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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0431100 |
| Transcript ID | LotjaGi4g1v0431100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT2G46170.1 Reticulon family protein; Swiss-Prot: sp|O82352|RTNLE_ARATH Reticulon-like protein B5; TrEMBL-Plants: tr|B7FIA7|B7FIA7_MEDTR Reticulon-like protein; Found in the gene: LotjaGi4g1v0431100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80523087..80530186) extracted from Lotus japonicus Gifu genome v1.2.
CACATTTCCCAATATTTTGAAAAATATCGCAAGGTAATGGAAATAGCCATTTGCGAAGGGTATAACGAACGCATATTCGT TAAATGTTCGGTCTTAAATTGATGGAGGAATCTCACACCTAACACATTCAACATCTTCCTCACTCTAAATGACAAAATCA TATACGAATCAAATGCAAAATCCTCATGCTCATGGCATTTGCGTCAACCTACCCTACACAAATACAAAAACAAATGTATC ATCACCCACCAATGGACTATGATCCATGTTACTCAATTTAAGAAAATGGTTCATCTTCTGCAATTCGACCTTTGCTGCAT TCTCTGCCTTTTGCGTCTATCTGTATGAAGATTAAATAAGGTAATCCACTTCTACCCCACTCTGTCTCTACCTTTACAGC TCACACTTGAAATCCCTTCAATTTTACCTTAGTTTCCATTAATTTTACAAGAGCTAATACAATTTGTTCTAATTTCTGGG TATCAATTAGAACAATTTATCGATTATACATCAAATTTTAATTATCTAGAACCATAGTAGGCAATGTTTACTGTTCGTTT TTTTATCTTTGCAAAGTTTCTATTTCCTCTGTTTTCCCCTGATACCTCTATGTTTTATATTACTCATTCATGAACTTGTG ATAAAAATGCAAAGATAAGAAGCAATATGCATGTTCAATTAATTGTAGCTATTTTTGTCCTAATGTTCTTTAACTATTTT GTTGATAAAAACTTGCAATATAAGATAATTATATAATCGATAAGTTCCCCTCTGGCCAAATATTGTGTCATTTCACCTGC AGTTCTTTGTTTTACTCACAAAGCTTTGTTATGTTGCAATTTGCAAATATTTGACATGCCAACAACCACAAAAACCAGAC AACTACTCGCCAAATCCACCTGGGTTCGGGCCTTGGGGTTTTACTCTTCTTGTTGGTGAATTGGATTGAAAGTTAAGCAT AAATCAAGTGACAGGCTAACTAATTAACTCAAATCCGTTTCTCTCATGACGGAGACTTTGAAATTAATTTTATCCTGCAC TCTTTTTTGGTCTCTTGCCATCATTATCCATTAGCTACTGTATGTCTGTTCTAGTTGGCGCATATGTTAGTATGTTATGT GTTGGGGGGCTAGATGCTTAAAACTTTGGGACATCTCCACATTGGCCTACTCGAGGGGAAGGTTGTTAGGAATTCAAATG TGTGTAAGAAGGCGCACACCAAAAAGTGTTGAGGTCTCCCAAAGGTTTTATGCAAAACGCGGCCCACTTGTCTTGTGTGA GTACGTTGCAATTCATAATCATAAGAGTGTTATGCTTGGTCCAGGAAAGGCCCCAAAACAAAAGAGTGGATCATAAGATT TGTTTTCCTTCCATGTTTTGTTACTTTTTTTGTCCAAGTTTTCCTTCCATCTGAGTGATTTATATATGATCAAGGTCAGT TGCTTGGCTCAGTTGAATTGTTCTCAGCAATTCATATCATAATGTGTAATGGATGCATGTTAGAAGCACTTTAACAATGT TTTGCGGCATTCTGATAAATAAGTTGAAGATAAGGAATTGTTGAAATATATGTGCTTTTTATGCTTTTTAAAAAGCACAT CTATCCAATCATTTTTTTTATTACCTTCAGCTTTTTTTTCATAAGAATACCGCAAAACGCTGTCAATTAGTGCATGTTTG TGTGATCCCAAATTCTAAATGGACCACCAAAAGAACAGAACATACAAACCCTTAGTCATTGTATATCACGCTATTAATCT TATTTGGACTCCTTTTTTTTTTACTCACAATGATTTCCCCTGGTTGGATCATCGTTGTATTATACTTACCTCTATATTCT TTTCCTCGGGTCTTAAGTTTGTAACTTTCATTGGGGGAGTTTTGAAAATTGAAATGATTGTTTTCTGCTTTTGGTGCTTT