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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0433300 |
| Transcript ID | LotjaGi4g1v0433300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group family protein; TAIR: AT4G11080.1 HMG (high mobility group) box protein; Swiss-Prot: sp|Q9T012|HMG13_ARATH High mobility group B protein 13; TrEMBL-Plants: tr|A0A0L9TH42|A0A0L9TH42_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0433300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80757105..80760237) extracted from Lotus japonicus Gifu genome v1.2.
CTCCCCCTTTACACCAACGGTCAACTAATCAAGAGGTGCCATATTTGTCACTCCCACATTCATCTTCCATCTCAATCTCT TTCAAATTTGAAAAATCTGACCGTTGCATTCTCCACTATAAAAACGCACTTCGCTCTTCTCCTCATCACACAAACTGTTC TGCTTCGTTTCATTTCACAATCCACAAATTCGCTCGCATCATCCATGGCTGACACAGTTGCAGTTGCTGAAGTACCACCA AAGAGGTCCAGGGGTGGCAGAAAGGCGCTGAAGGAGAAAACCCCGTCAACGAACGAGGCAAACATCATAGCTGGGAAGGT TTCTGAATCCTCTGCCTCTCCAATTTCGAAGAATCAGCAGTCGAAGCAGCAATCATTCGAGAAGGACTTGCTTGAGATGC AGGAGAAGATGCAGCAGATGCGTCTCGAGAAGGAGAAGACTGAGGAGCTCTTGAAGGCCAGGGATGAGCTATTGAAACAG AAGGAGGAAGAGCTTGAAAATCGTGGCCGCGAGCAGGAGAAGCTTCAGGTTGAGCTGAAGAAATTGCAGAAGCTGAAGGA GTTCAAACCTACCATGGTTAGTTGAATTTGAATTCCCCCTTGGTTGTTATCATTTTTATGTTGAATTAGGGTTTTAAATT GGGGGTTTTAGATTAGGGTTAGTTGAATTCAACACATGCAGGGTTTTAAATTAGGGATGAAGAATTGCGAACAAATGCCG GTTGTGATGTCGATGCGGAGATTTCAAAACCAAATTAACCACAATTTAAAATCAAAATGATTTTATGTTGTAATTCTAGT ATTTAATTTATTGATATGCTTGTATAATGTACAGAATTTGCCTATGCTGAAAGAGAAGGAGCAGGATAAGAAGGAGAAGA AGAAGAAGAATGGGGGCTCTGAGACAAAAAGGCCTTCTCCACCTTACATTTTATGGATGAAAGACCAATGGAGTGAGGTA AAGCAATGAAATGAATCCTTTTGAATTATTGAAATTTACTTCCTTCAAACCTCAATTGGACTTGGGTGTTTGTGGTTACT GGTTTTTATCTAATGATGGTGGCTTCATCATGCAGATTAAGAAATCGAACCCCGAGGCCGAATTTAAGGAAATTTCAAAC ATGCTTGGGGCTAAATGGAAGACAGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAGATACCATGCAGAAAAAGAGGC TTACCTGCTGGTGACTGCAAAGGAAAAACGTGAGATTGAGGCAATGAAGCTCTTGGAAGAGGAGCACAAGCAGAAGACTG CTATGGAATTGCTTGAACAGTATATGCAGTTTAAACAAGAGACAGAGAAAGAGGGCAAGAAGAACAAGTAAATTTTACTC TTTTCTGCTATGATGTTGAGTTAACCTTTCATTACTTGGTTACTGATTAATTGTATTTGTACTTTCACAGGAAAGAGAAG GATCCATTGAAACCAAAGCACCCTATGTCAGCTTATTTCTTGTTCACTAATGAAAGAAGGGCAGCTCTTCTTGCTGAGAA CATGAAGGTCTTGGAGGTAATTGAGTATAGCATGATTGTATCAGCTTATTTTCTCTAAGAATAAATTCTGTCACTTAGAA GCTACTCTGAACACAGCTTCTCAGAATTAACTTTGGCAGTAGAATCAATTCTTCAAGGATATCAAAACATCAATCATGAT TCATGAATGAAGAACACTAATTTTATAGGGTATGCTGTGTTTCAGGTTCCCAAGGTCACAGCTGAAGAGTGGAAAAACAT GACAGAAGAACAAAAGAGGCCTTATGAAGAGGTTTTTGCCCTTAAGTTTCATTCATTATTTGGTCATGAACTTCACTCTC