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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0450600 |
| Transcript ID | LotjaGi4g1v0450600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine incorporator; TAIR: AT3G24460.1 Serinc-domain containing serine and sphingolipid biosynthesis protein; Swiss-Prot: sp|Q13530|SERC3_HUMAN Serine incorporator 3; TrEMBL-Plants: tr|K7KRM5|K7KRM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0450600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82264014..82268329) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAACTGGGGTAAGCAACAATGGTAATGAGGCGTGTACCATATCCAAGGATACCTCATGGTGGGGTCAATTCCGTAA TGCATCCAATCCTGGGATGGCAAGATATGTCTATGCCTTGATGTTTCTTGTGGCAAATCTGTTGGCATGGGCTGCCCGTG ATTATGGTCGTGGTGCTTTAACTGAAATGGAGAGTAAGATTGCTAAAACCCTCACATTGATGAACTTTCATATCCTATAT ATGTGAGAGTGAACCCGTGATTATTTTGGAAAAACCTTTGAATTTATGTCTTAATCTTAGTTATTTATGGTTAGGTCTAA TAATTAAAATTTATATGTGTGTATATATATTGGAGGTTCCTAATATACTCACTTGTTTTATAGAATGAGTACGATACTCC TTTTAAAAAATAAGTCGAGCACTTTTTTTTCAGAGTAGTATGTTAGCAAATGATGAATAATATAATCATACAATCATAAA TCATTTAATGGTTATATAACCACTTGAAATGTCATTTGACTTTCTAAACAATTTACATGACCTCATTTTTACAGGGAATG TAGCAAATGGGATGGAATTTTTCATTTGAAAGTGAGCTAAGTAGCTAACAATTAATAGTTAAGATTAAAGCATTAAATCA TGATTATTTAAATGATTTATGTGACTATTAAATAACTTTTAAGCTTAATATATGCTTGAGATTTATATATCTCACTTTCA TATAGAAATGGCCCTCTCACTACATACATCTATATTGAAATAGTTTTCTCCTTAAAATTCACCGTCTTAGCCAGAAAATC TGATGTCTCATCTGAATGCACACTTTATTCTATAACAATATGCTGGATTAGATATTATGAAGAATATTCAAAAGTTCACA ATGTACATAATGCTATCCATTGAAATTGTTTGATGACCAAAGTGGAATGAAAAAGCATTAATTTACAAATTCTGAACATT AGAGGGGTTTGTCTATCCGTCTATCAATGTTGGCAAATCGTTCACTTCAATCAATAGAAATTGTTGGGTGTCCTCATGTA CACATATGGGACGACTAGATCATTTTCCTTCGAACTTAAAGCTGTTTTCATCTAAGGTTGTTATCTCCATAATCCATATC ATGCCATTGACTTCAAATCTAATGTATTGAACTGAACCTACAGGATTAAAAGGATGCAATGGTGGAAAGGACTGTTTGGG TGCTGAAGGTGTTTTGCGTGTGAGTTTGGGTTGCTTTGTATCCTTTTCAATTATATGCATGAAAATATTTGCTCAAGACT TCATATAAGTTTGTAGCCAAGAAAAGAAAGCTTTAAGAATATTATCAGCCAGTAATTCTATTGATTTCTGCTAGGGGTAA AATAAAAAACAAAAACGTATGTTTACACATTGACATATGTGTTTTATCATAATTTAGTCACTTATCTTAGGTCAATTTCA TAGTCCTTTAGCATTTAAGATGAACCTTAATACGAATTCAGATATTTTATTTCATAATGTTTTTGACAACTGCCCGCACT TCTAAACTAAATGAAGTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGATTGTTCTCTGGGTTGGCATGACTGT