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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0444300 |
| Transcript ID | LotjaGi4g1v0444300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT5G56590.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|A0A0B2QA05|A0A0B2QA05_GLYSO Glucan endo-1,3-beta-glucosidase 13; Found in the gene: LotjaGi4g1v0444300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81737477..81739908) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAGTTCTCTTTTTTGTAATTCTTACTCTCATTTAATCTATTGATATTATGAATCAGATTGTTGTTCTGGGAGTTTTA TTGGTGTCTGCTATGGAAGAAGTGCTGATGACCTCCCTACACCGGACAAGGTGGCACAGTTAGTTCAACTTCATAAAATC AAATATGTCAGGATTTATGATTCTAATACACAGGTCCTGAAGGCATTTGCAAACACTGGAATTGAACTTATGATTGGGGT TCCAAATTCAGATTTAGTGTCATTCTCCCAGTTCCAATCTAATGCGGATAGTTGGCTGAAAAACAGCGTCCTTCCATACT ATCCGGCCACAAAGATCACATACATTACGGTTGGTGCTGAAGTTACAGAAAGTACCAATAATGCCTCTGCATTTGTAGTA CCTGCCATGAACAATGTACATACAGCACTTAGGAAACTTGGGCTGCACAAAAAGATCAAAGTTTCAAGCACTCTTTCCCT TGGGGTTATGTCCCGATCATTCCCTCCTTCTGCTGGTGCTTTCAATAGTAGTCATGCACATTTCCTGAAGCCAATGCTAG AATTTCTTGCAGAAAATCAGTCACCTTTTATGATTGATATCTATCCTTATTATGCATACCGAGATTCCCCAAATAAAGTG CCTCTAGATTATGCCCTGTTTGACGCATCCTCTGAAGTTATTGATCCAAACACTGGTCTGCTGTACTCGAACATGTTTGA TGCCCAGATTGATGCTATTTACTTTGCACTGATGGCTCTAAATTTCAGAACAATTAAGATCATGGTCACTGAAACGGGTT GGCCTTCCAAAGGGTCGCCTAAGGAGAAGGCTGCTACTCCTGACAATGCACAAACTTATAACACTAATCTGATAAGGCAT GTTATCAACAACACCGGTACTCCTGCAAAGCCTGGGGAGGAGCTTGATGTTTACATTTTCTCATTGTTCAATGAAAATAG AAAGCCTGGTATGGAATCTGAGAGGAATTGGGGATTATTTTACCCGGATCAGACAAGTGTGTACAATCTAGATTTCACTG GACGAGGTGCTGTTGATCTGACTACAAAAGCAAATGTAACAAGGTCAAATAAAACAACATGGTGCATTGCTTCAAGTAAA GCGTCACAAATTGATTTGCAAAATGCCATAGATTGGGCCTGTGGTCCTGGCAATGTGGACTGTACTGCTATCCAGCCTAG CCAGCCTTGTTTTGAGCCAGACAACCTAGCTTCACATGCATCTTATGCTTTTAATAGTTACTACCAGCAGAATGGGGCAT CTGATGTTGCCTGTAGTTTCGGTGGTACAGGTGTAAAAGTCGACAAGGATCCAAGTATGTTCTTTGCAGTCCATCACTCA CCAATTCTGCTTTTCTTTTTCCATTATTTTATCATGTGCCATTTTTAACTATTGCATACACATAGCTCGTAAAAAACAAA ATTATTTTTTGTAGAAGAAAGTGTTAAGAGTTTGTAGGAAGTTGTAGCAAATGGAAGTATGTGGTGGGGAACGGATGAGC CCATAAGAATCTTCACCCAATATCCTAAGATATTTAGTATATGGATCTGTTCTCTTATATGGAATGTGAGACTTCAAACT CACACTTGAATTCCCAAAGTCCTTTCCCTTAAAGTGTAAGCCCAATTAATATGCTCTTGAGGCCTAAGTCTCTTCGAGTA TAAACAGGTCAACAAGGTTCTCTCACAAAGAGCCAAATACTTCACAATAAAGGTTTCACAAACATGGCTGAGGCCAAAGT CCACACACTAACTACCACCTCCAAATACTTTGCAACTGAACTAGGAAGTGGGGGAGACCAAAAGCAAGGACCTGTGATAA TGGGCCAAGCAATAGACCAAAGCCATTGAGTGTATGAGTTTTTATCTAAGTCTTAGACCTTTCCTAACCAATGTAGGACT TCTCAAACTTACATTTGAGTTCCTAGCATGTTGTCTTATGATATTATCTATTGAGTTGGCTGTTGTAATAACTGTTGTTG ATTTATCAATGTTGGTGATAATATTTCATTAAATTGTCTATCTGTCATCTTGACCTTCTTGTCTGATCTTGCCCAAAGCA TTGCTTTTTTTTTTTGTGTCACTGAAACACTAGTTGTTTTCAACTCTGCAGGCTATGACAAGTGCATCTACATGAGAGCT GGGTAAGTTCAATATAGGTCATGCAATTTTGTCTGTCCTTTTATTTTGGAGGAGTTTAAATTGTTTTAAATAATTACTCC TTGCTATCAAGACCTATCATGACATCTGGGTTTCTTCCATTCTGTTTTTGCAGCAATAATAAAACTGTGGGAAGCAATAC AACAGCAATGACTTCAACTTCATCCTCCTCACAAACAGAAAATTCTTCGTCAATTTCCATTTTTCTTCTTGTAACTTGTC TCTTCAATCTATTGAATATTCATCGATCCTGA