TTTTAGTGGCTTAATTTTTTTACTAGTAACTTAATTTGAAACTTGCAGATGGCAAAGAAGAACAAGGAGAATTATGCTCT GGAAATGGAGGCTTATAAGCAGAAAAAGGATGAGGAGGCTGCTAATCTCATGAAGGAAGAGGAGGAGCATATGAAACTTC AGAAACAGGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACTGAAATCATTATCAAGGTTTTTGCCCTTTTCCACTTA GTGTCTTTCCTTGTTGATTTCCAGTTACCATTGTGGCTAATCCACCTAAGCATCCTGCAGAAAACAAAACAGAAGAAGAA ACAGAACAAGGAGGATAAGATTTCTGATCCAAACAGGCCTAAGAGACCTCCATCCTCATTCCTCATATTCAGAAATGAAG CAAGGAAAAGCTTACAGGAGGAACGACCAGGAGTCAGTAACCCCACCCTCAACGCACTTGTTTCCTTGAAGTGGAAGGTA CTATAGCTAATTCTTTGTGCATGTTTCATAATTGATTCTCACAAACAAAAATTGAACCAAACATGTAATTTCTATCTAAT TTTGATACTTGTTTACAACATCATTTCCTCTTTAACATATTCCTGTGGTTCCCATTTGGCTATAGGAACTGAGTGAGGAA GAAAAACAATTGTGGAATGGCAAAGCATCTGAAGCAATGGAAGCATACAAGAAGGAATTGGAGGAATACAACAAATCCCT TGCAAGCACTGAAGCAACAAACTGAGACAGTAAAGAAAAGAGCCCCCCCCCCCCCCCCCCCTTGGACTTTTTGGACTTTT GCATGTTCAAATTTGTATTGAACATGTGTTTGCTTGCTAGCTGCAATTCTCTCTAGTCTCTAGAATTGGGTGTTGACTTT GTAAAATTAGAATGTTTAATTTCATTTAGAATCGTTCTAAATTTGTCATTTCAACAAAAACTCCTTATGAATTTGGTTAA TAAGACTGAAGGATTTTAAAAAATATCAATTCTTCTTCAAGTAGCTTATCATAAACAGCAGGAAAACTGGAAAAGTACTA TTATTTTTTCCTTTCAAAAAAAGGACTATTATTGAAGCAGGATCCGGTAAATGTCTTTTTTCATGGAATGTAACTTACTA ACCTCTAACCATTACCCATACATGTAGTTCTATACTAATAATTGAGAAATTTTATCAATATTCTCGAACCTCAATACATA TTTAGCGGATGTTTTTGTATTTTCCAATTGTCATCCTTGTGATGATTTGGTAATTAGTAATTACCAGAGTATTCTCGAAC CTCAATACAAGTG
CDS sequence (LotjaGi4g1v0433300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACACAGTTGCAGTTGCTGAAGTACCACCAAAGAGGTCCAGGGGTGGCAGAAAGGCGCTGAAGGAGAAAACCCC GTCAACGAACGAGGCAAACATCATAGCTGGGAAGGTTTCTGAATCCTCTGCCTCTCCAATTTCGAAGAATCAGCAGTCGA AGCAGCAATCATTCGAGAAGGACTTGCTTGAGATGCAGGAGAAGATGCAGCAGATGCGTCTCGAGAAGGAGAAGACTGAG GAGCTCTTGAAGGCCAGGGATGAGCTATTGAAACAGAAGGAGGAAGAGCTTGAAAATCGTGGCCGCGAGCAGGAGAAGCT TCAGGTTGAGCTGAAGAAATTGCAGAAGCTGAAGGAGTTCAAACCTACCATGAATTTGCCTATGCTGAAAGAGAAGGAGC AGGATAAGAAGGAGAAGAAGAAGAAGAATGGGGGCTCTGAGACAAAAAGGCCTTCTCCACCTTACATTTTATGGATGAAA GACCAATGGAGTGAGATTAAGAAATCGAACCCCGAGGCCGAATTTAAGGAAATTTCAAACATGCTTGGGGCTAAATGGAA GACAGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAGATACCATGCAGAAAAAGAGGCTTACCTGCTGGTGACTGCAA AGGAAAAACGTGAGATTGAGGCAATGAAGCTCTTGGAAGAGGAGCACAAGCAGAAGACTGCTATGGAATTGCTTGAACAG TATATGCAGTTTAAACAAGAGACAGAGAAAGAGGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCC TATGTCAGCTTATTTCTTGTTCACTAATGAAAGAAGGGCAGCTCTTCTTGCTGAGAACATGAAGGTCTTGGAGGTTCCCA AGGTCACAGCTGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGGCCTTATGAAGAGATGGCAAAGAAGAACAAGGAG AATTATGCTCTGGAAATGGAGGCTTATAAGCAGAAAAAGGATGAGGAGGCTGCTAATCTCATGAAGGAAGAGGAGGAGCA