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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0440800 |
| Transcript ID | LotjaGi4g1v0440800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT2G19580.1 tetraspanin2; Swiss-Prot: sp|Q9ZUN5|TET2_ARATH Tetraspanin-2; TrEMBL-Plants: tr|I3SY91|I3SY91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0440800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81427210..81436196) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTTTCCATTGTCAACCAAACAAAACATAAGTCTCTAGATCCAAACTCCCTCTCTTCCAAATCACCCCTAACAAACA AACAAAGCATGGTAACAAGAAGAAGAAGAAGAAAAAAACACATATAATAGAGATAGAGTCAATCAATAAAGACCATAGTC TCTACCTCTTTCCAAACTCCAATAGTTGCCATATCCCAAAATAGTAAAGTGAAGAAACAGAGTAACTATCAATGGGGGTA AGCAACAACATCACCGCAGTGCTCAACTTCATAGCCATGCTTTCCTCAATTCCCATCATAGCCTCCGGCATTTGGCTCGC ATCCAACCCAGACAACCAGTGCATCACCAACTTCCGCTGGCCCATCGTCATCATCGGCCTCCTCATCCTCCTCGTCTCCC TCGCCGGCTTCGTCGGCGCTTACTGGAACAAACAGGGTCTCTTAGCTCTCTACCTCTTCTCCATGGCGCTTCTCATCGCT CTCCTCCTCATTCTCCTCGTCTTCGCCTTCGTTGTTACCAGACCTGATGGGAGCTACGATGTTCCCGGAAGAGGGTACAA GGAGTACACGCTTGATCGATTCTCCTCGTGGTTGAGAAACCATGTTACGGGGTCTGGAAGCTGGCGGAAGATTAGACCCT GTTTGGCTGCTTCTGATGTCTGCATTAATCTTGCTCGCAATTACATCACTCCTGATCAATTCTTCAATTCTCACCTCTCT CCGTTACAGGTACCAATTCTTCACCATCAACTTATTTTGAGAATCAATTTTGGCACTTAGAAACTAAGAGAGAGAGAGAG AAACTTAAGTGCTTATCACATGAGCGCTTATTCGTAAGCTAATTTGGGAAACTTGTTGAGATTGTTAGAGTACATTGAGT TTGTATTTACTATGCTGCTGCATCATCTTTTGAGTAGTTATGACAGCTGACATATGCAGCTGTTTGTATTCTCCTATTTA TGTCAGCTGTTGGTATTCTCCTATTTATGTCAGCTGTATGTTACAGCTGTTGGCATTCTCCTGTTCTTCTATATAAGGAT ATCACATCTTCTGTAATCACTCAGATTATCAATAATACATTTTCTGTTATATTTCTATTTCTCTCTTCTCTCTCTCATTG CTTCTCTAATTTTAACATGGTAATCAGAGCTTCAATCGGTCCTTGATACATGGCTGCTGCACCTGCTTCCGTTGTCAATG TTCTTGAGTCTCTGTCTCGTACTGCAACAATCAAGCTTGATGATTCGAATTTCTATTCTTGGCGTCAACAAGTTGAAGGT GCGATTCAATCGCATCAGCTTCATGATTTTCTGGTTGATCCAGAAATTCCACAACGTTTTCTGACTGAAGAGGATCGTGT AGCTGCGACTGAGAATCCAGCTTATACGACTTGGATTAAGCAAGATTCCATGGTGTTTACATGGCTCTTGACGACTCTAT