CDS sequence (LotjaGi4g1v0444300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGGGTTCCAAATTCAGATTTAGTGTCATTCTCCCAGTTCCAATCTAATGCGGATAGTTGGCTGAAAAACAGCGT CCTTCCATACTATCCGGCCACAAAGATCACATACATTACGGTTGGTGCTGAAGTTACAGAAAGTACCAATAATGCCTCTG CATTTGTAGTACCTGCCATGAACAATGTACATACAGCACTTAGGAAACTTGGGCTGCACAAAAAGATCAAAGTTTCAAGC ACTCTTTCCCTTGGGGTTATGTCCCGATCATTCCCTCCTTCTGCTGGTGCTTTCAATAGTAGTCATGCACATTTCCTGAA GCCAATGCTAGAATTTCTTGCAGAAAATCAGTCACCTTTTATGATTGATATCTATCCTTATTATGCATACCGAGATTCCC CAAATAAAGTGCCTCTAGATTATGCCCTGTTTGACGCATCCTCTGAAGTTATTGATCCAAACACTGGTCTGCTGTACTCG AACATGTTTGATGCCCAGATTGATGCTATTTACTTTGCACTGATGGCTCTAAATTTCAGAACAATTAAGATCATGGTCAC TGAAACGGGTTGGCCTTCCAAAGGGTCGCCTAAGGAGAAGGCTGCTACTCCTGACAATGCACAAACTTATAACACTAATC TGATAAGGCATGTTATCAACAACACCGGTACTCCTGCAAAGCCTGGGGAGGAGCTTGATGTTTACATTTTCTCATTGTTC AATGAAAATAGAAAGCCTGGTATGGAATCTGAGAGGAATTGGGGATTATTTTACCCGGATCAGACAAGTGTGTACAATCT AGATTTCACTGGACGAGGTGCTGTTGATCTGACTACAAAAGCAAATGTAACAAGGTCAAATAAAACAACATGGTGCATTG CTTCAAGTAAAGCGTCACAAATTGATTTGCAAAATGCCATAGATTGGGCCTGTGGTCCTGGCAATGTGGACTGTACTGCT ATCCAGCCTAGCCAGCCTTGTTTTGAGCCAGACAACCTAGCTTCACATGCATCTTATGCTTTTAATAGTTACTACCAGCA GAATGGGGCATCTGATGTTGCCTGTAGTTTCGGTGGTACAGGTGTAAAAGTCGACAAGGATCCAAGCTATGACAAGTGCA TCTACATGAGAGCTGGCAATAATAAAACTGTGGGAAGCAATACAACAGCAATGACTTCAACTTCATCCTCCTCACAAACA GAAAATTCTTCGTCAATTTCCATTTTTCTTCTTGTAACTTGTCTCTTCAATCTATTGAATATTCATCGATCCTGA
Protein sequence (LotjaGi4g1v0444300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGVPNSDLVSFSQFQSNADSWLKNSVLPYYPATKITYITVGAEVTESTNNASAFVVPAMNNVHTALRKLGLHKKIKVSS TLSLGVMSRSFPPSAGAFNSSHAHFLKPMLEFLAENQSPFMIDIYPYYAYRDSPNKVPLDYALFDASSEVIDPNTGLLYS NMFDAQIDAIYFALMALNFRTIKIMVTETGWPSKGSPKEKAATPDNAQTYNTNLIRHVINNTGTPAKPGEELDVYIFSLF NENRKPGMESERNWGLFYPDQTSVYNLDFTGRGAVDLTTKANVTRSNKTTWCIASSKASQIDLQNAIDWACGPGNVDCTA IQPSQPCFEPDNLASHASYAFNSYYQQNGASDVACSFGGTGVKVDKDPSYDKCIYMRAGNNKTVGSNTTAMTSTSSSSQT ENSSSISIFLLVTCLFNLLNIHRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 269 | 269 | 5.8E-109 | – | |
| SUPERFAMILY | 1 | 268 | 268 | 1.14E-73 | ||
| PANTHER | 1 | 404 | 404 | 8.8E-213 | – | |
| Phobius | 1 | 402 | 402 | - | – | |
| PANTHER | 1 | 404 | 404 | 8.8E-213 | – | |
| Pfam | 2 | 269 | 268 | 8.5E-82 | ||
| ProSitePatterns | 182 | 195 | 14 | - | ||
| SMART | 290 | 375 | 86 | 3.3E-45 | ||
| Pfam | 290 | 361 | 72 | 8.0E-21 | ||
| Phobius | 403 | 421 | 19 | - | – | |
| Phobius | 422 | 424 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0444300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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