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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0440200 |
| Transcript ID | LotjaGi4g1v0440200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1,4-alpha-glucan branching enzyme GlgB; TAIR: AT2G39930.1 isoamylase 1; Swiss-Prot: sp|O04196|ISOA1_ARATH Isoamylase 1, chloroplastic; TrEMBL-Plants: tr|A0A151TKF6|A0A151TKF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0440200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81377927..81384987) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTATATGGATACAAATTTGATGGCAAGTTTTCTCCTATTGAGGGACACTACTATGACTCTTCTCTTATACTATTGGA CCCTTATGCAAAAGTTAGTGGCTCTGAACCCTTCTTCTACTTATTCTTCTTTTAGTTACTAGTAATATATAAATCAACAC TAGTGAAGAGCGATACATGATGAAAACCCCATCTATGGTTAATTATTGGTTTTCTATAAATATCACATTGCAGTGGACCC TAATAATATGCTACTTATCTGTCTAGGCAGTTATAAGCAGAGGAGAGTTTGGGTCTTTGGGACCTGATGGTAACTGCTGG CCCCAAATGGCTGGCATGGTACCTTCTAATGATGATGAGGTACATTATTTATTATGGTTATTTACTCGAACTTTTCAAAA GCTATATTTCACTTTATTTTTACTTGGTATGCAACTTGTTTAGTTTGACTGGGAAGGAGACTTGCCTCTGAAGTACCCAC AAAAGGATCTTATTATATATGAAATGCATGTGCGAGGGTTCACAAAGCACGAGTCAAGCAAGACCAAGTTTCCTGGTACA TATCTTGGTGTAGTGGAGAAGCTTGACCACTTAAAGGTGAAGTTTCGGATCATTTTCTAAATTACTTAAAAAAGTTCCTT TTGGCATTCTACCAATGGCTATTATGCGAAATTAGTCTAATAGTTTTATAATTTCTTTGTGAAAAATTGTTGATTCTATA TATTTATCACGTGGACAGAAAACGTAATTCATCAAAAGAGGAAAATTACATTACACAGAAGATAATGTGTCTTCTAAAAG GAAGAAATATAAATCAAATAACAGTGCCCACAACTGGTCAATGTATCCTCATGATGGATGCCCTTGACATAAAGCCTTGA ACCAAACGCCAAAACGAAGCCATAATGTTCATTTTGTTAATTTGATGCGATAGAAGAGACAGGGTAGACTTGAGTCAAGA AACTTCCAGCATCTTTCTGTCATCAATAATACTGAATAATCAAATTGCACACTTCTGAATCTAATTGTGATGAAATCGTC ACTTGTAGAAGGAAGGACACATGTATCCTCATTTAAGGCAAAGGAAAGGCATATTCTTATGCAGTGAGTCATCAATGCAT GATAGTAAAGGAACTTGATTATAGAGTCAAAGTGGACTTTGGGCTGAGTCATACTGTCATCCATACTTTTGGCCAATGAG TTTCCCAACCCTGGTGCCTCATGTTATTGCTGATCAAAATTATACCATATAGTTAAGGTCCACTGAAATGGTCATCATCC ATACAATTCCCCCATACTGTCAGATCTACAATATTGATATTTCATGAACTTGGGATTGCATTTTTTTATTTTTACACTGC ATTCATTGTAGTACTGCATAACGCATACATGAATGCATAAACTGTTAACTAGTTCATAGTCTAACTGTTTTCATTTGGTG TTTATCATTTTGCAGGAACTTGGGGTAAATTGTATCGAATTATTGCCATGTCATGAGTTCAACGAGCTGGAGTACTTCAG TTACAATTCTGTACAAGGGGACTATAGGTAAAAGAGATATTTGCTGACAAAATCATGATAATTTTATCACTGACTTCTTG TTATATTGTAATCTTCTGAAATGCTAATCATAGTTTGCCATTTATTATAATATTTGAAATAGCTTTTTAACCTTTGATGC