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LotjaGi4g1v0439300.1

Overview

Field Value
Gene ID LotjaGi4g1v0439300
Transcript ID LotjaGi4g1v0439300.1
Lotus japonicus genome version Gifu v1.2
Description tRNA pseudouridine synthase A; TAIR: AT5G35400.1 Pseudouridine synthase family protein; Swiss-Prot: sp|B0SC03|TRUA_LEPBA tRNA pseudouridine synthase A; TrEMBL-Plants: tr|I1KPQ1|I1KPQ1_SOYBN tRNA pseudouridine synthase; Found in the gene: LotjaGi4g1v0439300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:81296479..81301408) extracted from Lotus japonicus Gifu genome v1.2.

TAATCACGCCGCGCCTCCTTTCGCAGTTGCAATTGTCTCGGGAGGGAAACACACACACACGAATGCTTAGTTGCCAAACA CATCTTCGTTGGTTCACACACGCACGCTCTCCTTCCGCAACACCAACACACTCACGGACACGGTGGCTAATCTCTTCTTC AATGGATAACCACCGCGAAACGGAAAATTATGCGCATTACAACCACACCGATCCCTGTAAACACGCACGATGGAACGCTA GGTTCGGTAACATAGTCGTTTTGATTTCATATTCCAATTTTTCATGGCAACTTTTTTTTCTTTTCTCAATAATTCAGTGA TGTTTTGGCTTGACAGGGAGAGCTACGAGTTTATGTATGCAAGGCCTTGGCAACGAGTCAATGATTTTTACTTGAATGCT GTTCTTGGCAACTTGTCTTTGCCTCTTCTTTTTGGAGCTGAGGTGCATTTGAATTAACCCCTAATTTATGATTCCAGTAC TTCAAATTCATGCTTAGTTCTGTAACTTCAGAGATTTGTTTGTTTATTGTTGTTCTTAATTTGTGTGAACTTCTGACAGA AAATTCATGATCATAATAATGAGCCTGGAATTCCAGCAGTTTCTGATAAACCTGAGTTTGAAAGTGTTGCGTCGCGAGGT CGCGGTGGGAGGTGGGCAAGGCTGACATTCAAAATTGTTCTTTCATACCACGGAGGTTCTTTTGACGGATGGCAAAAGCA GCCAGGCTTGAACACTGTCCAAAGGCAAGTTCCTCTTCTTATAACTTCTGCAGTCTTGTGTCTGCTGCAAACTGCATGTC TTTGGAAACAACAGTTATTTGTTCATGGCTATTATAAATTGTTGGATAAGATGTCTCCTTACAGGTTTTATATTTATGCA ACATTGTGGTTTTGGTCACATCACATCACATAACATGCCTTTACAAATTAGTTTTCTCCCATTGTACTTTATTATATGTA TATAAAAAATCCATGACCTATTAGTTGTCCTTTTAATTGCATATTTACATATTTGACAAAACTGGGATGCAATATAACAT GGTACATTACTACATTCTTTCCTTTGCTGCTTCATATTCCCCCTGCTGGGTTCAAAACACGCATGCCTTTTATTTGTGAT AATATTAACATTTATGGTAAACAAAGGTATGTTAAAATAAATTCTGCTTCTTTCCCTTTTACTCATTTCCTGACGCAGTG TAATAGAAGGGCCGCTTGGTACATTTGTTGATGAAAATAAAACTCAACAGCTCAAGGACAGAGGTTTGCCAATTGAAGGT TCCGTTACTGTTGCTGGTCGTACAGACAAAGGAGTGACAGCCCTTCAACAAGTTTGTTCTTTCTGTAAGCCATTCTGTTC CTGGCAATGCTTTTGCTCTGCACAAATCTTTCGATATATCAATTGTTTGTCAGACACTCAACATGAAAAACGACAGAACT GGATCCCAAAGTATCTTATAAGCACAGTTTTTGTTTTAGCATTTTTTGACCAAATGCTTATGTGCTTACAATTATACAAT CAACAGTTTATCATCTGGAAATTTCTGACTTCAAATATAGTTATGCCTGACTTAAACAGGTTATCAATAACAGATATCTA ACTTTGAGTTTTAAAGGTATCCTTTCTCCAATTCTTTAGTGGAATGTTTCAATGTTCCTATATATAGAATAAAAAACCCT AAATTATTCTTTTATGAACACAAGTACATAGTCTTGTAGGAAATAGCTCCAAATATGTAGGGCTATGTTTCATTGTAGCA GTTTGTGGCCATGCATTGAAATGAAAGGAAATGTTTACAAGTTGGTTAAATTTTTTTTTTTGAGGCAAGCAGGGGGTGGG GTTCATTTTAGTATATTGTTGGAATTGGATTTGTTTAAGCTTTTCCCCCCTGACCTGGGGTTCATTATGTGCAGACACTT GGAAGAAGGATGTTAAACCAAGAGATATTGAAGATGCAATCTATCATGCAGCACCAGGAAAGCTAAGGGTCATATCAGTT TCTGAGGTAATATCCTTCTTTAAAATAATATATAATATGAAACTAGTGTTTGATAGAATTATCAGTTTCCATGAATTTGA