ACTTTGCCATGCTTTTCTGTTCACAATGCTTACTTCTTTCTTGAAGTACTTGTGGACGTTTTAATTTTTGTTGTTGTGGT GCTTGGTGTTGAACATGGGGTCATCAATTTCTTTATGTTTGGTTTAGTGTCTGGAAAGGTTTAGTCCAGATAGATGAGGA GATAGAAGAATTAATCAGGGTCCAACCCTTTCCACCACTAAGTTTCGATTAAAAAAAAAGTTTTCCAGCTTTCATTGTGG GGCTAACCCTTTCCAATGATTATGAGTATTCCTGGAGTAGCTAGATTAGCTTGATCATGAGAGAAAAAGTTAATTCAGCT AATTTAGTTTTACTTCTTTTATGAAATTATTTAATCACTTTGTTCCAAATCATTAAATTTTAGATTAAACTGGCTTTTGT TAGTTTTTTATTAATATTTTCAATATTGAAAGTTATCAAAAAGGAATTTTGTTAGTACATCAAATACAATATTTCTCTAG TTTAAATATATTTATACTAATCTTTGTATTACTTTGTTTACTACTCAATACATAGATTAATTGTTACAAAGTTATTTTAA CTCAACAAGTGTCTCGCTTTTGAGTTTATGTAAATACAATTGCATAGACGTATTCAGACAGATTTACCTTTATCTTTCAT AGATGTCCAACTGAAATAAAATTGTCTTGAGGTTTTTAAAAAGAGTTAATTGAATTGAATCCCTTCTGTCTTTTTTCTTG TACAAAATTACTTGTGTAATGTGCCTAACAATTGTCTTATCAAAGGTTAGAGAAAAATTGGTCTTAAGATAAGTATAAGA AAGGGATATAAAAGGAGAAACAAAGTTACACAACAATTTCAGTCCTATCTCCTATGTGTGTGAAATAAAATGCCAAAGTT AAAGCCATGCAATATTGTTACACAGCAATTTCAGTCCTTTCTCCTATGTTTGTAAGTTTTTGTTGTTGTTACTTTCTGCA ATGCTATAAATTTTGCGATGATCCCAAATACTAATGGGCTAATTGAATCGACAATGAGGGGCCCAATTCACAGATCCATA GACACATCCACATCAAAGTGGGACAGTATCCCACATGCCGGCCCCACTTCCTCTCCTGCGAAGATTCCTATTTTGCAAAC AACCAAAGTAAATGCATGAAGCCTAGAATCTTCTCTTTCATCATGGGCCGGGCGGAAAATTTTCAACTGCCTAAGCTGAC TTTAATTTTCTTAAGAGCTAAGTTTTATTTTATAATATTCAATAGCTATAGAAATTTCATATTCAAGGGAATTTAATTTA AAAACCCTGGACCCCACACATACACACAACGTGTTGGAGATTACCGAATACGTGATTTTTTGTTTGTTGAAATGAACCGC GTGTGTGACTCTGAAGCACAGATGACGCTGTTCACATTTATTTATTTTTTGTCGACCAAAAATTCAATTCAATGACAATT TAAATTAAACGGTTGGGCCCCTTGGCGTTTTCGAAACGAGAGATTAGAGTTTTCATCCGGGTCATTTCAACCCGTTTCGG GTCATGGTTCGTTTGAACGGTGGAGATGGCATCGATCATGATGACACTCGCTATTTAGAGATGAAAAATGGAAGAAAGAG GTTACACTCTTTTCTATCTGTGGTTTCTTCGAGACGCTTCTTCTATTCAAATCGGGGATTTAGGGTTTCTTTCCTTCTTC GTCGATCGGTGATTTGGGAACGCGAGATTTCGTCGACATGGCTGACCACAGCGAGCACGATGAACCCAAGGCTGAGTCTC TGATGGAGAAGATTGCAGAGAAGATCCATGGCCATGACTCGTCTTCTTCGTCTGATTCTGACAACGAGAAAGAGAAAGAG AAAAGCAGCTCCTCTCCTTCTTCCGATTTCAAGTCCAAGGTTTCCAGGCTCTTCGGCAGGGAGAAGCCCATTCACCATGT TCTCGGTGGCGGAAAACGTATGCGATTGCCTTTTCCCCTTAATTTTCTGTTCCATTTCTTGCTCTATCGTTTTTTATTCT TCATTTCTAGCAATCTTATGCTTCAATCTATGCGATGATTGTATTTGCTTTGTTTTCAAATTCTGAATCGGGACTTTGTT CTTCGCTCTTCAGTGATTAGAGTTGGTTTATCTAGGGCTTATGAGGTTTAACTTAGATCTTGTTTGTTCTGAATCATCTG ATCGTTGTTCTTATTGTTTCTCTGTTTATTGTTTATGGCACAAATTTTTATTGAATATTGAAGTGATGAACTTAGGATTT AGGGTTTAGATCTGCAGCCCTTGTTACCTAGCTTGTGCTGGATATTTTGTGTTGGATTAATTTTGGATTTGCAAATCAAA TTGAGGGCGTGTTGCATCTTAATTTCTCATAGATCAGCTTTTTGTGTGTTTATTCTTTCTTACATTGAATCATATGCAAC