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LotjaGi4g1v0435800.2

Overview

Field Value
Gene ID LotjaGi4g1v0435800
Transcript ID LotjaGi4g1v0435800.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description UDP-glucose 4-epimerase family protein; TAIR: AT4G10960.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 5; Swiss-Prot: sp|O65781|GALE2_CYATE UDP-glucose 4-epimerase GEPI48; TrEMBL-Plants: tr|A0A1J7FZR9|A0A1J7FZR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0435800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:80894963..80898288) extracted from Lotus japonicus Gifu genome v1.2.

CAAAATTCTCGCCTTCTCACAAAACGTCCTGGCGCGTAACAAACTCTCATTTTTTCTATAAAACCTTCTCTTCCGATACA GAGCTATCGTAACCGTTTTTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTTTCAATCAATTATGGCAACC CAAACCGTTCTCGTTACCGGCGGTGCCGGTTACATCGGCAGCCACACCGTCCTCCAGCTTCTGCTCGGCGGTTTCAACGC CGTCGTCGTTGATAACCTCGACAATTCCTCCGAAGCCGCTATCCATAGAGTCAAGGACCTCGCCGGAGAATTCGCCGGTA ACCTTTCCTTTCACAAGGTACACGGCGCATTCTCTCGTTGTTCCACCGTTTTCGATTATAACTCAATTTTGATTGGTTGT TACTTGTTCGGTCCTCGTGATTTCATTATTATTATTATAATTTTGCTTAGGGATGATCGTAATCGTAATTTGTTTCTAAT TAGTTTTTTGACAGTTTTTTTGGGATTTATTTAATTAACAAATGTTTTAATTTATTTATTTATTTATTCATGGTGCTTTG AGAGTTTCTATTTTTTCATGCTGAATTCTTTGTGGTGGGCCCAACCAACAGGTAAAATTCACAAAAGCAAAAGTTTTGTG TGCTTTATTCCTTGAAATTAAAGGTCGGTCATAGTTTTGAATTGTGTGTTTTCATAATGATTTAGTGTGTGTTTTGAAAT ATAAGCGCACAAAAGCAACTTCCATTAGCTTTTAGGGTTATCTGTCGTGATTTTCGCGTCACCGTGTACACAAACATGCT TTTAGAATGTTTCACAAATGGCCTGACAAGTTCAAATGCACTTTTAGATGTGATGTGAGTTTAGTTGATTCTGTTATTGA ATCCAATGTTGCTCTTTTAGGTTATGATTATGTTAGGTATGCTTTCAGTTATCAGTATTAAGTATTAGACCCAAAGAAAG TAATCAGTGTTAGTATTAGACCTCATTTTATTATTATTATGCTGAACTGATTGTTTTCATTGTATATTTTCCCTCTACAG TTGGACCTCCGTGACAGAGATGCACTGGAGAAGGTTTTTGCTTCTACAAAGTATGGATTTGTGCTGAAGTTTCTGTAATT TTAATAAGGATTGCGCTTTTGCCTGCCTTTCGCTTTCCCTTGTAGTTTTATTTGAGCCCTGATATTGCAAGTTTTAACTG TTTCTTATATCTGTATCTTTTTGTCCAGGTTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTCGGTGAAAGTGTG CAGAAACCGCTGCTTTACTATGACAACAACTTGATTGGGACAATTGTTCTACTTGAAGTCATGGCTGCCCATGGATGCAA GAAGGTAATAACTGGTCATGTACATTTAGTAGCCATTAGCCCATTAATTTGCATTGTACAATTGTTTGTTGAGACAATTC AGCAGAAACTTCATGTTTAGATGGATGGAATTGAGTTATTTCTTCTTCTAGTACCTTCATGGGTTACAAATAGTTTTGTC TTGATGCTGCAATCTGGTTTAACACTGCTATATTTCTTGTATGATTTCAGCTTGTGTTCTCATCTTCGGCCACTGTATAT GGATGGCCTAAGGAGGTCCCGTGTACTGAAGAGTTCCCTTTGTCAGCAGCAAATCCATATGGACGAACCAAGGTATGATA GGAAACTATTAACAGTACTTGTTAAAACTTGGATAGTATAACTGTAGCTGATGGCAGCTTGGAAAAAAATCAGTCTTGAT TTTAATTTCATATTTTGGGCAATTAGCTAGGAACTTGGAATTGGGATTGTGGTCCTGTACAAAACACCTTTATCATTTGT TAAACAACAATGATATTTCCACTTTCAGTGTATCATTACTTTTTTCTTGAGCTAGGAGAAAAAAAAAAAGAAAACGTGGT TTTAACATATTTCAAGGAGGTCGAATGGTGTGGAAATGTCATGGTTGTTTGTAAATCATTACTAATTGCAATATTTCTCT TCGATTCTAGCAGTGATATCTAATGAGAGTTCTGTCTTACAGCTTATCATCGAGGAAATTTGTCGGGATATCTACCGTGC AGAAGAGGAATGGAAAATTATACTGCTGAGATACTTTAATCCTGTTGGTGCACATCCTAGTGGTAATATTGGCGAGGATC CTCGTGGAATTCCAAACAACCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGTCCTGCATTGACAGTTTTTGGA ACAGATTATAGTACAAGTGATGGCACTGGAGTATGTTATCTTTTTTTCTTTTTTATGTTTTAGTGAACATTTTTCCTTGA AAAATTGCAACAAAGCTCACACTGCCTCACGCCCTATCTACATAAGCCCCCACTTCCCCTCATTGGAACCATCTATTTCA ATTTCTTAAGATCTACCTTTGATTTATTCTGTGATCTGACAGGATAGACCTTATCTTTTTCTCAGGTTCGCGATTACATT CATGTTGTTGATTTAGCAGATGGGCACATAGCTGCATTGCATAAACTAGATGATCCTAAAATAGGTACTATTCCAAATTC