CTCCGTTTGTTCTTCCAACGGTGATCAACTGCGAGAGATCATCGCAGGTTTGGCGTGAGATCCTTGACTTTTTTGAGAAT CAGTGTCGCGCACAGTCTGCTAAGCTCAGATCTGAGCTGAAGAACATAACCAAAGGTTCAAAGTCGATCACTGAATATCT TCGACGCATCAAGACGATCGTCAACACTCTGGTTTCCATTGGTGAACCCGTAAGTTTTCGCGATCACCTTGAAGCGATTT TTGATGGTTTACCTGAAGATTATAGTGCTTTAAGCACGATTATCTTCACTCATGCTTCTTCGAGCACGATTTCTGAGGTC GAAGCGATGATCATTACTCATGATGCTCGCCTGGAACGATCACGGAAACGTAGCCTTAGCGATTCTACTGCTTCTGCGTT GCTTGCGCATACACATGCGTTCGCATCGGTTCCTGCTCCGATTTCACCTCAGATCTCCCGAACGCCGCCACCTTCTGTGG ATTTGACGCCGTCTCAGGCCAATTATGCTGCTGAATTTCGTGGTGGACGTGACTATCGGAATGATCAACAACGTCCAAAT TATCGTGATTCTGGTGACAATCGTGATACCTATCATGACCAGAATGATTCACGTGGACCAGGCGATGGCCGTGGTGGCTA TCCTGCTGGTGGACGCGGTGGTGGACGCGGCCGTGGGCGCGGCCGTAATTTGCAGTGTCAGATTTGTCAGAAGTGGGGAC ATGATGCGAGTGTCTGCTACCATCGCGCCGTTGGAGGTGGTTCTGTACAGAATGGCACCTTTACTAATATGCCTAGTCCT GCACCTTTTGGAGCCTTTCCTCCTATGCCTCTTGGTTCTGCCACTTTTGGCTCTTCCTCACCGTCTTTTTATGCTTCTGG ACCTGCTCCGTGGAATTACTTTGGCTCTTCCGCAGGACCTTACAATGGTGCTTACCCTCCAGGTTCTCAGTTTCCTGCTT TTACTGGTGGTTCTCAATATTCTGCACCTGGAGCTGTTTTTGGTCCAGTATCATCTTCTTGGAATTCACCTCGGCCCTCA CCTCCATCTTATCCGGGCCTTCTTGGCTCTCAGCCTCGCTCTCCTGCTCATGCTATGCTTGCTGGTCCTCTGCACCATGC TTCTTCTTCCGCATCTCAGCGTCCTGACAAGCCTACTTTGTGGTATCCCGATTCTGGTGCCACTCACCATGTTACCAATG CTGCTGGAAATTTTTCAGACACTTCTTCATTCACTGGAACTGAGCAGATTTTGATGGGCAATGGCCAAGGTTTGCCAATT CACTCTATTGGTTCTTGCACCATTCCCTCACCATATGATTCACACACTGTTCTCACTCTTAGTCAACTGCTTCTAGTTCC TTCTATCACCAAAAACCTTGTCAGTGTTAGTAGGTTTGCCAAGGATAACAATGTTTATTTTGAGTTTCACGCTTCTTTCT GTCTTGTTAAATCACAGGAAACATCTAAAGTGTTGCTTCGTGGAAGTGTTGGTTCTGATGGCTTATACACCTTTGATGAT GTCAACGCTGCTAGTGTCTCTTCTAGTTGTTCTAAATCTGATTTGTCTACTAGTACTCCTTCTGTTTTATCTACAGTGTA TCCAGGTACTGGAAAATCACAGAATATGTCTTCTGTTTCCAGTTTAGGTAATTCCAGCTATGACTTGTGGCATTGTAGAC TAGGTCATCCTCATCATGAGGTCTTGAAAACTACTTTACAACTATGTAATGTTCCTTTGCCTAATAAAACTTCTTTTGCC ATGTGTGTTGGTTGTTGTATGGGAAAGGCACATAGGTTGCCCTCTTCTTCTTCTTCTACTGTTTATACTCTGCCTTTTGA GTTGGTTTATGCTGATTTATGGGGACCAGCTTCCATAGAATCCTTTGCTGGTTTTTCATATTTTCTTACTTGTGTTGATG