CTTGTATCTTTCAAAGTATGATGTCATGATCTTTCTTCCAATTTAATAATTTAATCTGATCAACTCATGATCCAATTGGG TGGTACTCTCTACATTTGTGGCTTTGTAAAATTCTTATTTTGGCTTCTCTGTAAGTTTATCTCAAGTATATGATAGTGCT GAATCCTTTTTCTTTTAGGGTCAATTTTTGGGGGTATTCAACTGTCAACTACTTCTCACCAATGATCAGATACTCATCTG CTGGTATACAAAACTGTGGCCGTGACGGGATAAATGAAGTTAAGTTCCTGATCAAAGAGGCGCACAAACGGGGAATAGAG GTAACCAGGATTACATATTATGTCATTTTGTCAATTGTTTTTTGTTTCTTTGTTGAGAAAAATTGAAACCAAAAGTAGGT GAAAGACTAGCTATACTGCCTAAGGTCTCAGCCCTGTCCCAAGATGGCAATAGAACTCAGCTTAGGAAAGAACGAATAGA GTGATCACTTGAACACTCAGTTCTCTCCCTATAGGCCAATCCCAATATCTTCCCTAGCATTACGATGGGCCTTTCTCTCC CCTTTTTACTACTGCACATCCTCCTGACCAGCCAACTAACCCTTCACTTTGGGTCAGTTAGGTATTCATACAACAGTCCC TATCATAACAGTGACAGTCACTATCAAGAGTTTTGATCACCTGCAAGGCTGCAACTATCCTCTTTCTCCTCTCATAGACT CTTGACTCTAGTTCCATTCCTATGATTCTTCTTTTAATTATTTTTGAAAAAAATAAACTATCCTTTCATTGCTGTATTGT TGGAACAGGTTATCATGGATGTTGTTTTCAACCATACAGCTGAAGGGAATGAGAATGGTCCCATTATTTCTTTCAGAGGT GTAGACAACAGTATCTATTACATGATAGCACCCAAGGTATTCCTCATTATTTTTGTTTCCTCTTTCAGCTGGTTGGTTGG AATTTTTGAAACCTTGGAGGAACTCAAAGGCTGGTAAAATGTAAGAAAGGCGTTCGTGGTAATATTTCCAAAATAACTAC TAAACTAATTAACATTGATCAAATAGTGGTTAGTCTGTAACCACATATTAACTTAACTATCACCTGAGTGATTATATATT CCTAAACTGGAACCACTCACAAAAATTCTTTTATTTTTGTAATTACCCAAAAGAAAAGCATATGTATCGTCTAATGCAAA TTTATTTACATTTAATAGATAAGAATCCATTTAACTTTAATTGTTTATTCTCATTTATTTGAATGGTAGCAGTGTTATGG ATTAGATTAGCTGTTTCCAGCTCTGAAAAGTAGGTCAACACATTATGCATACAGAAGTTTTGGGACACTACATGGTACCA AATTCCAAACTTTAAAGAAGAAAGAAAGTTATTTGAGTGTGCTGCCTAAATCCAATGTTTTTTTTTTATCAAGTTAGTAA TTTCTACTTTCCAGCATGACATCAGCTCAGGATCTGTATTCTGCTGACATGAATAAAACGCCTATTTTGTTTAAAATCTG CATCTTTACTTCTTGAGGCTTGTTGTTATTGTGCAGTTTGGATTTTTATGGCTCTATGGCTATTTCAAATTTATTTATTC TTGTGTGTTTTGTTACTTCTAAGCCATGCACAATGTTAACTTAACCTACTTCCATGTTTTAGGGGGAGTTCTATAACTAT TCAGGATGTGGGAACACATTAAATTGCAACCATCCAGTTGTTCGCCAATTTATAGTGGACTGCTTAAGGTACTCTTACAA TGATTACCAGCGGTGTGACTTTAAATATATCACTTCTAACATATTTGTTTATTGTTATTTGCTCTGGGGTCACAAATTGC TAACATATTAGATTGAAGGCCTTACTATTTGTCTACCATGCAACAGATATTGGGTAACAGAAATGCATGTGGATGGTTTT CGCTTCGATCTTGCTTCTATTATGACCAGGAGTAGCAGGTTATATACCCTCAAGTGTATTGTTGCTCAAATTTTGCTGGA GTCTGTTGCATCTTTCTGTTCTTATTTTCCTTTTCTTTGTTTGTCACCAGTCTCTGGAATGGAGTTAATGTATTTGGTAC TTCAATAGAAGGTGACTTGCTGGCAACTGGAACCCCTCTAGTTAGCCCACCATTAATTGACTTGATCAGTAACGATCCAA