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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013783
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 166 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.629s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007409.1
n.a. PREDICTED: galactose oxidase-like [Cicer arietinum] gi|502126221|ref|XP_004499224.1| chr0 2886141 2888723 +
2 domain predictions
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Lj0g3v0021379.1
n.a. Alpha-amylase [Medicago truncatula] gi|357468733|ref|XP_003604651.1| chr0 8689319 8693960 +
2 domain predictions
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Lj0g3v0112629.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356494873|ref|XP_003516307.1| chr0 49086701 49088720 +
2 domain predictions
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Lj0g3v0170319.1
n.a. PREDICTED: galactose oxidase-like [Cicer arietinum] gi|502126221|ref|XP_004499224.1| chr0 81532475 81535057 +
2 domain predictions
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Lj0g3v0276889.1
n.a. PREDICTED: 1,4-alpha-glucan-branching enzyme-like isoform X1 [Cicer arietinum] gi|502131109|ref|XP_004500878.1| chr0 143719711 143726899 +
2 domain predictions
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Lj0g3v0284229.1
n.a. plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|350534998|ref|NP_001233914.1| chr0 147458895 147460987 -
2 domain predictions
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Lj0g3v0284239.1
n.a. seed maturation protein PM22 [Glycine max] gi|351727629|ref|NP_001237935.1| chr0 147462599 147463681 -
2 domain predictions
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Lj0g3v0304069.1
n.a. PREDICTED: isoamylase 2, chloroplastic-like [Cicer arietinum] gi|502109456|ref|XP_004493650.1| chr0 158384972 158388880 +
2 domain predictions
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Lj0g3v0344119.1
n.a. plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|350534998|ref|NP_001233914.1| chr0 180447720 180449561 -
2 domain predictions
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Lj0g3v0344129.1
n.a. plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|350534998|ref|NP_001233914.1| chr0 180451426 180452099 -
2 domain predictions
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Lj0g3v0358109.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356509640|ref|XP_003523554.1| chr0 188444569 188446221 +
2 domain predictions
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Lj1g3v1525840.1
n.a. PREDICTED: isoamylase 3, chloroplastic-like [Glycine max] gi|356508064|ref|XP_003522781.1| chr1 18026113 18043150 +
2 domain predictions
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Lj1g3v2294860.1
n.a. PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Glycine max] gi|356508675|ref|XP_003523080.1| chr1 26888280 26896538 -
2 domain predictions
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Lj1g3v2558430.1
n.a. Harpin-induced 1 [Medicago truncatula] gi|92896037|gb|ABE93043.1| chr1 29422046 29422627 -
2 domain predictions
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Lj1g3v4081830.1
n.a. PREDICTED: 4-alpha-glucanotransferase DPE2-like isoform X1 [Cicer arietinum] gi|502107608|ref|XP_004493318.1| chr1 48198486 48208191 +
2 domain predictions
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Lj1g3v4699750.1
n.a. starch branching enzyme I [Pisum sativum] gi|1345570|emb|CAA56319.1| chr1 56048407 56065886 -
2 domain predictions
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Lj1g3v4848430.1
n.a. PREDICTED: nodal modulator 1-like [Cicer arietinum] gi|502112755|ref|XP_004494433.1| chr1 58688202 58699960 -
2 domain predictions
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Lj1g3v4955530.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356571163|ref|XP_003553749.1| chr1 60394834 60397298 -
2 domain predictions
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Lj2g3v0766400.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like isoform X2 [Cicer arietinum] gi|502163798|ref|XP_004512953.1| chr2 11913710 11924137 -
2 domain predictions
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Lj2g3v0777280.1
