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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0444100 |
| Transcript ID | LotjaGi4g1v0444100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RRP15-like protein; TAIR: AT5G48240.1 Rrp15p protein; Swiss-Prot: sp|Q9Y3B9|RRP15_HUMAN RRP15-like protein; TrEMBL-Plants: tr|I3S676|I3S676_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0444100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81727722..81731375) extracted from Lotus japonicus Gifu genome v1.2.
GGTTTTGAACCCAAAAAAAAATAGTAACGATTTGAGAGAGACAAACACCCCTCACCTCAAAGGAGAGGAGCGACCAAACC TTCCAATCACTAAGAGTAACGACAGCGCGGCGGCCACCGGCGACGACGCGTGCGGCGGTTCTCCTCCCCAGGTTGGTTGT CATTTGCTCTGTTGAAGGCAAGGAAGCTAGGTTATTATTGACATCTTGTTTTGTGTGCTGTTTGGTTGTCCTGTTTTCTG TTGAAGGCTTGAAGCTAGGTTTTTGTTGTAGTTCTGTTTGGTTGTTCTTGTTCTCCACTGATGTTTAAGTTCTATGCTCT GATGATGAGAACTTATATTTAAGTCTCATGGTCTTTTTGATTAGTACTTTATGACTTATGTATGACATTACTATGAATTG TGAGCTATGTTTTATTACACTTTATGATTTGTGTATGACATTCCTAAGAATTTTCATTATTTATACTATATGTGTAATTA TCAAAAGCTACTAAAGCTTACTTTTGCATTGTGAATACTGATTCTCACTTGCTTCAGCAGTTTGTTAATATCACCTGTCT TCATTTTTGGCGTATAGGTTGCATCATAAAAACAATCCATGGCTGACGAAACACAATTAATGGAACCTGGAAGAGATCCA AGAAAGAGGAAGTTTGTTAAAAATCAGCGCCATAAAAATTCTAAGCTGAGACCGAAAGGGAAGCCAGCACAACATGGACA AAAGAAAGTTAAAGTAAACCAAGAAATGAAGAAACTTTATCACAAGCGAGCACGAGAGTATAATTCTGATGACGATGAAG AAGATGAGACCGCTGTCCCTGCTACCACGAGGCCTAGAAGGATGACATCTATCAAATATGAAAAGAATGAGGTGGATGAC ATAGAAAATGAAGATCTGTCTGATGATGAAGGAGCGGCAGGGGGAGAAAAAGTGAAGAATAAGAATGTTACTTTTATGAA AAATCATAACTATGAGGGTGAAGAAGAAGACGATGGTGAAATTCTGCCAGGAATTACAAAATTCACTGAAGGTTGTAAAG CCTTTAAGTTGGCCTTCATGAGTATTGTAAAGAAGAGTGTTTCTGATGACTTGTTGGTAAGTTTGGTGATCATACAACAT TATAATGTTTATATTGAACATTAGAAAAATGCTTTTTAAAGACTTGGTAACTTTGCAGAATCCAATATTGTCAGCGAACA AAAATCTTGTTGTAGAAAAGCTTGCAGAAGAGGTTGCAGAACGCAAGGGCAAGAGAGAAGCAAGAAAGGAAAAGCAGATG GTAATTTTAAATGTCAAGTTGACTGTGATTTTAATGTTATCTGAGTTAGCATTGAGTGACAATATTTATGTATCTTAATT TTTTTTCGCCTAAGTTTTCTTTAACTGGGAATTAGTCTGGTTAGTAATCTTATTACTTTTTGCAGTTAGCAGAAAAGGGG CATGTCAAACCTGCTACTTATTTGGACACCCATGAAAAGTTTCTAATAAGTGTTGCTACAAAAGGAGGTAAATATGTTTT