTTCTGGGGATATTTTCCCTGATAACCAACTCATTTAT GCAAGGAAAAAGCTGCCATATTTACCTCTTAGGTGCAACCAATTGTTTGTAACACATTCTTTCAATAGGGTTCTGTTTAG AAAGTAAGACACCTGAACTTTCATGTTCTGCACATAATTAATTGCTGACATTAATTATGTGTGTTTGTGTGAATTATTAT AAGTCCAGTTTCCTCAATCAGTTAATATTGCACTGGTACAGGAAGCATATATCCTGTTATCCCTCCAGAGTGGTGGGGCT ATAAGTTTGGTTTTATCTCTGGTGGATATCTTGGAGCAGAATTAAAGAAGAGAAAGTCACTGATATCTGAAAGTGCTAAA AAAAGTGGGACAGAGAGAACTGCATTTTTTGAAGAAGATCAAGAAAATCTCTACAAGCTAGTCCAAGTATGTGACCTCTT GCCTTGTGAAGTTGGTATATGCGATATATAATTCATCAAACATACATGTGATGTTCAATTACATGAAGGATGGTTGCTTG TAATGCTTGACTAATGATAAATGTCAGCATTATGTTTGATATTAATTTCATAGTCAAACCTTATGGCTATAATAGTTAAT TGTTCTACAATTGTTATGCCAGGATAAATCCACAACAGGAAAGCAAGGGCTAGGCATCAAGGACAGGCCCAAGAAAGTAG CTGGATGCTATTTTGAGGGGAAAAAGACATCATTTGATAATAGTGATGAAGAAGATTCTGACACTGATTCCATGGAAAAA CAAACACGTGATGACTTAATTAAAGTAGAAAAGGTTGTTGAATCCAAAGTGAAGCTGAAAAAGTTGTGTAAAAAGATTTT ACAGCAGGTAAGACCTGTTTTTTTGTGTTGCAGTTTTCCTCCTTATTAGTTATTTCATGATTGATTATTCACTCAATTAC AGGTGCCTGAAGAATCACTGAAACTAAAACAACTCAAGGTTCTTATTGAAGAGCGTTCATCAACAATCTTGTCCGACTTT TCTTCAAAAAGAGACGCTATTACTTACTTGAAGCAAAAGGTATGGCTGTCTTAATCACGTATCACTGTTAGACAATTTAT TTTGAAATTTGGGTAGAATGGAACTACATTTCTTCCAGTTCTAGTTCAAATTTGAAGAGTCTTTTTCTTCAGAATACCTA TTACTATGTATATTGCCTGTTTCTTTTGTAGTATTACTTAATAAATTTTGTGCATGGACTTAATAGGAATTGAGGAGAAA TGGGCTAAATTCTTAAAAATATCTTTTGTTGATGGAACTACTTGAAGCCAGTATTGTTATACTTAATAGTGATACTTAAT AGTGATCTGTGTTTGTCGGATTTGGGCATGTTGATTTATTTGTTATCATTTCACTTCCAAGTTTCGCCTACCAAATTGTG ACATGGTTTGGTCTTTGGCTTCAGCTGTCAGGTAGTAGGAAATTTTGTATTGAAGGGAAAAGAGTACGATTGGCATCTAC GAGAAGTTGAATTTTTGATACATTTTTTGCGGCTTTTCTCATTTGAAACCCTCCCGGGGGGTGTTGAGAGAACTGTGCAG ATTGCACAGATTGCACAGCTTACCTTGAATGTTGTAGCAATCTGTCAAGTGTTGACAACATTTTATGAAAATTTAGTTTA TATTTTTTGTTGTAAGTTTAAATTTTGTTTAAGTGAGTGTGTCCATGGATTGGATATTGATATTATCTCTTTGTAACTCA TGAATAATGAAACGTGCTTAATCCAAATTCATTTTGTGTCGGTAAACAAAATATATGAAATTGAGTTAATTGATTACTAT TAGAACATATGGTCTGAAGTTAAAAGCTAGCTGTAGAAAACCCTAATACTAGGTTACAATTAACTTCAATTTGGATAAAA ACTGCAAATGATTTATTTTGATTTGTTCATTATATATTAAATTTCAAGTTCTTATCTTATTTTTCATTCAGAC
