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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0448100 |
| Transcript ID | LotjaGi4g1v0448100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein kinase; TAIR: AT4G28980.1 CDK-activating kinase 1AT; Swiss-Prot: sp|O80345|CDKF1_ARATH Cyclin-dependent kinase F-1; TrEMBL-Plants: tr|G7L878|G7L878_MEDTR Cyclin-dependent kinase; Found in the gene: LotjaGi4g1v0448100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82042652..82044890) extracted from Lotus japonicus Gifu genome v1.2.
ATATATATCTTTCCTTTAAATTTTTTCAACAAATAGTAGATGAGGCAAAAGAACTAGAGAAGAAGAGATTACAGGCGTTG AAGAAGCTGAAGTGAGTGAGATGGAGCGTCGACCCAAGAGCTGGAGCATCCATACCCGAACCGAGATCACCGCCAAGTAC CAAGTCATGGACCGGATCGGCTCCGGAGCTTACGCCGACGTCTACCACGGCCGCCGTCTCTCCGACTACCTCACGGTGGC TCTCAAGGAGATTCACGACTACCAGTCCGCCTTCCGAGAAATCGAGGCTCTCCAGATGCTCCAAGGCTTCCCAAACGTCG TCGTCTTGCACGAGTACTTCTGGCAAGAAGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCCGTACTGACCTCGCCACC GTCATCGCCGACGCCGCCAAACATGGAGGTCTCCCCGTCGGCGAGATCAAACAGTGGATGGTCCAGATTCTCTGTGGCCT CGATGCTTGTCACCGGAACTCGATCGTTCATCGTGACTTGAAGCCTTCTAATCTCTTGATTTCTGAAACTGGTGTCCTCA AATTGGCAGATTTTGGACAAGTAGCCTAAGCTCATCAATCTCATTTTTCTATGTTGATTTTTAGGGTTCATATCTGCATA AACCTAATTTGAGGATTGTAGTTTGTAATTGATGTGAATGTGTAATGCATAATAGATTTGTGATTATCTGTATAATTTTT TATCTGCAAAATTGACTATGATTATGTGAGTTAGTAATTTTGTATTCTGCAAATTTGACTATTTTTCTCAGGCAAGGATA CTTACAGAACATGGATTTGATGCTTCAGAGATGAACCAACAACCATTTGAACATGATGCAGCTAATCATGAAAGTTCACT TCAAAATCAACCTGAAGGTTTTCCTCAGACAGACAGCTTAGGCCAAGCTGGATATGGAAATCAAGAGGAGGGAACCATTT CTCATGAAGAGCATTATAGAGTTTTAGATGAGGTGGAAGCGAAGAGCTCTGCGGATGACTTTGATAAGGATACAGACATT CATGATGGGAATACCTCTTGTCGTGCGACGTGCACGACGAATGACATGGATAACGATCCTCTAGAGACTTCTTTTAGTTA TGAAGCAATGGAGGAGGAAGGTAAAGAGCTCGGGTGTCTGACATCGTGTGTTGGAACTCGTTGGTTCAGGGCGCCTGAGT TGCTTTATGGATCGACAAATTACGGTTTCGAGATTGATCTCTGGTCCTTGGGGTGTATATTTGCAGAGCTTTTGACTCTG AAGCCATTGTTTCCTGGAACTGCTGACATTGATCAGCTCAGCAGGATTATTAATGTTTTGGGCAACCTTGATGAGAAAGC TTGGCCTGGTTGTTCGAAACTTCCTGATTATGCAATAATCTCGTTTAGCAAAGTAGAAAACCCTCCTGGTGTTGAAGCCT GCCTCCCCGACCGCTCCCCCGATGAAGTGTCTTTGATAAAAAAACTGGTTTGTTATGATCCAGCCAGGAGAGCTACAGCA ATGGAACTCCTCCATGACAAGTACTTCAGTGAAGAACCTCTTCCTGTTGCTGTTTCTGAGCTTCGAGTTCCTTTAACTAG GAAAGGACAGGACGAGGATTCGCTTGGTGGATATGATTACAATGACATGGGTTCTGATTCTGATTTTGATGACTTTGGCC CTATGAATGTCACCAAAACTGGTACTGGTTTCTCCATACAGTTCCCTTGAGCTGTTAAGCTCCATATTCTTGGAACCACC CTTGCCATTTCTGTTGTTCAACTGGTATTTTAATTGCTGAACATCATCTGGAGAATCCGCAGTGAGAATAATTGATAAGG AAATCTCAAATTCTTCCTCTGTTTTGACATGATGTGTGAACAAAGGGGTAAAATATTGAAAATCAAGCATGATGGATTAT GTGTTATAGTGATATCCATAGTTGATGTAGTACAACATTATGTAAACGGTAAACATTTCTTTCACATCACTTTTCTCTAA AGGTAGAACAGCATTATGTAAACCAAAAACATTCCTCTATTTCCTCATGTATGCAAGTTATCAAATTCTCATAAATGAGA ACCCAACAATTGTTGGGCACCCTAAAAGTACATTGTTATTGTGGATAAATACTACTTGCAATGACATTTCTGAGTTGCCA CTGGATTTATCTAATCACCACTCCTCGTCTAAGAGTTAATCTCATAGTTATCTCTATTGGGGATATTATTCAAGGATGA