AGAGGCTGATGTTTTCCTGTGGAGAAATAAGAAGATATCAGGGACGGTGCTCGGAGTTGCAACAGTTGTATGGATTCTGT TTGAATTGCTTGAATACCACCTCCTCACTTTGATCTGCCACCTGGCGATACTTGCACTGACTCTATTGTTCTTATGGTCT AATGGATCCTCTTTGATCAACAAGTAAAGTGCTGTTACTACTATAATTGAATTCAGCTTTTTGATTGTCTTCTTATTCTG TTAGCTGATTAAATGTGTTGTGTTGTTTTGTGATCAGGAGTCCGCCAAAGATCCCACAAGTGCACATTCCTGAGGAGCCT GTTTTACAGTTGGCCTCTGCTCTTAGAGCTGATATCAATCGGGCTTTTGCTGTACTAAGGGATATTGCATCCGGCAAGGA TCTCAAGAAGTTCCTCTCAGTATGTTGTTTTCTTTTGTCATTACTGCATTTCTCCATTTGCTTAGAAATTGGTAGTTGAT TAAATGGGGGCAGGTGGATTACTGGTAGGTCTCATGTTGTCAGCTAGGCAACTAACACCACCTTTGTTTGTTGTTGCACA TGTATCTTGGCCAATTGGCTTTATGGCCAATAAATAACCTGGCAGTTTTCTACTACTAGTGAATAGGTGGAGGACATGAG GTTTCCTGCAATGTTGACTGTGCTCATTTCTAACTTTGTAGCTGGTACTAAATATAGTATTTGTTTTTGGTCTTAATTAG GTCATTGCCGGATTATGGGTTTTCTCTGTTGTTGGGAGTTGGACCAACTTCTTGACATTGTTCTACATAGGTAATAAAGC TGTCTTTTTATTCGTTTACTACCTTGAAAGTTCAGACATTAATTTGAATTGTGTGTATTGTGATGTAAATGATTCCTTAA TTTTTGAACAGCTTTTGTTCTGCTCCACACTGTACCTGTGCTCTATGAGAAATATGAAGATCAGGTGGACTCTATCGGTG AGAAGGCACTTCACGAGTTTAAGAAGCAGTATGCAGTGTTTGATGCCAAAGTTTTGAGCAAGATTCCCAAAGGTCCTTTG AAAGATAAAAAGAATGCTTGAAGTGCTGACATATATGTTGTAGTTGGGTTTCATCAACGTTCTGTTAAACTCATATCCAT GATCCCTATCTTGTTATATTTTAGGCTACCTTAGCAAACATTGTTGAAGTGTTTTACATGTTTTTTTGGTTTTCTGCTGC TTACATGTACGCCTCAGAATATCCTATATGCTTATGGATGACTTGTTGTGATGTATTTACATCATTAATATACTCCGCTG CATTTGAATGCTTCATGGGAGTGGGTCATAACTCTCCCCAACTCATGCGCGGTTGAAACTGGTGGAAGTTCCTCCATCCA GGACCGTGCCATGTTTCATCTTTGCCGTTGACTATTTTCAACAAAATTATCAGAGTAGTGATTACCGAATTTGATCATTT GCTTAATTGGCTCATGAGAACCAAGTCAACTACTAATACCTTAGCTGCTGATGAAATCCAAAATTCTGGTTTCTTTTTGC AATTTAAATGAGTTGTCCGTTTTCTGGATTTGACAAATAACTTAAGTTGAATGAGGGTATCTTGAATGTGCGCGAATGTT GATTGTTGATTGAGCGCTTTCTTCTTCTAAAATGGATATTTTTTGTTGAAGTTAACTCGATTGCTGGAATTCAAATAATT ATATACTTTTTCTTTTCACTTTTTACCTTTTGTGCTTGCCACATAAATCTGAATTGGGTAATTATAATTTTAAAAACATG ATATAAGTAAATAAATACGGAGATATGAAATAACTAGAGTAAATATTTGCGGGAAAATAGCAATATTTAGTATATATTTA CTGCATAATATAAATATAATGGTATTTTGTATGCATTAATTAAATTAATAAAAAAATAACGTAAGATATTTATGTAGTAG GTAGGAGGTTTAGATATGTTTGGTCAATTGTTAAAATAGTGAGTTTTCTAGTATTTTTCAAGTATGATCTTGATTGTGTA GGTGACATGTGACGAGAAGAGGGACATCATTGAGTGGCTAAGGTGAAAAGGAATTGAGGAAATCTTTTTAGACTCCAAGT GCATCCACAATCAAGTGGAGTAGGTTCCGAAGAAACAACATATGATTGTTGAAAGTCGAAGCAATGAATGGTACTTTTTC AAGAGAAGGAATGAAGGATAGTATTAGTTAATAAACTCATTTCTGCTTCATACACTTCAAATTGCAGATAAGAATTAAGC AGCAGCAAGGGCAAAAAAAAAATTGAGATTGAACTCGGCCAGCTACAGGAATATAACTATAGAACCGTGGACACAAGCCA CATGACTTCTGGCCTCAGAGCAAGCATGAAAGAAAATCGATAGTGCTTTTAAACTCATCTCTCGCAGAGATTATTCAGTG