CTTGCACACGATACACTTGGATCTATCCCTTAAAACACAAGTCTGACACCTTTCAGACTTTTAAAAACTTCAAAGCATTG GTTGAACTGCAGTTTCAATGTAAGCTTAAGAGTGTGCAAACTGATGGAGGAGGAGAGTTTCGATCCTTGATTCCCTATTT TACTCAGTTAGGGGTAGTTCATCGTGTGACCTGTCCTCACACACACCATCAAAATGGGAGTGTGGAGAGGAAACATCGCC ATATTGTTGAAACGGGACTTGCTTTGCTTGCTTATGCCAAAATGTCATTGCACTTTTGGGATCACGCTTTTCTTACAGCT ACCTATCTTATCAATCGGATGCCTACTTCTGTTTTAGGAGGACAAAGTCCTTATTTTCAGTTGTATGGTTCTCAACCTGA TTACAAGTTCCTCAAGGTATTTGGGTCAGCTTGTTATCCTTTTCTGCGCCCGTATACCAATAACAAGTTGGCATATAGGT CCTAAGAGTGTGTATTTTTGGGCTACTCTTCTCAACACAAAGGATACAAGTGCTTGGATGCTCAAGGCAGAGTCTATGTC TCTAAAGATGTGTTGTTTAATGAGCATAGGTTCCCTTATGTTGAAATGTTTCCTGATTCTGCTACAGAAACAACTTCTCC AGAATCATTTTCTTTGCTGATTCCTCTTGCTGCTGCTCCAAATATTATTTCTAATGCTTCTCCAGCTGCTGAGCCTGCTT CTCCTGCTATGACAATGCATTCTGCGGGTTCTGATTCTTCACCCTCTGGCTCAGTGGATGTCTCTCCTTCGTCTGAGCAA TCTCCAGTTATCTCTGCACCTGTTTCTCCTGCTGTGACAGTGCATTCTGAGGGTTCTAATTCTTCCTCCTCTGGTTCAGT GGATGTCTCTCCTTCTTCTTCTGAGCAGCCTCCAGCATCAGCTGCTACACCTGATAATGTTCAAGCTGTCATCCCTGTTA ATGCTCATCCAATGCTCACCAGAGCAAAGAATGGCATTGTCAAGCCTCGCTTGTTTCCTTCTGTCTTGTTGACAGAAGTA GAGCCTACTACAGTCAAACAAGCTCTCAAGAGCAGTAAGTGGTTCAGTGCAATGCAGCAAGAGTATGAGGCATTGATGAC TAATAAGACCTGGACTCTTATGTCACTTCCAGCTGGAAGAAAGCCTATTGGTTGTAAGTGGATTTTCAGGATTAAAGAAA ATCCAGATGGAACAGTGAATAAGTACAAGGCTCGACTTGTAGCTAGAGGGTTCAATCAAGTGCATGGCTTTGACTATTCT GAAACATTTTCTCCAGTGGTCAAACCTATAACTGTGAGGTTGATTCTATCTCTTGCTATTTCCAAAGGGTGGCCTCTTCA ACAGTTAGATGTGAATAATGCCTTTCTCAATGGGAACTTAGAAGAAGAGGTTTACATGGTTCAGCCACCTGGATTTGAAC AGGGTGATAAGTCCCTTGTGTGTAAGCTTGACAAAGCTTTGTATGGCCTAAAACAAGCTCCTCGAGCCTGGTTTCACAGG TTGACTGCCACTCTTGTTCAATTAGGGTTCAAGGCTAGTAAGTGTGATCCCTCCTTGTTCACTTTGTCTTCACCAACTTG CTGCACATATGTTCTAGTATATGTGGACGATATTATTATCACAGGAGGTTCTTCAGTCCTAATTCAACATCTTGTTGACA AACTGAATTCTTCTTTTGCTTTAAAACAGTTAGGAAAACTTGATTATTTTCTTGGAGTTCAGGTTACACACTTGTCTGAT GGCTCTTTGCTACTTAATCAGACCAAATATATTGAAGATCTTCTTGAGAGAGAAAATATGTCTGAAGCCAATGCTCTGCC CACTCCTATGATTAGTAGCAGCAAACTGTCAAAGTTTGGAGGTACTTGCATGAATGATCCCTTTCTCTATAGATCCATAG