CDS sequence (LotjaGi4g1v0448100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCGTCGACCCAAGAGCTGGAGCATCCATACCCGAACCGAGATCACCGCCAAGTACCAAGTCATGGACCGGATCGG CTCCGGAGCTTACGCCGACGTCTACCACGGCCGCCGTCTCTCCGACTACCTCACGGTGGCTCTCAAGGAGATTCACGACT ACCAGTCCGCCTTCCGAGAAATCGAGGCTCTCCAGATGCTCCAAGGCTTCCCAAACGTCGTCGTCTTGCACGAGTACTTC TGGCAAGAAGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCCGTACTGACCTCGCCACCGTCATCGCCGACGCCGCCAA ACATGGAGGTCTCCCCGTCGGCGAGATCAAACAGTGGATGGTCCAGATTCTCTGTGGCCTCGATGCTTGTCACCGGAACT CGATCGTTCATCGTGACTTGAAGCCTTCTAATCTCTTGATTTCTGAAACTGGTGTCCTCAAATTGGCAGATTTTGGACAA GCAAGGATACTTACAGAACATGGATTTGATGCTTCAGAGATGAACCAACAACCATTTGAACATGATGCAGCTAATCATGA AAGTTCACTTCAAAATCAACCTGAAGGTTTTCCTCAGACAGACAGCTTAGGCCAAGCTGGATATGGAAATCAAGAGGAGG GAACCATTTCTCATGAAGAGCATTATAGAGTTTTAGATGAGGTGGAAGCGAAGAGCTCTGCGGATGACTTTGATAAGGAT ACAGACATTCATGATGGGAATACCTCTTGTCGTGCGACGTGCACGACGAATGACATGGATAACGATCCTCTAGAGACTTC TTTTAGTTATGAAGCAATGGAGGAGGAAGGTAAAGAGCTCGGGTGTCTGACATCGTGTGTTGGAACTCGTTGGTTCAGGG CGCCTGAGTTGCTTTATGGATCGACAAATTACGGTTTCGAGATTGATCTCTGGTCCTTGGGGTGTATATTTGCAGAGCTT TTGACTCTGAAGCCATTGTTTCCTGGAACTGCTGACATTGATCAGCTCAGCAGGATTATTAATGTTTTGGGCAACCTTGA TGAGAAAGCTTGGCCTGGTTGTTCGAAACTTCCTGATTATGCAATAATCTCGTTTAGCAAAGTAGAAAACCCTCCTGGTG TTGAAGCCTGCCTCCCCGACCGCTCCCCCGATGAAGTGTCTTTGATAAAAAAACTGGTTTGTTATGATCCAGCCAGGAGA GCTACAGCAATGGAACTCCTCCATGACAAGTACTTCAGTGAAGAACCTCTTCCTGTTGCTGTTTCTGAGCTTCGAGTTCC TTTAACTAGGAAAGGACAGGACGAGGATTCGCTTGGTGGATATGATTACAATGACATGGGTTCTGATTCTGATTTTGATG ACTTTGGCCCTATGAATGTCACCAAAACTGGTACTGGTTTCTCCATACAGTTCCCTTGA
Protein sequence (LotjaGi4g1v0448100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERRPKSWSIHTRTEITAKYQVMDRIGSGAYADVYHGRRLSDYLTVALKEIHDYQSAFREIEALQMLQGFPNVVVLHEYF WQEDEDAVLVLEFLRTDLATVIADAAKHGGLPVGEIKQWMVQILCGLDACHRNSIVHRDLKPSNLLISETGVLKLADFGQ ARILTEHGFDASEMNQQPFEHDAANHESSLQNQPEGFPQTDSLGQAGYGNQEEGTISHEEHYRVLDEVEAKSSADDFDKD TDIHDGNTSCRATCTTNDMDNDPLETSFSYEAMEEEGKELGCLTSCVGTRWFRAPELLYGSTNYGFEIDLWSLGCIFAEL LTLKPLFPGTADIDQLSRIINVLGNLDEKAWPGCSKLPDYAIISFSKVENPPGVEACLPDRSPDEVSLIKKLVCYDPARR ATAMELLHDKYFSEEPLPVAVSELRVPLTRKGQDEDSLGGYDYNDMGSDSDFDDFGPMNVTKTGTGFSIQFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 471 | 471 | 3.3E-200 | – | |
| PANTHER | 1 | 471 | 471 | 3.3E-200 | – | |
| Gene3D | 3 | 203 | 201 | 8.0E-41 | – | |
| SUPERFAMILY | 6 | 425 | 420 | 1.73E-76 | ||
| Pfam | 20 | 168 | 149 | 2.7E-33 | ||
| SMART | 20 | 412 | 393 | 1.1E-78 | ||
| ProSiteProfiles | 20 | 412 | 393 | 37.969 | ||
| ProSitePatterns | 26 | 49 | 24 | - | ||
| ProSitePatterns | 135 | 147 | 13 | - | ||
| MobiDBLite | 182 | 211 | 30 | - | – | |
| Gene3D | 239 | 426 | 188 | 6.1E-36 | – | |
| Pfam | 278 | 412 | 135 | 1.1E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi4g1v0448100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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