ATCTCGTCTATGGAGACATCACAGCGGAGATAAACCAAACAAGAAAACCATTCATTTTGGTTTGCAGGATAAGCGTCAGT CATATCCTCTGTTAATTTCTTATTTATGTATATGATATATATTATCTGATAATAATTTTTTTTAATCAAATGATTAATCA AATCAACTTTATTGTGTTGAATATCTAGCCAAATATGCTCATAAATGGATTTACACGTACATTACATGGGTGAGCAAAAG GATAGGTCATTTCCATGATCCAGATTTAAGTGTTGTTGACATTGAATCAATATCTCTTATTTGAGTGATTTCGGAGCTCA ATACAATCCAGTGTTCACACTTAATACATAAAGGAAAAAAATTCAAGAGGCTTTGTTGGG
CDS sequence (LotjaGi4g1v0431100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACCACAGCGAGCACGATGAACCCAAGGCTGAGTCTCTGATGGAGAAGATTGCAGAGAAGATCCATGGCCATGA CTCGTCTTCTTCGTCTGATTCTGACAACGAGAAAGAGAAAGAGAAAAGCAGCTCCTCTCCTTCTTCCGATTTCAAGTCCA AGGTTTCCAGGCTCTTCGGCAGGGAGAAGCCCATTCACCATGTTCTCGGTGGCGGAAAACAGGCTGATGTTTTCCTGTGG AGAAATAAGAAGATATCAGGGACGGTGCTCGGAGTTGCAACAGTTGTATGGATTCTGTTTGAATTGCTTGAATACCACCT CCTCACTTTGATCTGCCACCTGGCGATACTTGCACTGACTCTATTGTTCTTATGGTCTAATGGATCCTCTTTGATCAACA AGAGTCCGCCAAAGATCCCACAAGTGCACATTCCTGAGGAGCCTGTTTTACAGTTGGCCTCTGCTCTTAGAGCTGATATC AATCGGGCTTTTGCTGTACTAAGGGATATTGCATCCGGCAAGGATCTCAAGAAGTTCCTCTCAGTCATTGCCGGATTATG GGTTTTCTCTGTTGTTGGGAGTTGGACCAACTTCTTGACATTGTTCTACATAGCTTTTGTTCTGCTCCACACTGTACCTG TGCTCTATGAGAAATATGAAGATCAGGTGGACTCTATCGGTGAGAAGGCACTTCACGAGTTTAAGAAGCAGTATGCAGTG TTTGATGCCAAAGTTTTGAGCAAGATTCCCAAAGGTCCTTTGAAAGATAAAAAGAATGCTTGA
Protein sequence (LotjaGi4g1v0431100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADHSEHDEPKAESLMEKIAEKIHGHDSSSSSDSDNEKEKEKSSSSPSSDFKSKVSRLFGREKPIHHVLGGGKQADVFLW RNKKISGTVLGVATVVWILFELLEYHLLTLICHLAILALTLLFLWSNGSSLINKSPPKIPQVHIPEEPVLQLASALRADI NRAFAVLRDIASGKDLKKFLSVIAGLWVFSVVGSWTNFLTLFYIAFVLLHTVPVLYEKYEDQVDSIGEKALHEFKKQYAV FDAKVLSKIPKGPLKDKKNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| MobiDBLite | 1 | 53 | 53 | - | – | |
| Phobius | 1 | 83 | 83 | - | – | |
| PANTHER | 1 | 258 | 258 | 1.5E-126 | – | |
| PANTHER | 1 | 258 | 258 | 1.5E-126 | – | |
| ProSiteProfiles | 74 | 260 | 187 | 47.066 | ||
| Pfam | 75 | 229 | 155 | 1.6E-57 | ||
| Phobius | 84 | 100 | 17 | - | – | |
| TMHMM | 85 | 103 | 19 | - | – | |
| Phobius | 101 | 105 | 5 | - | – | |
| Phobius | 106 | 125 | 20 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 126 | 178 | 53 | - | – | |
| Phobius | 179 | 209 | 31 | - | – | |
| TMHMM | 187 | 209 | 23 | - | – | |
| Phobius | 210 | 260 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0431100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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