TACTTCACGGAGTGAAGGTTTCTCAACTTGCATACTCTCTTAAAGTTTTCTTCACTCATTTGGAAGCAGTTAGCTAATAT GCTAAGTTTCTTGATTTCCTCTTTATAGCTTATAGCTGAAGCTTGGGATGCTGGAGGCCTCTACCAAGTTGGCACTTTCC CTCACTGGGGTATTTGGTCAGAATGGAATGGGAAGGTCAGTGCAGACATGCAGCTGTTGGATTCATAACTCCATTTATTA CGCTGTACTGAAAATAAGACGATGTGGGAGCACAGCTTGAATGTAACTAACAAGTTTGTTTCAGAAAGAGAACTTGATAA CACAACACAATACTGAAGTATCATAAGTTCATCACATCTTGGCATCATGCATATCTAACCTTGTAGCCTTTTATGTGAAG TTGTATGAATAATTGCTTGAGATGTAATTTTATGAAAATAACCTGGTGTCAACCTAAATGAACTTGTCAACACTGGAATG CAGTTAAACTTTGCATGTAATGTATGTTTGTCTCCAATATTTCTTCACTATTACTTTCTCAAATTGTAAGTTCTGATGGA ATCAGCTATTTGATGAGTGAATTACTGTAATCTAAACAGCAATGCCATGACTTTTTCAAATGTTCAATCCTGATGAGGAA TTTTTTTGGACAATGGACTCAGGATAGAAGTAGTAAATAAATTTGCGTGGATACACTAGAATGATTTTTCTCCTTTCTTA GATCATTCTACAACATGTATAATTACTAGGACAAGTGAAGGAGTGATCATATGCACACATTAATCAGAACCTTCTTGTTA CCTTATGCAAGCTAACTATAGACTGTTTTCCTTTGATGAGATGTGTTGATTTCCTCTACATGCACCTGTGTGTTTATTCT TTGCTTCCCATGTAAGTAAATCTCTTTAACTAAATGATTGGCTGTTGCATACTCACCAATTTTTTAAATAATATGTTATC TACGAATTGTATATTATAATAGCAATTTTTTTGCTATGCATGAACTATTTAATGTGCAAATCTTGCATTTTGCAGTATAG AGACACAGTGCGTCAGTTTGTAAAAGGTACAGATGGCTTTGCTGGAGCATTTGCTGAATGCCTTTGTGGGAGTCCTAATG TATATCAGGTTTGTCTGTTGTCTCATGTCACACTACAATAGAAGATTCTTTTGGATGTAAACTCCCCCATCTATTCTTAT TATTGCTGTCGACTTGTCGTAGTCTTTACTGTTGGAACTTGGAATGGTTACCCGTTACTGTTGTTTCAATTTTTTTACAT GTAAACATCCTATTTTGCTGTCTTTGAACTTGCTCAATATATTTTACTCTCAGGGGATTAGCATTTATTTCAGCTAAATT TTAGGTTCCGGTCTTTTGTGTGGTTGACATTTTTCTTTTATCTTGGGCACAGGGTGGTGGAAGAAAACCATGGAACAGTA TTAACTTTGTATGTACTCATGATGGCTTCACTCTAGCTGACTTGGTGACCTATAACAACAAGCATAACTTGCCAAATGGA GAAGACAATAATGATGGAGAAAATCATAATAATAGCTGGAACTGTGGACAGGTAGATGTTTAGAACCCTGCTTGATATTT GGTCTTATCATAGAACCTTGACTTGTTGTGGGTTTGCTGTCTATTTTCTCTTATATGTGTCAGTGTATTGTGCATGCATA TCTGAGCTTGATTAATTTCTTTATATTTTACTGCAGCACACTTTCTAAATCCTTAAAATGGCATTTTTGAAAGCTTAATC TATGTACTTTGAAGTTAAATGAGTTAGTTTCACCTTTCTATTGAATTTTAAATTTTATTTCTCAAACTAATGTAGGAGGG GGAGTTTGCCAGTTCCTCAGTGAAGAAATTGAGGAAACGACAAATGCGGAATTTCTTTCTCTCTCTCATGGTTTCCCAGG TAAGGCCTATCAACTGCACATATAGGCATTTTACAAAATTTGTTTGCACTGTAAGGGCTTCTTTATGTTACATGTGAGCT GATAAGTATTGCACTAAAAATGTTTCTTCATTCCTATGTGGTGTTTTAAGTGATGAGAATTACTTTCGTCAGAAACTCCT ATCACAGTATTCAGCAGGGACATCCCATGTGTTTATACGTTCTTCTGATTTTTATGTAGATGTTGTTTACAGGACTGAGC TCTGTTTACTGACTTTCAAATTATCTTATCAGGGAGTTCCGATGATATATATGGGAGATGAATATGGACACACAAAAGGG