TTGGAGCATTGCAATATGCTACAATTACCCGGCCGGATATCAGCTTTGCAGTCAATAAAGTCTGTCAATTTCTGTCTCAG CCTCATGATGAACATTGGAAGGCAGTTAAGAGAATTCTGCGGTTTCTTAAGGGTACCATTCATCATGGGTTGCTTTTTAA GCCTTTCTCTCTTGATCGTCCAGTAGCACTTCATGCCTACTGTGATGCAGATTGGGGTTCTGACCCGGATGATAGACGGT CAACTTCTGGCTCATGTGTGTTCTTTGGCCCCAATTTAGTGTCTTGGTCAGCTAAGAAGCAAACTTTGGTTGCTCGCTCA AGCACAGAAGCGGAATATAGGAGTCTGGCCAACATAGCAGCTGAGATTCTTTGGATTCAATCCTTGTTGACTGAGCTGCA TATTCCCTTCCAAACACCAACAATTTTCTGTGATAACCTGAGCACCGTAGCCTTGACTCTTAATCCGGTCCTTCACACTA GAACTAAGCATATGGAAATGGATCTTTTCTTTGTGAGAGAGAAGGTTCTCAATAAGACTCTTATTGTTCAGCATGTTCCT TCTCTTCTGCAGAAAGCGGATATCTTTACTAAAGCCCTCTCTTCAGAAAGGTTTCATGAGCTTAAGGACAAACTCAATGT GGTTGACAAATTTTCATTTGTCAAACCACCTTGAGTTTGAGGGGGTATGTTAGAGTACATTGAGTTTGTATTTACTATGC TGCTGCATCATCTTTTGAGTAGTTATGACAGCTGACATATGCAGCTGTTTGTATTCTCCTATTTATGTCAGCTGTTGGTA TTCTCCTATTTATGTCAGCTGTATGTTACAGCTGTTGGCATTCTCCTGTTCTTCTATATAAGGATATCACATCTTCTGTA ATCACTCAGATTATCAATAATACATTTTCTGTTATATTTCTATTTCTCTCTTCTCTCTCTCATTGCTTCTCTAATTTTAA CAGAGATAAGCTGAAAATATGTTGCAGGTAAGTAGAAACTCTAATTTATAAGCTAATTTGAACGAAAATACGCTCAAAAT AACTAATAGGTAGTCAGGTAGACTACAAGCTATTTACATAAGTTCTTTCAAACAGTTACACACACGTATTTAAATCATAA GATAAGCTCATAAGGAGGACAATTAATTTTAGAAGAATTTAGATGCTTTTGACATTGCTTCCTTCGGACATTGTTGGTTT GTTGATAAACAAGGATATGAATTTACTCTTTTTTTTTTCTTTCTTGTTTGGAAATTGTAAGTAAGTCTTATTAATTCACT TTTTCTTAAGAGGCAGAACGAATTTTGGCTTTTCTCTCTGTTTTTTTAGTGTTAATTTTCTTCTTTTAATCATTGAACCT TCCCTGCATTCTGTTACTGGTTTTAAGATCAAGTACTTGTACTGCTAAGTCAGTCACCAGATCCACCCCAGTGGTTTGCT TTTGCTTCTTGGAAAGTGGAAACATACAAAATGTTAATTGTTGATTTCATAAAGAAAATTAGTAGTACTATTTTTCTAAA AGCACTTCAGACCCACATCACATGATACCATGTTACATGTTTAACAACATTTCCAATGCCTGAATTTGAGGATTAATTTA TAAGTAAAAACCAAAAAACACCGGATTCTAGGTTCTTCTTATTTTCTAAGTCCTGATAGTATTATAGAATACTAGATCTA CAAGCTCTCGTTTCTTAGTTTTTTTTTTAATTACTTGAATCTTCCATTCCACCATAATACCATATACACAGCTCTAATAA GAATAAGATAAGATTCCTCAGTTTGGCACTTACAGTAAGTGAAGCTTGTATCCTTCCCAGTGGACAAGGTCACAAGGGGT AGTTGGAATTACTCGATTATGATGGTAGTTGGGAAAGAATTGTCTCCGTGACTTTTTAAGTGGGACCAACAGAGATTCTT AATAAATGCCAATGAAGATTACATTGAAATGGTGCACTCTGCTATCCATTCATAACATGATAACATTCACCTGGTCACAA