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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0449800 |
Transcript ID | LotjaGi4g1v0449800.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras family protein; TAIR: AT4G19640.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P29687|RAB5_TOBAC Ras-related protein Rab5; TrEMBL-Plants: tr|G7L8X6|G7L8X6_MEDTR RAB GTPase-like protein A5B; Found in the gene: LotjaGi4g1v0449800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82203570..82206396) extracted from Lotus japonicus Gifu genome v1.2.
ACGGTCTCATAACCATAATTTTGGTCTTCCAGCTCCATCTTTTGTCACTGCTAACATCTGATTGCATTTTCTTTCAATCT TTGAAAATCCTTCTCTGCTAACATAAGAAATATTCTACTTTTCCATTCATCTGCTAAGCTATGGCGAGGACCGGAAACAA GAGTTTACAAGCCAAACTGGTAGGTATGTCTTCCCTTTTCTTGATTTGATGAAGAAGTGAAGAACCCAAATAGCTCTTGC TTGAGCTTGACACATTAGGTGTTAATACAGAACAACATATTACTTATTTAGTTCTTGTTACATTTTGCATGACATGTCTA CCACTAAATTAAGCACTTATGGCAATAAGCGCTAATGACATAAACTAATTTGAAAAACTTATTGAAATAAGCTGAACAAA ACTTATGAAAATAAGTTTAACACAACTATAGGTGAATCATAAGCTATTTACATAAGCTCTTCATAATAGTTGCATAAATA CTTATGCTATAATATAAGCTGCAATAAGCTCTTCCAAACGGTTATATTGTCTATCTATTAATCAGCTTAAGCTCCTTTTT TTGCTAATTAGTTTCTGATCATATGATGCTTAATTAGAAGAAAACATTCTCAAGTTGTTAACTTCATCTATGATTCCGTA GGTGCTTCTTGGAGACATGGGAACAGGGAAGACAAGCTTGGTTCTTAGATTTGTCAAAGGCCAATTTTCTGAGTACCAGG TTGCTGTTGTTTCTCTTTCCATACTTTATTATTTTGATTTTAGCTATGTTTGGATACTCATTGGCCTGTGCAAATAAGCT CACATTGAGATGAAAGTGAACATAACTATTCTTATTTCTTATGGATTAAAATGAAAATTCATTCATGTTACACGTACTCA ATTGTTATCCAAACACATGTTTTCTTCATGCCCTTCACATTATCGTAGTGGATAAACATTAATGTATGTCTGCAGGAATC AACAATTGGAGCAGCATTCTTCACTCAGGTTTTGTCTTTGAATGAAGCCACGGTGAAGTTTGATATATGGGACACTGCAG GGCAAGAACGATACCACAGTTTGGCTCCTATGTACTATCGTGGTGCTGCTTCTGCTATAGTTGTCTATGACATTACAAGC ATGGTAACTGCTAAATACTAACTAAATATTAAGTGTATGCTTGAAAATTCTTCTATAACTGACTTGAAAGACAGTCAATC AATTTTTCGAAGAAGCATTAGAATCGATTTTGACGAAAGAGAAAAACATGTCTAATTGATGATTATTGGTAGTGTTTTGG ACGGAATAATCTTCATTTTGCTTACAAGTGATTAGTTGTTTTGGAAAAAGAATTTCACTAGTTCATGATTATTCTAATGT GTGTAACTTTTATGAGGTTCAGTCTTATGTTCTGTTTAGGTGTTTATTACAGAATCTCTAAATACATTTACAGTGAAAAC TTCCCAGACTGATGCACTTTCTAACTCATCAGGAATCTTTTGTGAGAGCAAAGAAGTGGGTTCGAGAAGTGCAAAGACAA GGTAGTAACTATCATCTAAAAGCAAATGTTTTGTGAACAATCTTGAGAAACATTGAGCTTAATATGAATCATCTGAACCA GATTTCTATGTAGTTCAACATAGCATTGTTGGAAAGTTTATCAAAAACTTCATAAGATGATACTAATTTGATGTTTTGCT TAATTTGAAAAATCATGTCAGCAAATCCAAATTTGATCATGTTTTTGGTGGCTAACAAGGCTGATTTGGAAGATGAGAGA