GGGAACAACAATACCTATTGTCATGATAACTATGTGATCCTCTTATCTACTAGAATTTTAATTTTTCAATATCACCTTTT GGTTAATTCTGTTAACCCTAACCTTTTTACAGCTTAATTATTTCCAATGGGACATAAAGGAAGAATCATCATCAGACTTC TTCAGATTTTGCTGCCTTATGACCAAGTTCCGCTAGTAAGTACCTCTTACTTTCTTGGACTTTTGTATTTTTCTCGTATC CTAACGTTGTAGTCCTGCAGTGAATGTGAGTCGCTGGGCTTAGATGACTTCCCAACATCAGATAGACTGCAATGGCATGG TCATTTTCCCGGAAAGCCAGACTGGTCTGAAACTAGCCGTTTTGTGGCTTTTACCATGGTAAAATACTTTTCTTGCCCAT ATTTAATGGCATGTGGAGGTAACAATTCTGTTGCTGGTAAAAAGCTGTGGGAATCAGTGAATCATGTCTTTTGGATCAAT TTCTTATAATCTTCACCTAAAAAGTAGAATGAGGATATGTTTCCAATAACAACTTTGAGGTTATATGTTGGACAAAGCAA CACTGTATCTGGCAACATTAGAATGCCTCCTAATTTCTCCTATATGCCATGTACTAAAGCTGCTAGGTTAAAGAACTTAT TTTCCCCTTACGACCTTGGTTTGGATACTCCATAAATGGCTAATTTTCCCTTTGTTTTGGCATGAACATGAACCCAGGTG GATTCAGTAAAGAGAGAAATTTACATTGCTTTCAATACAAGTCATTTACCTGTCACAATTACCTTGCCAGAGCGTCCTGG ATACAGATGGGAACCCCTCGTGGACACCGGCAAGTCTGCACCATATGATTTTCTCACTCCTGACCTTCCTGGGAGAGATA TTGCAATACAACAGTATGCTCAGTTTCTTGACGCCAATCTTTATCCCATGCTTAGTTACTCTTCCATCATCCTCTTGCGT ACCCCAGATGAAAATGCTTAA
CDS sequence (LotjaGi4g1v0440200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATATGGATACAAATTTGATGGCAAGTTTTCTCCTATTGAGGGACACTACTATGACTCTTCTCTTATACTATTGGA CCCTTATGCAAAAGCAGTTATAAGCAGAGGAGAGTTTGGGTCTTTGGGACCTGATGGTAACTGCTGGCCCCAAATGGCTG GCATGGTACCTTCTAATGATGATGAGTTTGACTGGGAAGGAGACTTGCCTCTGAAGTACCCACAAAAGGATCTTATTATA TATGAAATGCATGTGCGAGGGTTCACAAAGCACGAGTCAAGCAAGACCAAGTTTCCTGGTACATATCTTGGTGTAGTGGA GAAGCTTGACCACTTAAAGGAACTTGGGGTAAATTGTATCGAATTATTGCCATGTCATGAGTTCAACGAGCTGGAGTACT TCAGTTACAATTCTGTACAAGGGGACTATAGGGTCAATTTTTGGGGGTATTCAACTGTCAACTACTTCTCACCAATGATC AGATACTCATCTGCTGGTATACAAAACTGTGGCCGTGACGGGATAAATGAAGTTAAGTTCCTGATCAAAGAGGCGCACAA ACGGGGAATAGAGGTTATCATGGATGTTGTTTTCAACCATACAGCTGAAGGGAATGAGAATGGTCCCATTATTTCTTTCA GAGGTGTAGACAACAGTATCTATTACATGATAGCACCCAAGGGGGAGTTCTATAACTATTCAGGATGTGGGAACACATTA AATTGCAACCATCCAGTTGTTCGCCAATTTATAGTGGACTGCTTAAGATATTGGGTAACAGAAATGCATGTGGATGGTTT TCGCTTCGATCTTGCTTCTATTATGACCAGGAGTAGCAGTCTCTGGAATGGAGTTAATGTATTTGGTACTTCAATAGAAG GTGACTTGCTGGCAACTGGAACCCCTCTAGTTAGCCCACCATTAATTGACTTGATCAGTAACGATCCAATACTTCACGGA GTGAAGCTTATAGCTGAAGCTTGGGATGCTGGAGGCCTCTACCAAGTTGGCACTTTCCCTCACTGGGGTATTTGGTCAGA ATGGAATGGGAAGTATAGAGACACAGTGCGTCAGTTTGTAAAAGGTACAGATGGCTTTGCTGGAGCATTTGCTGAATGCC