CAATTATTACTGTAAGCCGCTTCAAATATGTGTTAGAAAGTATGAAAACAGAAAAATAATGCACCTCAATACATCAACAA AAAGTGTCTTGAGATGTGTTATTATTCCGTTTCATACTTTTTACATGTATCCAAGCGGGCTCTATGCATTGTTGGTAATA AGCTACATACATTCTTATCAGGTAAATTTTGCAAGCTAGTTTCCATCTTATTCATTACTTGACCCACCACAAGGATCATG AGTAGAAGACATTAGACCCATGCTTTGTTACCAGCTTGGCTAACCATACACTTGAGCTATGTGGGACCTTTCTCATTTTC TGTAGCAAGAATTATTGAGATAGCCACTGAATGATTCATATCATGCAAATCCAGACATATTAATTTATTCATCCTAGAAT AGTTAAGCTCACTTGTTGTCTCTATTGCACAACAAGATAAAAAGTTGTGGCTGCCAGCTTGTTGTCTGTGTAGTGACATG TTCTGATAGTTGTTTACCCCTCTTTTCTCTATAATTAATTCTATATCCTTAAAAAAATTCAATTAACAAAACTGAAACTA TTGTTCTAGAAGTCTCTTGTTCGAGTCCCTGTGAATTTTGCCGCCCGTAGCGGTCATATCTATGATTGTCTTAGTAGAGG ATACCCCGGTTTAAGCAAACAACAAAAATTGAAACTTTTCTAATGTCTATTACTCCCTTTAAGTAAAATGTTTGATTGGT TTTGCAGTCAGGATGTTGCAAACCTCCAACTGCTTGTGGGTACAATTTTGTGAGCCCCATATTGTGGACAAACCCTGTGA ATCCCATGGCTGATCCAGATTGCAACTTGTGGAACAATGACCAGAACCAGCTATGCTACAATTGCAATGCTTGCAAGGCT GGTTTACTGGGGAACCTCAGAAAAGAATGGAGGAAAGCAAATATCATTCTGATTGTGGCTGTGGTGGTCCTTATATGTGT CTATATCATTGCTTGCAGTGCCTTCAAGAATGCCCAGACAGAAGACCTCTTCGACCGTTACAAACAGGGTTGGGTTTGAT CCTTTCTCCTCCCAACACAACAAAGTTGTTAACTTATTATGTTCAGTTGCACGGTGAAATTTTTTATAATCACGTATTAT TAGAAGCTATACTAAATCCTAGCTTTTGAGTAAACATAGATTTAATTAAGTGCAAATCGCGAAATCAAACATTCACAAAC ACTAGCCTTTTTGCCTTTTGGGTTTTCTTTCACGTCCCTTTATCTCTGTAAGAGCCTTTGTCATTAGTGTACATATTCCA TTTCTTTTTGGCGTATTGAGTCACAGGTATTGTAAGTATTAACTTGTCTCATTCCTAATATTTACCTTTCCTTGGAGCAT ATGACAGACTAGAAATTCTATGTTCAGTTATGATATTTTTCCTTTAAATAAACATTGGTAGTCAATGCTGCTGCTATCCT CATTTTTTAGTTGGTTTGATTCCACGGTAAAATGTTGTAGAATCACTTCTAGTTAAAAGCTCAAGTTTTAACTTCTGAGT GTGTTTGGGAAACTCTCGAACATCTATTTTCTCTAATTACAATGCAAAAGAAATGGAAAAAATACAGCACCCAAAGCTAA AACATGAAAGAAATTGTGTAATTTGGAAAGTGCTTCTTCATATTGATGGGTGATTGTACTAAAGACATATATATCTTGAG TAAATATGTCTTGCATTATGTCCAAAT
