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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0442800 |
| Transcript ID | LotjaGi4g1v0442800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serpin-like protein; TAIR: AT1G47710.1 Serine protease inhibitor (SERPIN) family protein; Swiss-Prot: sp|Q9S7T8|SPZX_ARATH Serpin-ZX; TrEMBL-Plants: tr|I3SX36|I3SX36_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0442800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81623009..81624419) extracted from Lotus japonicus Gifu genome v1.2.
CAACAATGGACCTCAAAAAATCAATGAGGTGCCAAGAAGATGTTGCACTCAACATCACAAAGCATTTATTCTCAAAAGAA GATTATCACAAGAAGAACCTTATCTTTTCGCCCTTGTCTCTCCATGTTGTTCTTAGTGTCATGGCCGCTGGTTCAGCCGG AAGCACACTCGATGAGCTTCTTTCCTTCCTCCGATTTGACTCCATGGACCATCTCACCACCTTCTTCTCCCAGGTCATCT CCCCTGTGTTGTTCTCTGAAGATCGTCTTTGTTTTGCCAATGGAATGTGGGCTGATGAATCACTTTCCCTTTCCCATTCT TTTAAACAACTTGTGGCCACTCATTACAAGGCCACTCTTGCTTCAGTTGATTTTAAGACCAAGGTACTATCGATCACTTT GTTTTTTATCAACATCTTAATTTTTTGTAATTGATCAACATATCTATCTATTTAATTGTTTGTGAAAAAAATTGATTTTG ATTTTGATGTGATTTTAAAGGGTGATCAAGTACACCATGAAGTGAATTCGTGGGTTGAAAAAGAGACGAATGGCCTTATC ACACATCTTCTTCCTCCCAGTACTATAAACAACTTAACCAAGCTTGTCTTTGCAAATTTATTGAGCTTCGAGGGTGAGTG GAAACACAAGTTTCCGGCTATACCAATTAAATATAATTTTCACCTCTTTAGTGGCACCTCAATCACAGCTCCCTTCATGA AAAGCATGCAAAAGAAGCACTTTATTAGTGCTTTTGATGATTTTAAAGTTGTCCGTCTTTCTTATAGACAAGGTGGGGAT AAATCGCGTCGGTTTTCCATGTATATTTTCCTTCCAGATGCAAAATATGGGCTATTAGCATTAATTGAAAAGTTAGCTTC AGAACCTCGTTTCTTAAAAGGTAAGTTTCCTCGGCGAAAAGTGCAAGTACGTGACTTTTTTATTCCAAAATTCAAGATTT CTTTTACATTTGAAGCTTCTAATGTTATGAAGGAGTTAGGATTGATTTTGCCTTTCTCTCACCGAGATGTAAATTTTTCA AAAATGGTGGGGGAAATGAACTCTCATTTGGATAAATTATGTGTGGAAAGCGTGTTTCACAAAGCTTTCATTGAGGTAAA TGAAAAAGGTACTGTAGCTTCAGCAGCAACCCTTCCTTTGGCATTAAGAGGTAGTCGTCCGGTTACCAGTATAGACTTTG TAGCTGACCACCCTTTCCTTTTTTTAATCCGAGAAGATTTCAACGGAACAATTCTCTTTATCGGACAAGTGATCAATCCT CTTGATGGAGCAGATGCATCTGCCACGCCGGTGAAATTTAGAAAGCCCAATATCTGACTATATTTTGTGATTAGGAAGGT TCTTGTTTTTCTTTATTATATTGTTCTCTTAAAGCTATTTAATTTGATTGA
