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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0444900 |
| Transcript ID | LotjaGi4g1v0444900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 2 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|A0A0S3SCC0|A0A0S3SCC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0444900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81782518..81786949) extracted from Lotus japonicus Gifu genome v1.2.
CAGCTCCCAACAATAAGTTCTATAGATCTGATTTCTAGGTGCTTCATTTTACTTTTTTTTTTTGTGGGAACCGGGATTTT GTATTACTGTCAAATAGCAAATTCACCCATGTTCTGTCAATGCTTTCTCATGGAATACTGAGGTGGATTGATTTTAGCAA TCTTAAAAAATAAAAGATTTCCTGCAGTATTAGTCATGTGAAGTTCTTTGCAATGGTTCTCACATGGCTTTTATGCCTCA ATAGATATTAAAAACTGAGAAATCAGAAGCAAGAAACTATTCGGTGCCTACAGAAGTGAAACCACCACATCTGTTCATCC TTCTGAGGTATGTCATGGTTCAATAACTTAGTATGAGCACACATTTGATAAATTTGCAAAACTGAAAAAATAACATTTGT ATAGCTTATAGATTTTCAATATCTTTTCTTATGCTTATCAGGAGTAATAAGAAGAGATTTGAGCAGAAGTAGATTTTCTA AGATTTTATATTTCTAGTTTTATCAGGGTATTGTTTACCCTCATATGAATCAGGGCTTTCGGTGCTTTGTGGTATCATTT GTCAGAGAATTCTAACAAATTTTACTGTTACTTATATCATTCTATTGTCTTGACCCTATCCATCAACCCTTTGAGCTTAT CGTTATCTCTCTGCCCCCCACCCCCACCCAATCTTTGGCTGTCTTTTTGGTTAAAAAGTGGAATCAAATAGTTGTTATTA CTATTGAATGCCTTAAAAACCTGTAATGAGTATGAACATATATGTATGCTTGTGTGTGTGTGTGTCAAATATATAATTTG TCATATAATTTTTTTAGCTTCTAAGACAAATGTTAATGGAGTGTGTAATTTTGTTCTTGCTGTGTAGTTCTTTCCTTGGT GTTTCTAATTGGTTGGATACATGACATAGTTATGTCACACTTGCTATCTGACATTTCTAAGACACAGATCAATATAGCTA ATGATAGTCTGATTATTAAGCACCAGTTTAAAGTTCATTTCTCTGTCTGTATGATGGTGGTGAGTCGTGTAGTGATGTGA ATTCTGTTCAAACTTCAATGATATATTGAAGTTGAGTAATCTTTTGATAAATTTTTTTTACTTTCTAATTCGTTGGCGAA GTGGTTGATATATTGAAGACCAATGCTCTGTCTCTAATTCTTGATACATGCACTTGTTGTAGCTGATTTAATAATCTGCT AGTTTTTTTGTAAATTTAGGGCCCATAGGGCTTCCTCAGCTTTTTGGCTGTGGGCTTTTCGAAGTGTGGTATTTTTGGCC CAGCTCCACATGGAGCAGGGCTGAGTGGGGTGAACTGGGTTTATTTGACAGCTCTAATGGCTCAAATCTATTGCACTACT ATTTTCTTTTATTTTTTCAATAATTTCATTCTATGTTTCTGTGTAGGTACAGATCTGAGTGGGATAGAGGTACAGGTGTT CACTGTTCAAGTATAACTTGCAACATAAGGTAACCCTTGTCCTTGCTTTGTTGTATTAGGAGCTCATTCCCTTATGCATT TGGATGTGTATTGAAATTGGGTTGAAGGGTTTTTAATTGCAATAGTGTTTGTCTACTTTTCTCTACAGGCTCTGCACTCT TCAAATCTGGTTTTCTATCTTTGTTTCAAAAAAAAAAATTAGATTTTAGATATTTTACGTGTTATCCGTTCCTTTTTGGA