TTTGTGGGAGTCCTAATGTATATCAGGGTGGTGGAAGAAAACCATGGAACAGTATTAACTTTGTATGTACTCATGATGGC TTCACTCTAGCTGACTTGGTGACCTATAACAACAAGCATAACTTGCCAAATGGAGAAGACAATAATGATGGAGAAAATCA TAATAATAGCTGGAACTGTGGACAGGAGGGGGAGTTTGCCAGTTCCTCAGTGAAGAAATTGAGGAAACGACAAATGCGGA ATTTCTTTCTCTCTCTCATGGTTTCCCAGGGAGTTCCGATGATATATATGGGAGATGAATATGGACACACAAAAGGGGGG AACAACAATACCTATTGTCATGATAACTATCTTAATTATTTCCAATGGGACATAAAGGAAGAATCATCATCAGACTTCTT CAGATTTTGCTGCCTTATGACCAAGTTCCGCTATGAATGTGAGTCGCTGGGCTTAGATGACTTCCCAACATCAGATAGAC TGCAATGGCATGGTCATTTTCCCGGAAAGCCAGACTGGTCTGAAACTAGCCGTTTTGTGGCTTTTACCATGGTGGATTCA GTAAAGAGAGAAATTTACATTGCTTTCAATACAAGTCATTTACCTGTCACAATTACCTTGCCAGAGCGTCCTGGATACAG ATGGGAACCCCTCGTGGACACCGGCAAGTCTGCACCATATGATTTTCTCACTCCTGACCTTCCTGGGAGAGATATTGCAA TACAACAGTATGCTCAGTTTCTTGACGCCAATCTTTATCCCATGCTTAGTTACTCTTCCATCATCCTCTTGCGTACCCCA GATGAAAATGCTTAA
Protein sequence (LotjaGi4g1v0440200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYGYKFDGKFSPIEGHYYDSSLILLDPYAKAVISRGEFGSLGPDGNCWPQMAGMVPSNDDEFDWEGDLPLKYPQKDLII YEMHVRGFTKHESSKTKFPGTYLGVVEKLDHLKELGVNCIELLPCHEFNELEYFSYNSVQGDYRVNFWGYSTVNYFSPMI RYSSAGIQNCGRDGINEVKFLIKEAHKRGIEVIMDVVFNHTAEGNENGPIISFRGVDNSIYYMIAPKGEFYNYSGCGNTL NCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRSSSLWNGVNVFGTSIEGDLLATGTPLVSPPLIDLISNDPILHG VKLIAEAWDAGGLYQVGTFPHWGIWSEWNGKYRDTVRQFVKGTDGFAGAFAECLCGSPNVYQGGGRKPWNSINFVCTHDG FTLADLVTYNNKHNLPNGEDNNDGENHNNSWNCGQEGEFASSSVKKLRKRQMRNFFLSLMVSQGVPMIYMGDEYGHTKGG NNNTYCHDNYLNYFQWDIKEESSSDFFRFCCLMTKFRYECESLGLDDFPTSDRLQWHGHFPGKPDWSETSRFVAFTMVDS VKREIYIAFNTSHLPVTITLPERPGYRWEPLVDTGKSAPYDFLTPDLPGRDIAIQQYAQFLDANLYPMLSYSSIILLRTP DENA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 641 | 641 | 0.0 | – | |
| Gene3D | 1 | 58 | 58 | 2.4E-11 | ||
| PANTHER | 1 | 641 | 641 | 0.0 | – | |
| SUPERFAMILY | 2 | 70 | 69 | 3.08E-10 | ||
| Gene3D | 59 | 531 | 473 | 1.0E-197 | – | |
| SUPERFAMILY | 60 | 523 | 464 | 1.17E-124 | ||
| CDD | 63 | 517 | 455 | 0.0 | – | |
| SMART | 82 | 508 | 427 | 3.3E-9 | ||
| Pfam | 100 | 206 | 107 | 5.6E-11 | ||
| Gene3D | 532 | 644 | 113 | 1.3E-45 | ||
| SUPERFAMILY | 533 | 637 | 105 | 1.01E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0440200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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