CDS sequence (LotjaGi4g1v0442800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCTCAAAAAATCAATGAGGTGCCAAGAAGATGTTGCACTCAACATCACAAAGCATTTATTCTCAAAAGAAGATTA TCACAAGAAGAACCTTATCTTTTCGCCCTTGTCTCTCCATGTTGTTCTTAGTGTCATGGCCGCTGGTTCAGCCGGAAGCA CACTCGATGAGCTTCTTTCCTTCCTCCGATTTGACTCCATGGACCATCTCACCACCTTCTTCTCCCAGGTCATCTCCCCT GTGTTGTTCTCTGAAGATCGTCTTTGTTTTGCCAATGGAATGTGGGCTGATGAATCACTTTCCCTTTCCCATTCTTTTAA ACAACTTGTGGCCACTCATTACAAGGCCACTCTTGCTTCAGTTGATTTTAAGACCAAGGGTGATCAAGTACACCATGAAG TGAATTCGTGGGTTGAAAAAGAGACGAATGGCCTTATCACACATCTTCTTCCTCCCAGTACTATAAACAACTTAACCAAG CTTGTCTTTGCAAATTTATTGAGCTTCGAGGGTGAGTGGAAACACAAGTTTCCGGCTATACCAATTAAATATAATTTTCA CCTCTTTAGTGGCACCTCAATCACAGCTCCCTTCATGAAAAGCATGCAAAAGAAGCACTTTATTAGTGCTTTTGATGATT TTAAAGTTGTCCGTCTTTCTTATAGACAAGGTGGGGATAAATCGCGTCGGTTTTCCATGTATATTTTCCTTCCAGATGCA AAATATGGGCTATTAGCATTAATTGAAAAGTTAGCTTCAGAACCTCGTTTCTTAAAAGGTAAGTTTCCTCGGCGAAAAGT GCAAGTACGTGACTTTTTTATTCCAAAATTCAAGATTTCTTTTACATTTGAAGCTTCTAATGTTATGAAGGAGTTAGGAT TGATTTTGCCTTTCTCTCACCGAGATGTAAATTTTTCAAAAATGGTGGGGGAAATGAACTCTCATTTGGATAAATTATGT GTGGAAAGCGTGTTTCACAAAGCTTTCATTGAGGTAAATGAAAAAGGTACTGTAGCTTCAGCAGCAACCCTTCCTTTGGC ATTAAGAGGTAGTCGTCCGGTTACCAGTATAGACTTTGTAGCTGACCACCCTTTCCTTTTTTTAATCCGAGAAGATTTCA ACGGAACAATTCTCTTTATCGGACAAGTGATCAATCCTCTTGATGGAGCAGATGCATCTGCCACGCCGGTGAAATTTAGA AAGCCCAATATCTGA
Protein sequence (LotjaGi4g1v0442800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLKKSMRCQEDVALNITKHLFSKEDYHKKNLIFSPLSLHVVLSVMAAGSAGSTLDELLSFLRFDSMDHLTTFFSQVISP VLFSEDRLCFANGMWADESLSLSHSFKQLVATHYKATLASVDFKTKGDQVHHEVNSWVEKETNGLITHLLPPSTINNLTK LVFANLLSFEGEWKHKFPAIPIKYNFHLFSGTSITAPFMKSMQKKHFISAFDDFKVVRLSYRQGGDKSRRFSMYIFLPDA KYGLLALIEKLASEPRFLKGKFPRRKVQVRDFFIPKFKISFTFEASNVMKELGLILPFSHRDVNFSKMVGEMNSHLDKLC VESVFHKAFIEVNEKGTVASAATLPLALRGSRPVTSIDFVADHPFLFLIREDFNGTILFIGQVINPLDGADASATPVKFR KPNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 8 | 387 | 380 | 4.3E-120 | ||
| PANTHER | 8 | 387 | 380 | 4.3E-120 | – | |
| SUPERFAMILY | 9 | 386 | 378 | 1.14E-94 | ||
| Pfam | 11 | 386 | 376 | 1.9E-87 | ||
| SMART | 15 | 386 | 372 | 2.5E-71 | ||
| Gene3D | 29 | 334 | 306 | 1.1E-104 | ||
| Phobius | 32 | 52 | 21 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 53 | 404 | 352 | - | – | |
| Gene3D | 173 | 381 | 209 | 1.1E-104 | ||
| ProSitePatterns | 359 | 369 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
Expression pattern of LotjaGi4g1v0442800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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