CATCCCATTTTTACTCCCTTCAGAATTTATACAGATTTATGGTTAGTAAGTTTTTTCTGCCAGCTAGCCTCCAAGTATTA ATGCATCCTCCATGATATCAAAAGTTGTAACATTGTCATTCATTTGATGCACATTTTTTTTTTTTGCCAGGGGAGGTGGC GCATTTTGGTGCCGGGTATAGTTTTGATCTCTCACAAATTATTTTCTCATGCCATTTTTCCCAAACTAATCTGTGATTTT TTGAAGTGTTTCTGTATTTCCTTTTCAGGGTTTTCCTCCTAATTCAACTAATAAGCATTATCAGCTTCATTACTTGGCTA AATGATTGCTGTGAGTCAGAAAAATATGCTGCAAAATGGTAAGATTTTATCAGTTAGAGAACTATTAGAAACACCTGCTT CCAAGCATGGGCTATATAAATTTTTAAAATTGGTTAATTTAATGTTTTAGTAAGGTATATTCTTTTAGAAATTGAATAAT TCAGTATTCTGCTTATATAAAGTGGAAAGGAGAAAATGTTTCTCGAATTTTCTAAATTCATATTAGCTTTCCGAGAGCAT TGAAAGTAATCAAGAGCTAGAGTGGGATTACCAGCTATTGTCTGATCTATATTATTTGAACTTATCTAGCAGTTTAGCAT TATGTGGCCAGCAATGGGGCAACAAACCTAAAATTATGCTTTTGTGCATTTTATCCCTTTTCCACTTGCAATGCTTTGAT AAGCTGACAAACAAGCTGATCTAATTGTATAGGATATCTATATCTTGAAATGTTTGCACTAATTATCAATATTTCATGCA GCCAAATCCATGTGATGTTATTCGCAACGACTGCATATGTTGTCTGTTTGGTGGGGATCATTTTGATGTTCATTTGGTAT GCACCAAAGCCATCTTGTCTGCTCAATATTTTCTTCATTGCTTGGACACTAGTACTTCTCCAACTTATGACAAGTGTGTC TCTGCACCCAAAAGTAAGTTCTATTTTTGTAGCAAGATCTTTGCTTGCTCAATTCACTTCATCGTATATCAGAACTTGAA GTGGAATTTCTTCATCTGCAATAGGTGAATGCTGGCATTCTAACTCCAGGGCTTATGGGGCTTTATGTTGTCTTCCTTTG CTGGAACGCTATTAGAAGGCATGACTACCGACTTTTACCTGATAGTTTTGGACTTAAATTGATGTTGATGTTGTCTTTAT CTTTTGATTTCTATTCATGCAACCCCTCTTGACTTCCCATTTTCATTTCTTTTGAATTAGATTTAGAATATTTTTGTATG CAGTGAACCTGATGGAGGAAGCTGCATCAGAAAGTCAGACTCTTCCACCAAAACAGACTGGCTAAGCATCATTGTAATAT ATATCTATATATTTGTCTATTCTTGTTTAACTGAAATTTGAACTGTGTTAGAACAGTTTTTTAAACTGATAGTTGTGAAT TTACAAATATATGCTCATTACCATTTTCATGTACATATATCCATTTAATATGTACCAGGAAAATCTGATATTGTTCCCAG AAAAATCAAGTTCAATATTTCTTGTCTAATTATGAAAAAATTTAAGCACATTTTAAGTCAAAATATATTTTGCCTTATGG TTGTGCATATTGTCATATCCCCTTTATGATTGCTCTGTGGCTAATTTGGAAATCTTTGAACTTCATTTTATTTTCATTGC TGGTTGACATGTGACAATGGCTCTTGTTGGCAGAGCTTTATTATTGCAATACTGGCAATTGTTATTGCGACATTTTCAAC AGGCATAGACTCCAAGTGCTTCCAGGTTAGTTATAATCCCTGAACTTTTCTTGAATTTCAATATTAGGTTCTCCAGTACA CATCTGACAGTTCCCTGCAGTTCAGGAAGGATGATGATATACCAGCAGAGGATGATGTACCATATGGTTATGGCTTCTTC CATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCTATGCTATTGATTGGATGGAATAGTCATCATTCTATGAGAAAGTA TGGCCCCCTTCCCTCCTGTATTTGGTCCATATCATGTTGTCTGCATCTTACTCGTGTTTCTTGTTTTGATTTGTTCTCCA ATATGAAAAAAAATAATGAGGGGTAAACAAAGCAGATGCATTTCCTGTCAGTTAATCTTACAATGATCATAGAAATCCAG