AAAGTCAGAAATGAGGTATTTCTAGTGAATTGTTCTCTTTACTTTATGATTTGCTTATTATACGATTTTCAGAGGTTCAT TTGTGATCTTTATTCTCAGGAGCCTACACTAATTGACCCTTCACCCTTGCCCTCATTAGAATCTGTTTTGGTAATCATCT CTCATATGATTGTACTTGTATTAATGGTTGCAGGATGGTGAGGAATATGCCAAAGAAAATGGTATGACCTTTTTTGAAAC TTCAGCAAAAACCGCACAGAATGTCAATGAGCTCTTCTATGAAATAGGTAAAATAATATAACTTACAAGTTTGGATCAGC TTCTCTTTTATCAAAATCAATTCTGAAACCTAGAAGCTGCTCACAGAAACTACTCCCCATAATTGATTCTGACTCCAGTG TTGTATATGTATAATGCATTTTCTGAGAGAATTTGTTTGGCAAACTTCTAGGAATTTAACCAATTGATCAACAGTTCCGG GGAATTTTAATTGTTCCTATGTTTGCATAAAATCCGTATTGCCACTTCTCAAAGTTGTGGGTTTCCAGACCTTAAAATCT GAATGGGGTGACACTAATGATTGTTAAAAACTTCCATGTTCAGATTTATTACTTACAGAAACAAATTTTTGCAGCTAAGA GATTGGCAAAAGCTAATCCTTCACGTCAAACCGGAATCAAGCTGCAAAGCAGACCTCAAGAAAGAAGAAGAATGTTTTGT TGTGCTTAATAGCATGTCTTTGATCTTTTCAATTTGAAAGTATCGTTATGTTTAATGGCATGTCTATTGTACTCAAATAA ACTTGGATACATAACTCTAATACCAAGTTCTCACTGGGGAATCATCAAATCACTCACGAGTTGGCCTGCTACTTAAGGAG TATGGACCAGTGAGAACCAGATCCATTGTTTATCTCTACATGCTTTCTCAGACAAGAAGTCAATGTACATTGTATGATGT TACACCCTAAGTTGGTAACATTTGGTGTGGGCGAATTTCTCTTTGTTTGTTCCAACAGACAAAGCTTTTTTTTCTTTAAT TGAATGTTGTATTTGTTCATTTATATA
CDS sequence (LotjaGi4g1v0449800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTATCGTGGTGCTGCTTCTGCTATAGTTGTCTATGACATTACAAGCATGGAATCTTTTGTGAGAGCAAAGAAGTG GGTTCGAGAAGTGCAAAGACAAGCAAATCCAAATTTGATCATGTTTTTGGTGGCTAACAAGGCTGATTTGGAAGATGAGA GAAAAGTCAGAAATGAGGATGGTGAGGAATATGCCAAAGAAAATGGTATGACCTTTTTTGAAACTTCAGCAAAAACCGCA CAGAATGTCAATGAGCTCTTCTATGAAATAGCTAAGAGATTGGCAAAAGCTAATCCTTCACGTCAAACCGGAATCAAGCT GCAAAGCAGACCTCAAGAAAGAAGAAGAATGTTTTGTTGTGCTTAA
Protein sequence (LotjaGi4g1v0449800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYYRGAASAIVVYDITSMESFVRAKKWVREVQRQANPNLIMFLVANKADLEDERKVRNEDGEEYAKENGMTFFETSAKTA QNVNELFYEIAKRLAKANPSRQTGIKLQSRPQERRRMFCCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 120 | 120 | 5.3E-45 | – | |
SMART | 1 | 97 | 97 | 2.2E-13 | – | |
ProSiteProfiles | 1 | 121 | 121 | 20.592 | – | |
PANTHER | 1 | 120 | 120 | 5.3E-45 | – | |
Gene3D | 1 | 120 | 120 | 1.7E-36 | – | |
Pfam | 1 | 94 | 94 | 2.3E-30 | ||
SUPERFAMILY | 1 | 106 | 106 | 4.83E-29 | ||
SMART | 2 | 97 | 96 | 1.7E-6 | – | |
TIGRFAM | 2 | 90 | 89 | 6.9E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0449800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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