TCCATTTAAATAGAAGTCTATGGCTTCTTTATATTCTTTAGGTGGCTTGCATTTTCCTTATACTGATTTGGACTGTTTTT GTGACTTGTGACCATGTATTACTTCTGATTACTTTCAGTGGTCAAGCTGTTCAACGCTGTAAGTTTTCACTTAACTTTTA GCCAAAATTGAGTTCCTTCCTAGATTTCCACCTATCTCTCTTTGTCGCTTTGTATCTTCATCAATACTAAACCAGAGATT TGTTCATATCTGTTGCAGGTCAATAAGGCACAGGTTGCTCAGAAAGGGTTCAACCCCTCAAGGATTAAGGATGCAAAAGG TTAAGTTATTTTTCTATAATCACGAAAAATGAAACATGAGAAAGAAAAACCCTTCTCAGTAGTTCTGAACTTCTGATACA CTAGTAGCATAACCTAATCAAGAAAAGAATAAGAAATCTCATTCAGAAGACATCTAATGGCAAAGTTGGCCCAATTGTTT TACTCAAATGAGCTTAGTTTTTATTAATTTTTTTATATGTCTATCATGTTGTAGTCTGGATCGTGATATCATGCTTTAAG TAATAATCAATTAAAATGAACCAAAGAAAAAAAATTAGATTGCTCACAATCCCCCCTGATTCCACCCCTACCTAAATTAT CTGCTCTTGTTCATCCCTATCGGTTCCAATTTTGTTATATTCAAACCTGTCTGTATATGCTGCCAGAGTTAAGAAAGCGG ACCAAAGAAGCCTTCTTTTCAGAGCTAGGGAAGCCATCATTGCCTGGCACGTCTGGAAAGGTAATTTGTTACTACTGTTC TCAGTGTCAGTTTTTCATTGGGAGTCCTTATTTTTAAAGATGCTTAGACCTGTTAGTCCGATGAGTTTAACCAGATCGTA CGTGATTGTTGTTATTCCCAAAAACCAGAATACAGAAACTTCCGTAACCCCGCATTGTAGCGGACTTAACCAGTAAGAAA CTCTGGTGAAAGGGAAAAAATAAAAGGTTTTTGTTTTTTGCAATTTTATAAATTCTAATTCATAAATGTAAATGCATAAT TGTCCGTTTTCTCTTTAAACATATTAATTTATAAGCTCTGGATTGTTTTAATTTAAGTGTATTCCATTTGATATCTTTTT TAAGTTGTCTCTTTGATCATTTAATAGTTTTTCTGGTCTGAAAATTTGTCAAACTGGTCGAACCTTGAACTCATGAAATA GTTTGAAGTTTTTGATAAACGCTGCCTTCAAGTTTTTTACTTAAGGAGTAAGAAAGTCGGAGTCTCAGAGATGTTTTAGA TCTACACTATCATGTTTAGCTACCCTGTGCAATTGTTCCTTCAATGAACTGTATTTTGAATGAGGTAACTTCATATGTTG CTTTAGTATCTAATTACTTGGATTTTGGAATATGCAGGTCAATGGAAGCACAAGCAATGCAGAAGATGAACAGCCTGCTT GGGCTCCGCTACAAGATAATTATATGCTGACGAGTTCAAAATTGAAGGATTGGGACAAAATGCCGGTGAGTATACTTTGA AGTTGGTACAAGTTACCATTATGCTATCCAGCTTACTTGCACTCACTGTTTTTCTTATCTGCAGAATAAAAATGTATCAG ATGACACTGGAAAGATTTCTGAAGACAGTTCGGATGAAGATTAATGTTTTAAAACTCCGTAAAGAAAGCATGGAGATATT TATGATGGGACAATCTGTCAGATGTTAAATACTTCACCCACACAATTTGCTGTGATATGTACTTTAATATCGAACACGAA AAAAATGAGGATTTGAAATAAGGATTTGGTAAGGCTTGACTTTGAAAAGTTCACTAAGGCGACAATGAAGGGTTGGTTGA GCATGGGATTGATAGGGCATCCCTGAGTGATGTTTTGTGGATAGTAAAGACTAATGTGGATCATTTGTGGTGAAGAAATT GTTTACCTCTTGACTCATTATTCTGTTTTAATTTAAATTTTAATATTTTCTCAAAAAATGAGTTCTACTCAAATTAAGCT ATTAAGATTTTTTTGATTATATCTCCATACTAAAAAGTGTATGATTTCCTCTATTGCTTGTTTAAGCTAGGGAATTAGCT TTTGTCTTTAGTGAAATTAGCAAAATGAGGAACTTCTGAATGTGCACAGTGCCT
