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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0436100 |
| Transcript ID | LotjaGi4g1v0436100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant hydroxyproline-rich glycoprotein; TAIR: AT4G23930.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q6DST1|Y1465_ARATH Late embryogenesis abundant protein At1g64065; TrEMBL-Plants: tr|A0A072TWH9|A0A072TWH9_MEDTR Late embryogenesis abundant hydroxyproline-rich glycoprotein; Found in the gene: LotjaGi4g1v0436100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80910891..80912143) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGAAACAAAGAAGGTGACATGGTCCTACTCCTACCATCAATTCATTCATTCTAGCTACTAGCTAGTGTTTGCATACA TTCACATTCACATTTGCATCCACATAACATTAATCAACATAGATCCACTCTCACTCCACCACCACCACCACCACCACCAC CACCGGCGGCCATGGCGGATGTACACCCCACCACCATACCAGTAACCAGCCGGCCAAAGCGGCCACGGCCACCGTCAGGT CGCACCAACCTCGCCTCATGTGTCGTGGCCACCATCTTCTTGATCTTCATCGTCATCGTCATCCTCATAGTCTACTACAC CGTCTTCAAGCCACAAGACCCCAAGATCGCCGTCAGCGGCGTCCAGTTCCCCTCATTCTCCGTCGCAAACGGCACCGTCA ACTTCACCTTCTCCCAGTACGCCTCCGTCAAGAACCCTAACCGCGCCGCCTTCTCCCACTACGACAGCTCCCTTCAGCTC CTCTACTCCGGCAACCAGGTCGGCTTCATGTTCATCCCCGCCGGCGAGATCGACGCCGGCCGGACACAATACATGGCCGC CACCTTCAACGTCCAGTCGTTCCCCCTTTCAGCCCCGGCGGGTCTGGGTCCCACGCTGGCCAACGGCGACGGCGCCGGGT TCGGCATCGGGTTGAGGGTTCAGCCCACGATGGAGATCGAGTCGAGGTTGGAGATGGCGGGGCGCGTGAGGGTTTTGCAT TTCTTCACCCACCGCGTGGTGGCCAGAGCTGGTTGCAGAGTCGCAATCGCCGTCACTGATGGATCTGTGTTAGGTTTTCA CTGCTAATTCTTTTTTCTTTTTACTTTTTTTTTGTTTGTAAGAGTAGAGTTCATAGCAGTAACTAGTGATATATTACTGG AATTGTTGTTAATTGTTAGTCAGGTTAAGCAGCAATGGAGGCATCAAAATCTAAATTGTAAAGATGATTTTTCTTTTTTC CTACTTCATTGCCAAGTTTTAGGGTGTGTTTGGATAAAAACATTGTTAAAATCTGCTTGTGAGTTCCAATCCAGAAAAAG AAAGTACAATGAAGTAATTGTTCTCTTACTCTAAAATTCATTTCAAGTTTGTTTTAATTTGTTACCACACTTGCAATTTT AGACATTAGTTCATCTTTGGAGACTTGCAATTTTAGACATTAGTTCATCTTTGGATAAACAGACAAAGAGCTAAGAGAAG TTGTTTCTATTCATCGTGATTTTTCACCATCTATGTAAACATAAACATGTATT
CDS sequence (LotjaGi4g1v0436100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGATGTACACCCCACCACCATACCAGTAACCAGCCGGCCAAAGCGGCCACGGCCACCGTCAGGTCGCACCAACCT CGCCTCATGTGTCGTGGCCACCATCTTCTTGATCTTCATCGTCATCGTCATCCTCATAGTCTACTACACCGTCTTCAAGC CACAAGACCCCAAGATCGCCGTCAGCGGCGTCCAGTTCCCCTCATTCTCCGTCGCAAACGGCACCGTCAACTTCACCTTC TCCCAGTACGCCTCCGTCAAGAACCCTAACCGCGCCGCCTTCTCCCACTACGACAGCTCCCTTCAGCTCCTCTACTCCGG CAACCAGGTCGGCTTCATGTTCATCCCCGCCGGCGAGATCGACGCCGGCCGGACACAATACATGGCCGCCACCTTCAACG TCCAGTCGTTCCCCCTTTCAGCCCCGGCGGGTCTGGGTCCCACGCTGGCCAACGGCGACGGCGCCGGGTTCGGCATCGGG TTGAGGGTTCAGCCCACGATGGAGATCGAGTCGAGGTTGGAGATGGCGGGGCGCGTGAGGGTTTTGCATTTCTTCACCCA CCGCGTGGTGGCCAGAGCTGGTTGCAGAGTCGCAATCGCCGTCACTGATGGATCTGTGTTAGGTTTTCACTGCTAA
Protein sequence (LotjaGi4g1v0436100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADVHPTTIPVTSRPKRPRPPSGRTNLASCVVATIFLIFIVIVILIVYYTVFKPQDPKIAVSGVQFPSFSVANGTVNFTF SQYASVKNPNRAAFSHYDSSLQLLYSGNQVGFMFIPAGEIDAGRTQYMAATFNVQSFPLSAPAGLGPTLANGDGAGFGIG LRVQPTMEIESRLEMAGRVRVLHFFTHRVVARAGCRVAIAVTDGSVLGFHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 16 | 211 | 196 | 1.7E-105 | – | |
| PANTHER | 16 | 211 | 196 | 1.7E-105 | – | |
| Phobius | 26 | 49 | 24 | - | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| SUPERFAMILY | 37 | 137 | 101 | 6.8E-7 | – | |
| Phobius | 50 | 211 | 162 | - | – | |
| Pfam | 85 | 189 | 105 | 1.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0436100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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