ATCACTGTCTTCTAATAATTTATTCAGTGTGTTTGTTTTAGTAAGCTCTGGCAGTAGCCAATGGTTTTGACTTTTGAACT GATGTTTAATTACTACAAGTAATTGTTAATTTTTCTGTTTGTTCTTTTCTCAGATTTTCTTTAATGTTATGTTGTTTTGG TAAAATCTCATTCTGGGCTTGTACAGGCTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGG TTAAAGCTTTTGAACAGGCCTCTGGAAAGGTAACTAATTGATGATTCTATTCCTGGTTTTATATTTGTGTTGCCATCGTA TGCAGTCAATTTGTGCCATTCTTTCTTTTTCTTCCTTAGATTTTGAATTTGACAGGGTAACCATTCATGTGAGACATACT TAGTCTTTTAAGTATCATTTTATTGTATATTATGATTTAAGCTTTCTTTACCAGATGACTAACAATTTTTTAATGTTCAG AAAATTCCACTTGTAACGGCTGATCGGAGACCTGGAGATGCTGAAATTGTTTATGCATCAACTGAAAAAGCAGAAAGAGA ACTGAACTGGAAGTAAGTGTTACTTTGCTTTGCTATCAAGTGAATTATTAAGTGGCATCTATATTACTCATTTTCCACCT TTTGACTCACAAATTTATCTTCTTTGTAGGGCTAAATATGGAATCGATGAAATGTGTCGTGATCAATGGAACTGGGCTAG CAAAAACCCTTATGGCTATGGAGGATCTGAAGATTCTTCTAATTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0435800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACCCAAACCGTTCTCGTTACCGGCGGTGCCGGTTACATCGGCAGCCACACCGTCCTCCAGCTTCTGCTCGGCGG TTTCAACGCCGTCGTCGTTGATAACCTCGACAATTCCTCCGAAGCCGCTATCCATAGAGTCAAGGACCTCGCCGGAGAAT TCGCCGGTAACCTTTCCTTTCACAAGTTGGACCTCCGTGACAGAGATGCACTGGAGAAGGTTTTTGCTTCTACAAAGTTT GATGCTGTCATACATTTTGCTGGACTGAAAGCAGTCGGTGAAAGTGTGCAGAAACCGCTGCTTTACTATGACAACAACTT GATTGGGACAATTGTTCTACTTGAAGTCATGGCTGCCCATGGATGCAAGAAGCTTGTGTTCTCATCTTCGGCCACTGTAT ATGGATGGCCTAAGGAGGTCCCGTGTACTGAAGAGTTCCCTTTGTCAGCAGCAAATCCATATGGACGAACCAAGCTTATC ATCGAGGAAATTTGTCGGGATATCTACCGTGCAGAAGAGGAATGGAAAATTATACTGCTGAGATACTTTAATCCTGTTGG TGCACATCCTAGTGGTAATATTGGCGAGGATCCTCGTGGAATTCCAAACAACCTCATGCCATTTGTTCAGCAAGTAGCAG TTGGCAGACGTCCTGCATTGACAGTTTTTGGAACAGATTATAGTACAAGTGATGGCACTGGAGTTCGCGATTACATTCAT GTTGTTGATTTAGCAGATGGGCACATAGCTGCATTGCATAAACTAGATGATCCTAAAATAGGCTGTGAGGTTTATAACTT GGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAAAGCTTTTGAACAGGCCTCTGGAAAGAAAATTCCACTTGTAA CGGCTGATCGGAGACCTGGAGATGCTGAAATTGTTTATGCATCAACTGAAAAAGCAGAAAGAGAACTGAACTGGAAGGCT AAATATGGAATCGATGAAATGTGTCGTGATCAATGGAACTGGGCTAGCAAAAACCCTTATGGCTATGGAGGATCTGAAGA TTCTTCTAATTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0435800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATQTVLVTGGAGYIGSHTVLQLLLGGFNAVVVDNLDNSSEAAIHRVKDLAGEFAGNLSFHKLDLRDRDALEKVFASTKF DAVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLI IEEICRDIYRAEEEWKIILLRYFNPVGAHPSGNIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGTDYSTSDGTGVRDYIH VVDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLVTADRRPGDAEIVYASTEKAERELNWKA KYGIDEMCRDQWNWASKNPYGYGGSEDSSN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43725:SF17
1 350 350 3.0E-229 –
PANTHER
PTHR43725
1 350 350 3.0E-229 –
SUPERFAMILY
SSF51735
1 341 341 1.15E-98
IPR036291
CDD
cd05247
5 334 330 0.0
IPR005886
Gene3D
G3DSA:3.40.50.720
6 280 275 1.5E-146 –
TIGRFAM
TIGR01179
6 340 335 4.3E-132
IPR005886
Pfam
PF16363
7 330 324 2.1E-67
IPR016040
Gene3D
G3DSA:3.90.25.10
199 335 137 1.5E-146 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003978
Molecular function UDP-glucose 4-epimerase activity Catalysis of the reaction: UDP-glucose = UDP-galactose.
Subterm of
GO:0006012
Biological process Galactose metabolic process The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0435800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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