CDS sequence (LotjaGi4g1v0444100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACGAAACACAATTAATGGAACCTGGAAGAGATCCAAGAAAGAGGAAGTTTGTTAAAAATCAGCGCCATAAAAA TTCTAAGCTGAGACCGAAAGGGAAGCCAGCACAACATGGACAAAAGAAAGTTAAAGTAAACCAAGAAATGAAGAAACTTT ATCACAAGCGAGCACGAGAGTATAATTCTGATGACGATGAAGAAGATGAGACCGCTGTCCCTGCTACCACGAGGCCTAGA AGGATGACATCTATCAAATATGAAAAGAATGAGGTGGATGACATAGAAAATGAAGATCTGTCTGATGATGAAGGAGCGGC AGGGGGAGAAAAAGTGAAGAATAAGAATGTTACTTTTATGAAAAATCATAACTATGAGGGTGAAGAAGAAGACGATGGTG AAATTCTGCCAGGAATTACAAAATTCACTGAAGGTTGTAAAGCCTTTAAGTTGGCCTTCATGAGTATTGTAAAGAAGAGT GTTTCTGATGACTTGTTGAATCCAATATTGTCAGCGAACAAAAATCTTGTTGTAGAAAAGCTTGCAGAAGAGGTTGCAGA ACGCAAGGGCAAGAGAGAAGCAAGAAAGGAAAAGCAGATGTTAGCAGAAAAGGGGCATGTCAAACCTGCTACTTATTTGG ACACCCATGAAAAGTTTCTAATAAGTGTTGCTACAAAAGGAGTGGTCAAGCTGTTCAACGCTGTCAATAAGGCACAGGTT GCTCAGAAAGGGTTCAACCCCTCAAGGATTAAGGATGCAAAAGAGTTAAGAAAGCGGACCAAAGAAGCCTTCTTTTCAGA GCTAGGGAAGCCATCATTGCCTGGCACGTCTGGAAAGGTCAATGGAAGCACAAGCAATGCAGAAGATGAACAGCCTGCTT GGGCTCCGCTACAAGATAATTATATGCTGACGAGTTCAAAATTGAAGGATTGGGACAAAATGCCGAATAAAAATGTATCA GATGACACTGGAAAGATTTCTGAAGACAGTTCGGATGAAGATTAA
Protein sequence (LotjaGi4g1v0444100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADETQLMEPGRDPRKRKFVKNQRHKNSKLRPKGKPAQHGQKKVKVNQEMKKLYHKRAREYNSDDDEEDETAVPATTRPR RMTSIKYEKNEVDDIENEDLSDDEGAAGGEKVKNKNVTFMKNHNYEGEEEDDGEILPGITKFTEGCKAFKLAFMSIVKKS VSDDLLNPILSANKNLVVEKLAEEVAERKGKREARKEKQMLAEKGHVKPATYLDTHEKFLISVATKGVVKLFNAVNKAQV AQKGFNPSRIKDAKELRKRTKEAFFSELGKPSLPGTSGKVNGSTSNAEDEQPAWAPLQDNYMLTSSKLKDWDKMPNKNVS DDTGKISEDSSDED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 1 | 111 | 111 | - | – | |
| MobiDBLite | 17 | 40 | 24 | - | – | |
| PANTHER | 21 | 321 | 301 | 1.4E-66 | ||
| MobiDBLite | 42 | 63 | 22 | - | – | |
| Pfam | 150 | 267 | 118 | 7.4E-18 | ||
| MobiDBLite | 268 | 334 | 67 | - | – | |
| MobiDBLite | 276 | 291 | 16 | - | – | |
| MobiDBLite | 310 | 326 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. |
Expression pattern of LotjaGi4g1v0444100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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