n.a. Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isoform 1 [Theobroma cacao] gi|508783562|gb|EOY30818.1| chr2 12377314 12379524 -
2 domain predictions
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Lj2g3v1339010.1
n.a. PREDICTED: galactose oxidase-like [Solanum lycopersicum] gi|460387424|ref|XP_004239377.1| chr2 21098766 21101268 -
2 domain predictions
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Lj2g3v3007530.1
n.a. Desiccation protectant protein Lea14-like protein [Medicago truncatula] gi|357493805|ref|XP_003617191.1| chr2 38869029 38871760 -
2 domain predictions
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Lj4g3v0341140.1
n.a. PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 [Cicer arietinum] gi|502142119|ref|XP_004504800.1| chr4 4569894 4578633 +
2 domain predictions
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Lj4g3v2120360.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356562279|ref|XP_003549399.1| chr4 28973071 28978104 +
2 domain predictions
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Lj4g3v2573580.1
n.a. PREDICTED: calmodulin-binding transcription activator 4-like [Glycine max] gi|356510899|ref|XP_003524171.1| chr4 34335669 34343806 -
2 domain predictions
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Lj4g3v2593560.2
n.a. RNA recognition motif-containing protein isoform 2 [Theobroma cacao] gi|508713270|gb|EOY05167.1| chr4 34800899 34806353 -
2 domain predictions
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Lj4g3v3001260.1
n.a. plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|350534998|ref|NP_001233914.1| chr4 39596105 39597318 +
2 domain predictions
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Lj4g3v3015110.2
n.a. isoamylase-type starch-debranching enzyme 1 [Phaseolus vulgaris] gi|139867053|dbj|BAF52941.1| chr4 40347548 40356591 -
2 domain predictions
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Lj4g3v3060330.1
n.a. n.a. chr4 40783719 40785293 +
2 domain predictions
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Lj4g3v3060340.1
n.a. Galactose oxidase [Medicago truncatula] gi|357520921|ref|XP_003630749.1| chr4 40783789 40785293 -
2 domain predictions
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Lj4g3v3093980.1
n.a. PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max] gi|356527799|ref|XP_003532494.1| chr4 41050117 41056668 +
2 domain predictions
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Lj5g3v1698870.1
n.a. PREDICTED: pullulanase 1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502118156|ref|XP_004496127.1| chr5 24455122 24467633 +
2 domain predictions
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Lj5g3v2182420.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356509640|ref|XP_003523554.1| chr5 31571949 31573601 +
2 domain predictions
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Lj5g3v2302970.1
n.a. PREDICTED: phosphoglucan, water dikinase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502121720|ref|XP_004497422.1| chr5 34168030 34186065 -
2 domain predictions
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Lj5g3v2302970.2
n.a. PREDICTED: phosphoglucan, water dikinase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502121720|ref|XP_004497422.1| chr5 34168030 34186065 -
2 domain predictions
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Lj6g3v0528550.1
n.a. PREDICTED: calmodulin-binding transcription activator 3-like [Glycine max] gi|356511089|ref|XP_003524262.1| chr6 5524984 5536018 +
2 domain predictions
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Lj6g3v0856590.1
n.a. PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic-like [Cicer arietinum] gi|502166385|ref|XP_004513877.1| chr6 8507947 8513527 +
2 domain predictions
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Lj6g3v1467190.1
n.a. PREDICTED: protein GAMETE EXPRESSED 2-like [Cicer arietinum] gi|502119995|ref|XP_004496812.1| chr6 17229782 17235438 +
2 domain predictions
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Lj6g3v1559270.1
n.a. Calmodulin-binding transcription activator [Medicago truncatula] gi|357449029|ref|XP_003594790.1| chr6 17754165 17764156 +
2 domain predictions
