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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0436800 |
| Transcript ID | LotjaGi4g1v0436800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein SKIP8; TAIR: AT4G10925.1 Nuclear transport factor 2 (NTF2) family protein; Swiss-Prot: sp|Q93YV9|SKIP8_ARATH F-box protein SKIP8; TrEMBL-Plants: tr|A0A151U861|A0A151U861_CAJCA F-box protein SKIP8; Found in the gene: LotjaGi4g1v0436800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80983026..80985940) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGATTTTCTCTGCCTTATCGGAACCCTTCCTCGTCGCCGTTATCGTAACCGCTCTCTGCTTCTTCCTCGCACTCTT CTCTCTTCTCCGCCCATTCTCCTTCCCCTCTTCTCTCAGGAAGAAATCCACTCCGCCCAGAAAACACTGCGATTGCGCCC TTTCCGATTCCGCTGCTGCCGTGCCCTACTTGAACGGCGGTTCCGCTGAAATGCTGGAGGCGAGCCACGCTCCGGTGGCG CCTGTCGTGTTGGCTGAGCGACGGACGGGGTCGTCGATGATGGAGGAATTGGTTCCGGAGATTACGACGCATGCGTTGAG TTACTTGGATTATCCCAGCTTGTGTCGGCTTTCGATGACCAATTCGTTGATGCGGAAGGCTGCTAATGATGATAATGCCT GGAAGGCCCTTTATCACAAGGTGAATTCAATTCTCATGCCCTTTTTCTTTCTTCTTTTGAATTGATTCAAAGGTTTATTA TCATGCTAGGTTTTTCCAATTTTTTATGCCCTCTTTGTAGACTAGTTATAGTGCTACTGAGTTTCCACCATGGATGTTGA TTACCTACTGTCTGGCCATGACTGCATGTTTTCTGTTTGTATCATATAGCATGTTTAGAGACAAGTTTGAATCATTTAGT GAGTTTTCTTTTCAATGACATTTAATTCAAAACTTCGCATGCAATTTTTCTTTTTATTGTTTGGATTTTGGAATTTGGCT GGTTTTACTATGCCACCCTAGGGCTTTGAATTAGAAAGCAAGAAACAGTATTAAGGTTCCGCTAGTCACTTCTATTTGGA ACAATTGCTGGACAGTATGTTCGAAAGTATGAAGAAATAGAGGCATTACCTGTATTGGCAAACACCTTATATGAGGGGGT GAAGGGGATTGGCTCGTTGAGGCTTCAACTTACGTCGCTTCTCCTCATATGTTGTTAATTTTTTTTTTTTTTGCAAGTAT GCCATTTGTACAAGTAATAAACTGTGAGTGAGAGTATCGTCCAACTAGGAATTCTGAACCAATTAGCGAATCATATAGGG AAAATTATTGGCACAAGTCAAATGTTGAACATTACAACCTGCTAAAAATATGGATTGAGTTGTGGCTGCTTACTGAGCAA AGCCTGTTTTGATGTTACGCCTTTCTCTGTGTAAACTCCTTCAAACATCCTGTTTCTTCTCTTCATTGATCTACAAGTTT AAAAGTGTAGTAGTAGACTGATAAAATTATATAGGGGAAGTCATTATGTAGCATGATAAAAGCATAAAGCAAATTGACAT GAGCCTTATATATACTCTTGAGAATGTGGGTGATTACAGATTAACTACATTGGATTCTTTAGATGAGTTTTATCATTCTC ATTTTGCCCTATGTATCTTCAGTAATAATGCTTTGAAATTCTGTTTTTAGGACTTCACCTGGGAACAAGATAGTATTACT CCAGTGAATGGGTGGAAGGCATACTATGCTGCAACAAGAGCAATTGTGAATATTAATACAGAATTCTTCAACATCATCAG AGATAAGTCTATTCCAGCAATGAGTCGTTTTTGGCTAAATGCGGATTACGTAAAGTGCATTCATGCCTCGGGAGAACTCT TTTCAGGGTATGAGTTTGTATCTTGAGTAATTGGTCTACTTTTCTGTCATAAATTGTCCATTTTGCATAGAAAGGACCTG CGTGATATATGCTGTGTGATAGGCACCGGAGGAGATTGAGCGAAAGAGAGATAGAAGAACTGAGTAGGTAAACTGTATTA TTGTGTAACTGAGACTTTACAAGGTAACACTGGCTTTCCAGAGGCCAGACTCCAACAATAGTGATTCTACCGAATGTCCA ATTAACTAACCTCCCTTCCCCTTTTAAGGGAAGATCTGGTATTGATAGCTAACCACCGAGAATATCTCTAACTAACTCTA TATCCCACATGACCTATAGGTCAATACACAAGAGTTCTAAGCTCTCCCCCTCCTCTGATATACTTTCCTAATAATAGGCC TAGCCCTATCTTTATCACTGTGGTACTTGAAGAGATTATTTATTAGGTTCCGGACATATCGAATTGGGAAAAGTTCTTGG ATGCATTTAGGTGACTTAGGTCAGTGATTTTTTTTTTTTTTGCATTAGTAAAATAGACCTGGACTGGTCTCCTATTTAAA