AGAAAAGAAAAAGAAAAAAATTGTTTACAGGTTGTGTTCCTCATTATTCACAGAACATTTAATCTGATAACAATTATGAA TGTGACTTATTGTAGGTATCACGTGCCTTTCATCCCAATTTCTCTGCCAAATGGAGGCGTTACCTTTATATTTTCCCACT CACTGATGGAGGATATAAGGACCAAAGCAGTGGCAGTGGAGAGTTTTTTGACACACTTAGAAATAATGAAATTCATGATT CTTCTAGCAAGGATGATTTAGAAAATGAAACTAAATCTTACATGTTCAGTGTAAGCAAGGTAAACCGGCTTTTACAAAAA TTAGAAGGAAAATTGCTATCCTACAAGATGTTTGCTCGTGATACAAAAGCTTCAAGAAATGAGTAAGAACTTGAATTTCT ATCTCCATTCAGTATTAACTTCACTTCCTCATTAGTCTGCAGCGCGAATTATAGTCACATAATAGACGCCATAATGCATA TTTTCTGTGGATGGTGTAAACTGTAAAGTATTGAAATAAGTGCTAAGATAGAGACATGGAGACTAGCCTTGGAAGCATAT GGTTTCGCTTAAGTAGAAGTGAAACAAAGTATTCGGAATGCAAGTTTAGTTGAAGGTATAGAAATCCTAGGTTAGAGGTG AAAATTGGAGATACCATATAACATGTCTTATGATTCAAGTACCTTGAGTCCATCATAAAAAAAATTGTGGAGATAAAGGA AGATACAAACCATAGGACCTAAGTAGGGTGGAATGAAGGAATGCTTTGGGTGTTATTTGTGCTAAAAAAGTTCTACTAAA GCTTATAGGAAAGTCTTATAGCACAACCATACGATCTGCAATGTTGCATGAGGTTAGCTGTTGGGCGATAAAGAGTCAAC AAGAAAGTAAGATTAATGTTGTAGAGATGAGCATCTTATGATGAATGACTGATTACACAAAGTTAATTGGGGTAGTCCCA ATGTATAAAAATGGTATAGTTTTATCTTTAGGTGCCGTGTATTGGATATATGTGGAGAAGACCGGTAGAAGCATTGGTAT GCTGGGTAGACTGATAGGCTAATAGTTAGAGGTAGAGGAAGATCAAGAAAAACTATATGTCAAGCCATTAAGAGTGAGTA GATTTAAATGGTCTATTATTAGACTTGATTCGTAGCGGGACCTTATGGCTTCATTTGGTCTATGTACTGACTCCATCTAG TGGGGAAAAACTTTGATTATTGTGGTGTAGACTATTATTTGAAATTGAACCATAATAAATGTTGTACATTATTTCAGATG AATTAGTTCTATATATTTTGTGAGCACTTGAGGAATAGCTGGCTCAGCTATAGATTTCCTTGGTACTGTCATTCACTAAA TTGACTTACGACTGTCTGTCTATTTCAGAGGTCCACCAACTGAGTGTTTTCTTTACCATGCTCGAGCTATCGAAGCCAGA TTACCTTTAGCTGTAAGTATTTTTTTTTTTAATATTTATTTACCTTGTAACCGTTTTTTTTCTTCTTTCATTTATCCCTT GCAAACCTTGACCATTTAGCCCATTCTGGATTGAAATGATTGAACTTGGTATTTCTAGTGTTGGCTGGTTAGCCTACACA CAAAACATGTTTGGTGCGTCCAAGGATGGCTTTTTAGCGTGCCTGTAGGGGTAGACTCAGAAAACAAGTAGATTCTGCAA TTTGTCCATGGCTTTTAATATTAACATATTTCATCTGTTCATATTATTGCTTCATTCTTTTCTCAAGGGTATGCATGACA TGATGTTAAAAAAATGTTTTCATGGATTTTCCTATGAAATATATATTTATGTCAAGAAACTATCCTTGTGTTGGAGTTTA TATTTATACTATTCAAAAGCCACATGAATCAGTATGTCCTTAAGTTTATGTGTATTTACTGCACCATCTAAGTCATTTTT TTAAGTCTTCCTTGTCCTTCATCCTGAAAAATGGTATTTAATCACTTCTAGCTATCTTTAACTCAGACTTCTCAGTTTTA CTTAGTACTTTGGTGGTTGTTTTTTAGAAAGCTTTACTGACTGATGTTTAATTTCGCTCGTAACGTTTCTAGGATAATGA CGAAGAAACAAGGGTTATGTGTATTGAGCTGGTAGCTAATCGCTTTTTACGCAGGGTAAGTGCTGTATATTTTTGCTTTC CTTAAAGGAAACATGTACGTTGAAGGTTTTGGCTTCTCTGATGTGAACCTATTACCAAAACGTAATTGAATCTGTTGATG TTAACTCAAAAAGTAAAGCATCAATAGTTTTATTCGAAGGTTAATGTAACCTAATATGAATATAAGCTGTTATGTCAACA TGGCTAGGAGTAAGACCTTTATCATTCTAAATGTTAACAAGTTGATGCTTCAAATATTTTATGTAGATGGTTCGAGTGCT TGTGGCAACCTCAATTAGAGAAGCTGCAGCTGGTGCTGAAGATGATGCGTTGTTAAAGCTCATGGATGCCACGTGTAGGC GTGCCACTGCTCCTCCAGCACCCCCTGATGGCCTATGTCTTGTTGATGTAGGGTACGCAGAATTTGATCCCGAAAAATGC TTCATCACGGACGAGTAGGGAAATTGTTTGGAAGTCGTAGTAAAATGAATACCTATTAGAGATCTTCTTTTAATGATGAC