TATGAAACTTCAGAAACAGGAAGCCTTGCAACTGCTGAAGAAGAAGGAGAAAACTGAAATCATTATCAAGAAAACAAAAC AGAAGAAGAAACAGAACAAGGAGGATAAGATTTCTGATCCAAACAGGCCTAAGAGACCTCCATCCTCATTCCTCATATTC AGAAATGAAGCAAGGAAAAGCTTACAGGAGGAACGACCAGGAGTCAGTAACCCCACCCTCAACGCACTTGTTTCCTTGAA GTGGAAGGAACTGAGTGAGGAAGAAAAACAATTGTGGAATGGCAAAGCATCTGAAGCAATGGAAGCATACAAGAAGGAAT TGGAGGAATACAACAAATCCCTTGCAAGCACTGAAGCAACAAACTGA
Protein sequence (LotjaGi4g1v0433300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADTVAVAEVPPKRSRGGRKALKEKTPSTNEANIIAGKVSESSASPISKNQQSKQQSFEKDLLEMQEKMQQMRLEKEKTE ELLKARDELLKQKEEELENRGREQEKLQVELKKLQKLKEFKPTMNLPMLKEKEQDKKEKKKKNGGSETKRPSPPYILWMK DQWSEIKKSNPEAEFKEISNMLGAKWKTVSAEEKKPYEERYHAEKEAYLLVTAKEKREIEAMKLLEEEHKQKTAMELLEQ YMQFKQETEKEGKKNKKEKDPLKPKHPMSAYFLFTNERRAALLAENMKVLEVPKVTAEEWKNMTEEQKRPYEEMAKKNKE NYALEMEAYKQKKDEEAANLMKEEEEHMKLQKQEALQLLKKKEKTEIIIKKTKQKKKQNKEDKISDPNRPKRPPSSFLIF RNEARKSLQEERPGVSNPTLNALVSLKWKELSEEEKQLWNGKASEAMEAYKKELEEYNKSLASTEATN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 80 | 80 | - | – | |
| PANTHER | 1 | 466 | 466 | 1.4E-207 | – | |
| PANTHER | 1 | 466 | 466 | 1.4E-207 | – | |
| MobiDBLite | 27 | 59 | 33 | - | – | |
| Coils | 55 | 117 | 63 | - | – | |
| MobiDBLite | 60 | 80 | 21 | - | – | |
| MobiDBLite | 120 | 154 | 35 | - | – | |
| MobiDBLite | 120 | 147 | 28 | - | – | |
| SUPERFAMILY | 135 | 210 | 76 | 9.82E-19 | ||
| Gene3D | 141 | 232 | 92 | 2.2E-18 | ||
| SMART | 147 | 217 | 71 | 3.0E-15 | ||
| Pfam | 148 | 209 | 62 | 1.3E-16 | ||
| ProSiteProfiles | 148 | 216 | 69 | 15.48 | ||
| CDD | 149 | 208 | 60 | 1.47348E-12 | – | |
| MobiDBLite | 244 | 266 | 23 | - | – | |
| MobiDBLite | 244 | 265 | 22 | - | – | |
| Gene3D | 246 | 346 | 101 | 1.5E-22 | ||
| SUPERFAMILY | 251 | 336 | 86 | 4.19E-22 | ||
| SMART | 263 | 331 | 69 | 7.1E-20 | ||
| Pfam | 264 | 330 | 67 | 2.3E-16 | ||
| CDD | 264 | 327 | 64 | 1.27258E-12 | – | |
| ProSiteProfiles | 264 | 330 | 67 | 18.388 | ||
| Coils | 312 | 362 | 51 | - | – | |
| MobiDBLite | 367 | 417 | 51 | - | – | |
| Gene3D | 369 | 468 | 100 | 1.0E-21 | ||
| SUPERFAMILY | 384 | 464 | 81 | 6.02E-22 | ||
| SMART | 389 | 459 | 71 | 6.0E-18 | ||
| Pfam | 390 | 458 | 69 | 3.0E-16 | ||
| CDD | 390 | 455 | 66 | 9.58779E-12 | – | |
| ProSiteProfiles | 390 | 458 | 69 | 17.403 | ||
| Coils | 440 | 467 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0433300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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