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Lj6g3v2218220.1
n.a. Calmodulin-binding transcription activator [Medicago truncatula] gi|357445841|ref|XP_003593198.1| chr6 25685038 25693925 -
2 domain predictions
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LotjaGi0g1v0002300.1
n.a. 5'-AMP-activated protein kinase subunit beta; TAIR: AT5G03420.1 5'-AMP-activated protein kinase-like protein; Swiss-Prot: sp|Q94AX2|PTST_ARATH Protein PTST, chloroplastic; TrEMBL-Plants: tr|A0A0B2SUU9|A0A0B2SUU9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi0g1v0002300 LjG1.1_chr0 1957749 1966869 -
2 domain predictions
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LotjaGi1g1v0004800.1
n.a. SNF1-related protein kinase regulatory subunit beta-2; TAIR: AT4G16360.1 SNF1-related protein kinase regulatory subunit beta-2; Swiss-Prot: sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2; TrEMBL-Plants: tr|K7KBS0|K7KBS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004800 LjG1.1_chr1 821642 824555 -
2 domain predictions
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LotjaGi1g1v0004800.2
n.a. SNF1-related protein kinase regulatory subunit beta-2; TAIR: AT4G16360.1 SNF1-related protein kinase regulatory subunit beta-2; Swiss-Prot: sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2; TrEMBL-Plants: tr|A0A0L9UUZ6|A0A0L9UUZ6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004800 LjG1.1_chr1 821669 824644 -
2 domain predictions
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LotjaGi1g1v0055200.1
n.a. SNF1-related protein kinase regulatory subunit beta-1; TAIR: AT5G21170.1 5'-AMP-activated protein kinase beta-2 subunit protein; Swiss-Prot: sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1; TrEMBL-Plants: tr|A0A151U1N8|A0A151U1N8_CAJCA SNF1-related protein kinase regulatory subunit beta-1; Found in the gene: LotjaGi1g1v0055200 LjG1.1_chr1 7788891 7794772 -
2 domain predictions
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LotjaGi1g1v0074700.1
n.a. Ankyrin repeat-containing protein, putative; TAIR: AT2G03430.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q08DV6|ASB3_BOVIN Ankyrin repeat and SOCS box protein 3; TrEMBL-Plants: tr|I1JIE8|I1JIE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0074700 LjG1.1_chr1 10801351 10803782 -
2 domain predictions
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LotjaGi1g1v0125400.1
n.a. Ribonuclease E/G family protein; TAIR: AT2G04270.1 RNAse E/G-like protein; Swiss-Prot: sp|F4IV66|RNE_ARATH Ribonuclease E/G-like protein, chloroplastic; TrEMBL-Plants: tr|I1MB77|I1MB77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0125400 LjG1.1_chr1 19791651 19803965 +
2 domain predictions
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LotjaGi1g1v0125400.2
n.a. Ribonuclease E/G family protein; TAIR: AT2G04270.1 RNAse E/G-like protein; Swiss-Prot: sp|F4IV66|RNE_ARATH Ribonuclease E/G-like protein, chloroplastic; TrEMBL-Plants: tr|A0A0B2S438|A0A0B2S438_GLYSO Ribonuclease E; Found in the gene: LotjaGi1g1v0125400 LjG1.1_chr1 19792643 19802589 +
2 domain predictions
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LotjaGi1g1v0147600.1
n.a. Beta-xylosidase, putative; TAIR: AT1G78060.1 Glycosyl hydrolase family protein; Swiss-Prot: sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7; TrEMBL-Plants: tr|A0A1J7HJ40|A0A1J7HJ40_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0147600 LjG1.1_chr1 25222892 25228713 +
2 domain predictions
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LotjaGi1g1v0227700.1
n.a. Glyoxal oxidase-related protein; TAIR: AT1G14430.1 glyoxal oxidase-related protein; Swiss-Prot: sp|Q3HRQ2|GLOX_VITPS Aldehyde oxidase GLOX; TrEMBL-Plants: tr|A0A151TRE7|A0A151TRE7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0227700 LjG1.1_chr1 52757808 52762552 +
2 domain predictions
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LotjaGi1g1v0245600.1
n.a. Beta-xylosidase, putative; TAIR: AT1G78060.1 Glycosyl hydrolase family protein; Swiss-Prot: sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7; TrEMBL-Plants: tr|G8A378|G8A378_MEDTR Glycoside hydrolase family 3 amino-terminal domain protein; Found in the gene: LotjaGi1g1v0245600 LjG1.1_chr1 58936621 58943674 +
2 domain predictions
 –