TATACTATGGGATCAACTATTTAAAGAAAAAACAGTGAGGGAGCAAATTGAGTAGGGATGCATTTGTGTAGAGTAAAAAT GTTGGAAAGTAACTCCAATGGAAGGAAAAAAGGAGGTAGAAAATTGAGATGATTTTTTCGATTGTTTTGTCGTAGAAATT GAAGGGAAAGAAAATTAATATTTTTATCTGTTTTTGTTTGATTGTGTAGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0439300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTAGTTGCCAAACACATCTTCGTTGGTTCACACACGCACGCTCTCCTTCCGCAACACCAACACACTCACGGACACG GTGGCTAATCTCTTCTTCAATGGATAACCACCGCGAAACGGAAAATTATGCGCATTACAACCACACCGATCCCTGTAAAC ACGCACGATGGAACGCTAGGGAGAGCTACGAGTTTATGTATGCAAGGCCTTGGCAACGAGTCAATGATTTTTACTTGAAT GCTGTTCTTGGCAACTTGTCTTTGCCTCTTCTTTTTGGAGCTGAGAAAATTCATGATCATAATAATGAGCCTGGAATTCC AGCAGTTTCTGATAAACCTGAGTTTGAAAGTGTTGCGTCGCGAGGTCGCGGTGGGAGGTGGGCAAGGCTGACATTCAAAA TTGTTCTTTCATACCACGGAGGTTCTTTTGACGGATGGCAAAAGCAGCCAGGCTTGAACACTGTCCAAAGTGTAATAGAA GGGCCGCTTGGTACATTTGTTGATGAAAATAAAACTCAACAGCTCAAGGACAGAGGTTTGCCAATTGAAGGTTCCGTTAC TGTTGCTGGTCGTACAGACAAAGGAGTGACAGCCCTTCAACAAGTTTGTTCTTTCTACACTTGGAAGAAGGATGTTAAAC CAAGAGATATTGAAGATGCAATCTATCATGCAGCACCAGGAAAGCTAAGGGTCATATCAGTTTCTGAGGTATCACGTGCC TTTCATCCCAATTTCTCTGCCAAATGGAGGCGTTACCTTTATATTTTCCCACTCACTGATGGAGGATATAAGGACCAAAG CAGTGGCAGTGGAGAGTTTTTTGACACACTTAGAAATAATGAAATTCATGATTCTTCTAGCAAGGATGATTTAGAAAATG AAACTAAATCTTACATGTTCAGTGTAAGCAAGGTAAACCGGCTTTTACAAAAATTAGAAGGAAAATTGCTATCCTACAAG ATGTTTGCTCGTGATACAAAAGCTTCAAGAAATGAAGGTCCACCAACTGAGTGTTTTCTTTACCATGCTCGAGCTATCGA AGCCAGATTACCTTTAGCTGATAATGACGAAGAAACAAGGGTTATGTGTATTGAGCTGGTAGCTAATCGCTTTTTACGCA GGATGGTTCGAGTGCTTGTGGCAACCTCAATTAGAGAAGCTGCAGCTGGTGCTGAAGATGATGCGTTGTTAAAGCTCATG GATGCCACGTGTAGGCGTGCCACTGCTCCTCCAGCACCCCCTGATGGCCTATGTCTTGTTGATGTAGGGTACGCAGAATT TGATCCCGAAAAATGCTTCATCACGGACGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0439300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSCQTHLRWFTHARSPSATPTHSRTRWLISSSMDNHRETENYAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLN AVLGNLSLPLLFGAEKIHDHNNEPGIPAVSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIE GPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRA FHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFFDTLRNNEIHDSSSKDDLENETKSYMFSVSKVNRLLQKLEGKLLSYK MFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVRVLVATSIREAAAGAEDDALLKLM DATCRRATAPPAPPDGLCLVDVGYAEFDPEKCFITDE
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11142:SF10
107 434 328 7.7E-153 –
PANTHER
PTHR11142
107 434 328 7.7E-153
IPR001406
Gene3D
G3DSA:3.30.70.580
128 247 120 4.2E-23 –
SUPERFAMILY
SSF55120
131 427 297 9.35E-45
IPR020103
Gene3D
G3DSA:3.30.70.660
280 426 147 4.6E-13
IPR020095
Pfam
PF01416
356 424 69 3.0E-7
IPR020097

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0439300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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