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LotjaGi4g1v0436100.1

Overview

Field Value
Gene ID LotjaGi4g1v0436100
Transcript ID LotjaGi4g1v0436100.1
Lotus japonicus genome version Gifu v1.2
Description Late embryogenesis abundant hydroxyproline-rich glycoprotein; TAIR: AT4G23930.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q6DST1|Y1465_ARATH Late embryogenesis abundant protein At1g64065; TrEMBL-Plants: tr|A0A072TWH9|A0A072TWH9_MEDTR Late embryogenesis abundant hydroxyproline-rich glycoprotein; Found in the gene: LotjaGi4g1v0436100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:80910891..80912143) extracted from Lotus japonicus Gifu genome v1.2.

CAAAGAAACAAAGAAGGTGACATGGTCCTACTCCTACCATCAATTCATTCATTCTAGCTACTAGCTAGTGTTTGCATACA TTCACATTCACATTTGCATCCACATAACATTAATCAACATAGATCCACTCTCACTCCACCACCACCACCACCACCACCAC CACCGGCGGCCATGGCGGATGTACACCCCACCACCATACCAGTAACCAGCCGGCCAAAGCGGCCACGGCCACCGTCAGGT CGCACCAACCTCGCCTCATGTGTCGTGGCCACCATCTTCTTGATCTTCATCGTCATCGTCATCCTCATAGTCTACTACAC CGTCTTCAAGCCACAAGACCCCAAGATCGCCGTCAGCGGCGTCCAGTTCCCCTCATTCTCCGTCGCAAACGGCACCGTCA ACTTCACCTTCTCCCAGTACGCCTCCGTCAAGAACCCTAACCGCGCCGCCTTCTCCCACTACGACAGCTCCCTTCAGCTC CTCTACTCCGGCAACCAGGTCGGCTTCATGTTCATCCCCGCCGGCGAGATCGACGCCGGCCGGACACAATACATGGCCGC CACCTTCAACGTCCAGTCGTTCCCCCTTTCAGCCCCGGCGGGTCTGGGTCCCACGCTGGCCAACGGCGACGGCGCCGGGT TCGGCATCGGGTTGAGGGTTCAGCCCACGATGGAGATCGAGTCGAGGTTGGAGATGGCGGGGCGCGTGAGGGTTTTGCAT TTCTTCACCCACCGCGTGGTGGCCAGAGCTGGTTGCAGAGTCGCAATCGCCGTCACTGATGGATCTGTGTTAGGTTTTCA CTGCTAATTCTTTTTTCTTTTTACTTTTTTTTTGTTTGTAAGAGTAGAGTTCATAGCAGTAACTAGTGATATATTACTGG AATTGTTGTTAATTGTTAGTCAGGTTAAGCAGCAATGGAGGCATCAAAATCTAAATTGTAAAGATGATTTTTCTTTTTTC CTACTTCATTGCCAAGTTTTAGGGTGTGTTTGGATAAAAACATTGTTAAAATCTGCTTGTGAGTTCCAATCCAGAAAAAG AAAGTACAATGAAGTAATTGTTCTCTTACTCTAAAATTCATTTCAAGTTTGTTTTAATTTGTTACCACACTTGCAATTTT AGACATTAGTTCATCTTTGGAGACTTGCAATTTTAGACATTAGTTCATCTTTGGATAAACAGACAAAGAGCTAAGAGAAG TTGTTTCTATTCATCGTGATTTTTCACCATCTATGTAAACATAAACATGTATT 

CDS sequence (LotjaGi4g1v0436100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGATGTACACCCCACCACCATACCAGTAACCAGCCGGCCAAAGCGGCCACGGCCACCGTCAGGTCGCACCAACCT CGCCTCATGTGTCGTGGCCACCATCTTCTTGATCTTCATCGTCATCGTCATCCTCATAGTCTACTACACCGTCTTCAAGC CACAAGACCCCAAGATCGCCGTCAGCGGCGTCCAGTTCCCCTCATTCTCCGTCGCAAACGGCACCGTCAACTTCACCTTC TCCCAGTACGCCTCCGTCAAGAACCCTAACCGCGCCGCCTTCTCCCACTACGACAGCTCCCTTCAGCTCCTCTACTCCGG CAACCAGGTCGGCTTCATGTTCATCCCCGCCGGCGAGATCGACGCCGGCCGGACACAATACATGGCCGCCACCTTCAACG TCCAGTCGTTCCCCCTTTCAGCCCCGGCGGGTCTGGGTCCCACGCTGGCCAACGGCGACGGCGCCGGGTTCGGCATCGGG TTGAGGGTTCAGCCCACGATGGAGATCGAGTCGAGGTTGGAGATGGCGGGGCGCGTGAGGGTTTTGCATTTCTTCACCCA CCGCGTGGTGGCCAGAGCTGGTTGCAGAGTCGCAATCGCCGTCACTGATGGATCTGTGTTAGGTTTTCACTGCTAA 

Protein sequence (LotjaGi4g1v0436100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADVHPTTIPVTSRPKRPRPPSGRTNLASCVVATIFLIFIVIVILIVYYTVFKPQDPKIAVSGVQFPSFSVANGTVNFTF SQYASVKNPNRAAFSHYDSSLQLLYSGNQVGFMFIPAGEIDAGRTQYMAATFNVQSFPLSAPAGLGPTLANGDGAGFGIG LRVQPTMEIESRLEMAGRVRVLHFFTHRVVARAGCRVAIAVTDGSVLGFHC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 25 25 -
MobiDBLite 1 23 23 -
PANTHER 16 211 196 1.7E-105
PANTHER 16 211 196 1.7E-105
Phobius 26 49 24 -
TMHMM 27 49 23 -
SUPERFAMILY 37 137 101 6.8E-7
Phobius 50 211 162 -
Pfam 85 189 105 1.8E-7

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0436100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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