TCAGAAAGAAGAGGATGCTTTGATACCTTAGTAAAGTTTCAGTCCTTATTGCAGATGTTTTTGACTTTTTGGAGATAAGA AACCATCTCATCATTTGGTTCCCAGTAGGTATCTGCTCCCTCTTTTCCTCCCCTTTTTATACTATTAAGGTAGGGTGTGT TCTTGTTCTTCCTAGTGATGTAGCAATCTCATATGGTGTTCAAAACTCCTATTCTTTTAGCATAGATATTTTGACTGAAC CCTCTAGTATACTAGTTTAAGGTTCATATTACTTCTTTTTGGTTGTTTTCGAGCTTGATACTCCCGAGATGCAAGCCGTT TGAACATAGGATATAATGTATATTTCTTTCCTGGAAAAAGATCCTATGTTTTGAAATTCTTGCAAGCTTGTGAAATTATA TAGAATTATAGGCATATTTTAATTTTATTTTACTTTAATACAATTTCTGCCATACTTGTGAGTAAAAATAGTGCTGTAAT CTGATCATCCTTGTTACAGGTATAACGCGGTAATGCAGAGTTGGCAGCTTGTATTCAACTGGGAGCAAGGATTGAACTTT CAGGTTCGGGATGTACGTGCTCGAGTGTTGACTGACATGGCTTGGGTTACTATGAAAACATTTGTTGACATGGACACAGG GCCATTCAACGTAACCAATGTCTTTGAGTTCCATAATGGACGGTGGTATATGGTTCATCATCACAGCTCTGTGATGAATG GGGAGGTGGATCAATAATAGATTGTGCATGGATAA
CDS sequence (LotjaGi4g1v0436800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTTTCTCTGCCTTATCGGAACCCTTCCTCGTCGCCGTTATCGTAACCGCTCTCTGCTTCTTCCTCGCACTCTT CTCTCTTCTCCGCCCATTCTCCTTCCCCTCTTCTCTCAGGAAGAAATCCACTCCGCCCAGAAAACACTGCGATTGCGCCC TTTCCGATTCCGCTGCTGCCGTGCCCTACTTGAACGGCGGTTCCGCTGAAATGCTGGAGGCGAGCCACGCTCCGGTGGCG CCTGTCGTGTTGGCTGAGCGACGGACGGGGTCGTCGATGATGGAGGAATTGGTTCCGGAGATTACGACGCATGCGTTGAG TTACTTGGATTATCCCAGCTTGTGTCGGCTTTCGATGACCAATTCGTTGATGCGGAAGGCTGCTAATGATGATAATGCCT GGAAGGCCCTTTATCACAAGGACTTCACCTGGGAACAAGATAGTATTACTCCAGTGAATGGGTGGAAGGCATACTATGCT GCAACAAGAGCAATTGTGAATATTAATACAGAATTCTTCAACATCATCAGAGATAAGTCTATTCCAGCAATGAGTCGTTT TTGGCTAAATGCGGATTACGTAAAGTGCATTCATGCCTCGGGAGAACTCTTTTCAGGGTATAACGCGGTAATGCAGAGTT GGCAGCTTGTATTCAACTGGGAGCAAGGATTGAACTTTCAGGTTCGGGATGTACGTGCTCGAGTGTTGACTGACATGGCT TGGGTTACTATGAAAACATTTGTTGACATGGACACAGGGCCATTCAACGTAACCAATGTCTTTGAGTTCCATAATGGACG GTGGTATATGGTTCATCATCACAGCTCTGTGATGAATGGGGAGGTGGATCAATAA
Protein sequence (LotjaGi4g1v0436800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIFSALSEPFLVAVIVTALCFFLALFSLLRPFSFPSSLRKKSTPPRKHCDCALSDSAAAVPYLNGGSAEMLEASHAPVA PVVLAERRTGSSMMEELVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTWEQDSITPVNGWKAYYA ATRAIVNINTEFFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVFNWEQGLNFQVRDVRARVLTDMA WVTMKTFVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVMNGEVDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 6 | 283 | 278 | 4.4E-147 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| Phobius | 34 | 284 | 251 | - | – | |
| SUPERFAMILY | 89 | 175 | 87 | 1.8E-14 | ||
| ProSiteProfiles | 91 | 137 | 47 | 8.65 | ||
| Gene3D | 93 | 135 | 43 | 3.1E-6 | – | |
| Gene3D | 156 | 284 | 129 | 1.8E-32 | – | |
| SUPERFAMILY | 160 | 278 | 119 | 4.88E-28 | ||
| Pfam | 165 | 279 | 115 | 3.0E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0436800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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