TAAATGCTTCGATTACTACATAGAATGGTGCAAACATGGTGAATCCTGAACAAAGTTTTGAATCGCTGAAAGTTTGCTCT AGTTTTTTGTTTTCTTAACATAAATACTAACCTGATGTTACAACAAGCATGCCTGATTTTCTTGTTATTGTATTGCTAAT TTGAAATAAGTTGCTTTCTCATTTCATAAAGGGTTTTGTATGCCTAGCACCAAAATTGAATGGATTGATTTTTCAACAAG GATCTGATCTTAATAATATTATCCGGAAAAAATAGATTTTTGAACCAATTGTTTTGGTGGGTAACTTTCTTCTTTTTTAT CCCTCTAAAACTTTTTGTTTGTTTTGGGATTTTTTAGGAAATGGAGAAGGTGATGAGTCTGATGACCATTCTGAAGCCTA AGCCAAATCCACAGCAGCTTCTGAGGGAATGGCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGGCAAATTGGC GGTAATCCCCCTTTCTCTCTCTGTTAAACCCTAATTAATTTCTTCTTCTAATTAATTGTGGTTATGCCTAATTTTTTGTA TTTTTGGGTTTCAATTTAGATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCGATTAGAGAAGCTGCCAAGATGAATGA CATTGGCTCTGCAAAGGTTCTTTCTTTTCCTTTTTGCTGTTGATTTTCCAGTGTTGGTGCTTTCTTTTCTTTCATTCTGC ATATCCCTAATTCATTGTATCTATTTTATTCTGATTGTAGTGGTTTTCTAGATGGGGTTATCCGAGCATTTAAGGTAAAA TTGCAGGTTTTTTATCTAAATCTATCTATGAATGACATTGGACTTGTTAGTTGTTACTTGTTAGGACTGGTCAGTGGTCA CAATATTCAAAAAATTAATGATAAAGCTATTTATGGGTTGTACTAGACTACTCGTGTAGTATCCTTTAGACAGTTATTTT TTATATCTTCTGAAGTTCAAGGTTCAACAGCATAGTCAGTATTTTGAGAACTTTTCTGCTTATGATGATATTTATGCAAT TTGCAGGCACTCGCTAAGGAACTTGTGAGATCTAGAAAAACAGTGAACCGGCTTCATGAAAATAAGGCACAATTGAATTC AATATCAATGCATCTCGGAGAGAGTGTTGGTAGGTTTTACTGTTTTTGTCAACCATAACTTACATATTATGACTAGCAAA TTAAAAAATGTCAAAGATGACTACTTGTGCTTGATCCCATTTGTTTGATAATTGATTCTTAATTGAAAAAAAACTTCAAT TTGCATCCATCACTCTTGGTATAGGGTGTTGGATATGTTGATGATCAATTTGTTGGTTGTGGGGAAAAGAACAACTGACA ACGATATGTATTTGACTCTGCTGAATTATTGTGGTATACTATGGTGATGAAATTGTTCTGTCCAATTTATAAGTTTAGTG AGGACTTTAAACCAAACCAGTAATAGAGGGGGAAGGAAGAGCGTGCAAGGGTGGTAGGTTGAGTCATGTGTTATCAGGTT CAGCTTTCTTATTTTCAGTATTTCTTATTTGTCCTGACACTATAACTACTGTTACAAATCATATATATGTAATGATCTTG CTGTACCTGTTTTTATTCAATAGCTAAGTGTATTATTTAGATGATTTATTTGTTGTTGTAGCTGTAGCTTCTTTTGCAAT TAGTCATCGTGATAGATTTGAGTTATTACTTATTTGTTATATGGAAATTCATGATTTGGTTGCTTTTGCAGCTATTGCTC GTACTGTGGGACATCTATCAAAGAGTGCTGAGGTTATGAAACTCGTTAATAACCTCATGAAGGCTCCTGAAATGGCTGTA GCAATGCAAGAGTTCAGCAAAGAAATGACAAAGGGATGTTGCAACACTTCAAGGGTTGGGGAAAGAAAGCACTCCTTTAA CTCCTCTATCCATTGTCTGTGGTTACAGAAGAGAGCTGCATAGTATTTATCAGGAATGTTATCTCTTTCAGGCAGGCATT ATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGACTCCGAGGACATAGAAGACGAGATGGAAGAAGAAGTTGA TAAAGTCTTAACTGCTATAGCTGGTGAGACAGCCGCGCAACTTCCTGAATCTGTGAGGAAAGTAAAGCTGAAGCAACCTG CTCAAAGCGTTGGAGCCACAGAGGTATGTGCAGTTCATTTTCCTTATAATCACTAATCAGGCTCTTTTCTGCCTGAGTTA CACTAATTATGGAATCCATTAGCATTTGTAGGACGTGGCTATAGCCGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAA TAAGGGCTCGACTTGCTAAAGTTCGGTCACAAGTTTAGTCTTGCAGCCTCTACACTGCATCTATTTAACATATTTAGATT AGAACAGGCGACTAATATTATTGATGGGAAAGAGAAAACTGACTGGGATAGGCCGTTCGCGTGATTATCAATGTATAGAA TTTTTTAGTTTATTAGATTGATTAAGTGCAAAACTGCATTCACTGTTGAGGATTTATTGTACAGTGCTTAAAATTGCCTT CAAGAAAATATGAGCTAATTTCTTTTCTTTTCCAGTCTTAGAACACTTCTATCCAGAGATCCAGATGTATGACTTCTCCA ATTAATAACCAATAGGCAACTTTATACACTCAGAAGTCACTGCTAGATGAGGTCAACGGCTTGAAAAGGTAAAAGAAAAC TTGAGTTGAGCCCTACAGATCCCTGCACCGGA
CDS sequence (LotjaGi4g1v0444900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACATTGGCTCTGCAAAGTGGTTTTCTAGATGGGGTTATCCGAGCATTTAAGGCACTCGCTAAGGAACTTGTGAGATC TAGAAAAACAGTGAACCGGCTTCATGAAAATAAGGCACAATTGAATTCAATATCAATGCATCTCGGAGAGAGTGTTGCTA TTGCTCGTACTGTGGGACATCTATCAAAGAGTGCTGAGGTTATGAAACTCGTTAATAACCTCATGAAGGCTCCTGAAATG GCTGTAGCAATGCAAGAGTTCAGCAAAGAAATGACAAAGGGATGTTGCAACACTTCAAGGGCAGGCATTATTGAGGAGAT AGTAAATGATGCTGTTGACACAGCACTAGACTCCGAGGACATAGAAGACGAGATGGAAGAAGAAGTTGATAAAGTCTTAA CTGCTATAGCTGGTGAGACAGCCGCGCAACTTCCTGAATCTGTGAGGAAAGTAAAGCTGAAGCAACCTGCTCAAAGCGTT GGAGCCACAGAGGACGTGGCTATAGCCGAGGGTGTTGATGATGAGGAAGAAATGGAAGAAATAAGGGCTCGACTTGCTAA AGTTCGGTCACAAGTTTAG
Protein sequence (LotjaGi4g1v0444900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLALQSGFLDGVIRAFKALAKELVRSRKTVNRLHENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEM AVAMQEFSKEMTKGCCNTSRAGIIEEIVNDAVDTALDSEDIEDEMEEEVDKVLTAIAGETAAQLPESVRKVKLKQPAQSV GATEDVAIAEGVDDEEEMEEIRARLAKVRSQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 21 | 11 | - | – | |
| PANTHER | 16 | 190 | 175 | 7.2E-90 | – | |
| PANTHER | 16 | 190 | 175 | 7.2E-90 | – | |
| Pfam | 17 | 147 | 131 | 3.9E-17 | ||
| Phobius | 22 | 192 | 171 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi4g1v0444900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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