CDS sequence (LotjaGi4g1v0440800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTAAGCAACAACATCACCGCAGTGCTCAACTTCATAGCCATGCTTTCCTCAATTCCCATCATAGCCTCCGGCAT TTGGCTCGCATCCAACCCAGACAACCAGTGCATCACCAACTTCCGCTGGCCCATCGTCATCATCGGCCTCCTCATCCTCC TCGTCTCCCTCGCCGGCTTCGTCGGCGCTTACTGGAACAAACAGGGTCTCTTAGCTCTCTACCTCTTCTCCATGGCGCTT CTCATCGCTCTCCTCCTCATTCTCCTCGTCTTCGCCTTCGTTGTTACCAGACCTGATGGGAGCTACGATGTTCCCGGAAG AGGGTACAAGGAGTACACGCTTGATCGATTCTCCTCGTGGTTGAGAAACCATGTTACGGGGTCTGGAAGCTGGCGGAAGA TTAGACCCTGTTTGGCTGCTTCTGATGTCTGCATTAATCTTGCTCGCAATTACATCACTCCTGATCAATTCTTCAATTCT CACCTCTCTCCGTTACAGTCAGGATGTTGCAAACCTCCAACTGCTTGTGGGTACAATTTTGTGAGCCCCATATTGTGGAC AAACCCTGTGAATCCCATGGCTGATCCAGATTGCAACTTGTGGAACAATGACCAGAACCAGCTATGCTACAATTGCAATG CTTGCAAGGCTGGTTTACTGGGGAACCTCAGAAAAGAATGGAGGAAAGCAAATATCATTCTGATTGTGGCTGTGGTGGTC CTTATATGTGTCTATATCATTGCTTGCAGTGCCTTCAAGAATGCCCAGACAGAAGACCTCTTCGACCGTTACAAACAGGG TTGGGTTTGA
Protein sequence (LotjaGi4g1v0440800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVSNNITAVLNFIAMLSSIPIIASGIWLASNPDNQCITNFRWPIVIIGLLILLVSLAGFVGAYWNKQGLLALYLFSMAL LIALLLILLVFAFVVTRPDGSYDVPGRGYKEYTLDRFSSWLRNHVTGSGSWRKIRPCLAASDVCINLARNYITPDQFFNS HLSPLQSGCCKPPTACGYNFVSPILWTNPVNPMADPDCNLWNNDQNQLCYNCNACKAGLLGNLRKEWRKANIILIVAVVV LICVYIIACSAFKNAQTEDLFDRYKQGWV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 268 | 268 | 1.3E-147 | – | |
| PANTHER | 1 | 268 | 268 | 1.3E-147 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PRINTS | 6 | 29 | 24 | 1.0E-6 | ||
| Phobius | 6 | 31 | 26 | - | – | |
| Pfam | 7 | 250 | 244 | 1.3E-26 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| PRINTS | 38 | 64 | 27 | 1.0E-6 | ||
| Phobius | 43 | 65 | 23 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| PRINTS | 65 | 93 | 29 | 1.0E-6 | ||
| Phobius | 66 | 70 | 5 | - | – | |
| Phobius | 71 | 95 | 25 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 96 | 231 | 136 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 232 | 253 | 22 | - | – | |
| Phobius | 254 | 269 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0440800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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