CDS sequence (LotjaGi4g1v0430200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGCCTGAAACCCCTCTCTGTTACGTCGGTGTCGCCAGGCGATCCGCTGCTTTTCGCCTCATGAAGCAAATGGG TTGGGAAGAAGGAGAAGGTCTTGGCAAAGAGAAGCAGGGAATCAAAGGATATGTTCGAGTCCAGAACAAACAGGACACTA TTGGTATTGGCTTAGAGAAGCCTAACCAGTGGGCATTTGACACCACACAGTTTGATAGTATCCTCAAGAGATTGAAAGTT CAAGCGCCGGAATCCAAGGACAAAGACATAGATGATGATGATGATGATGATAATAGCCCTGCTAAGGTGGAAACTGAGGC GGCTAGTGTTGCTGCTGATCCAGAGGACTCTGTCTCCAAAGCTACTAGACCACAAGGAAGATACAAGAGAAGAGAGAGGG GGAAGCTCGTCTCTGCATATTCCTTAAAGGATCTTGAAGGAATTCTTGTTAAAAAGACTGAACCATCTGAGGGTACGGAC AATTCTGATGCTGAATTAAATTTGTTAGAGACATCTGAAACTCAAAATGTTGAAGATGAAGGAAGCATATATCCTGTTAT CCCTCCAGAGTGGTGGGGCTATAAGTTTGGTTTTATCTCTGGTGGATATCTTGGAGCAGAATTAAAGAAGAGAAAGTCAC TGATATCTGAAAGTGCTAAAAAAAGTGGGACAGAGAGAACTGCATTTTTTGAAGAAGATCAAGAAAATCTCTACAAGCTA GTCCAAGATAAATCCACAACAGGAAAGCAAGGGCTAGGCATCAAGGACAGGCCCAAGAAAGTAGCTGGATGCTATTTTGA GGGGAAAAAGACATCATTTGATAATAGTGATGAAGAAGATTCTGACACTGATTCCATGGAAAAACAAACACGTGATGACT TAATTAAAGTAGAAAAGGTTGTTGAATCCAAAGTGAAGCTGAAAAAGTTGTGTAAAAAGATTTTACAGCAGGTGCCTGAA GAATCACTGAAACTAAAACAACTCAAGGTTCTTATTGAAGAGCGTTCATCAACAATCTTGTCCGACTTTTCTTCAAAAAG AGACGCTATTACTTACTTGAAGCAAAAGCTGTCAGGTAGTAGGAAATTTTGTATTGAAGGGAAAAGAGTACGATTGGCAT CTACGAGAAGTTGA
Protein sequence (LotjaGi4g1v0430200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPETPLCYVGVARRSAAFRLMKQMGWEEGEGLGKEKQGIKGYVRVQNKQDTIGIGLEKPNQWAFDTTQFDSILKRLKV QAPESKDKDIDDDDDDDNSPAKVETEAASVAADPEDSVSKATRPQGRYKRRERGKLVSAYSLKDLEGILVKKTEPSEGTD NSDAELNLLETSETQNVEDEGSIYPVIPPEWWGYKFGFISGGYLGAELKKRKSLISESAKKSGTERTAFFEEDQENLYKL VQDKSTTGKQGLGIKDRPKKVAGCYFEGKKTSFDNSDEEDSDTDSMEKQTRDDLIKVEKVVESKVKLKKLCKKILQQVPE ESLKLKQLKVLIEERSSTILSDFSSKRDAITYLKQKLSGSRKFCIEGKRVRLASTRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 372 | 372 | 3.2E-101 | – | |
| PANTHER | 1 | 372 | 372 | 3.2E-101 | – | |
| SMART | 13 | 59 | 47 | 8.9E-10 | ||
| ProSiteProfiles | 15 | 61 | 47 | 14.34 | ||
| Pfam | 17 | 58 | 42 | 1.9E-14 | ||
| MobiDBLite | 81 | 130 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0430200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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