GTGGCATAGAACCCAATAAATATGGTTCTCATATAGTTTAGAGGTAACTTATTTGCATGACACGATACCATTCTGGATAA GAGAATGTTACTGCAATCGATATTTTTTCCTGCTTCTCACTTATATAGGTTCATTCCGAGTTTGTTCTGTCTTTCTTTGA GTGCACACATAATATAATATCAAGTTCGTATGATGAAATACCTTATTCTTCTTCAGATGGACAATTGATGTGGGCTGGAC CAGCACCTGGGTCAGAATAGTAAATGAATGGTTGGCAGTCTGTGTTTATTGTAAGTATTTTGAGTTTGACTAGTGCTTTA AGAGTACTTCTTAACCATTCTCCTTTTAATAGAACCAAGTCTAGCATGAACATCTGAGTTTTAAATTGACATAATAAAAC AACTCATGCGTTTTAAACTCATAAAGAGATTTAGTAACTCTTCCTGTATATTTCTTGAACAAATGCAGCACAACTAAATA AAGTTTGAATGTTTTGACAGTATGGATGCTCGTAGCACCAATAATATGGAAGAGCCGACAAACCGATTCTACTTGA
CDS sequence (LotjaGi4g1v0450600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACTGGGGTAAGCAACAATGGTAATGAGGCGTGTACCATATCCAAGGATACCTCATGGTGGGGTCAATTCCGTAA TGCATCCAATCCTGGGATGGCAAGATATGTCTATGCCTTGATGTTTCTTGTGGCAAATCTGTTGGCATGGGCTGCCCGTG ATTATGGTCGTGGTGCTTTAACTGAAATGGAGAGATTAAAAGGATGCAATGGTGGAAAGGACTGTTTGGGTGCTGAAGGT GTTTTGCGTGTGAGTTTGGGTTGCTTTATATTTTATTTCATAATGTTTTTGACAACTGCCCGCACTTCTAAACTAAATGA AGTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGATTGTTCTCTGGGTTGGCATGACTGTCATCCCATTTTTAC TCCCTTCAGAATTTATACAGATTTATGGGGAGGTGGCGCATTTTGGTGCCGGGGTTTTCCTCCTAATTCAACTAATAAGC ATTATCAGCTTCATTACTTGGCTAAATGATTGCTGTGAGTCAGAAAAATATGCTGCAAAATGCCAAATCCATGTGATGTT ATTCGCAACGACTGCATATGTTGTCTGTTTGGTGGGGATCATTTTGATGTTCATTTGGTATGCACCAAAGCCATCTTGTC TGCTCAATATTTTCTTCATTGCTTGGACACTAGTACTTCTCCAACTTATGACAAGTGTGTCTCTGCACCCAAAAGTGAAT GCTGGCATTCTAACTCCAGGGCTTATGGGGCTTTATGTTGTCTTCCTTTGCTGGAACGCTATTAGAAGTGAACCTGATGG AGGAAGCTGCATCAGAAAGTCAGACTCTTCCACCAAAACAGACTGGCTAAGCATCATTAGCTTTATTATTGCAATACTGG CAATTGTTATTGCGACATTTTCAACAGGCATAGACTCCAAGTGCTTCCAGTTCAGGAAGGATGATGATATACCAGCAGAG GATGATGTACCATATGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCTATGCTATTGATTGG ATGGAATAGTCATCATTCTATGAGAAAATGGACAATTGATGTGGGCTGGACCAGCACCTGGGTCAGAATAGTAAATGAAT GGTTGGCAGTCTGTGTTTATTTATGGATGCTCGTAGCACCAATAATATGGAAGAGCCGACAAACCGATTCTACTTGA
Protein sequence (LotjaGi4g1v0450600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
METGVSNNGNEACTISKDTSWWGQFRNASNPGMARYVYALMFLVANLLAWAARDYGRGALTEMERLKGCNGGKDCLGAEG VLRVSLGCFIFYFIMFLTTARTSKLNEVRDTWHSGWWSVKIVLWVGMTVIPFLLPSEFIQIYGEVAHFGAGVFLLIQLIS IISFITWLNDCCESEKYAAKCQIHVMLFATTAYVVCLVGIILMFIWYAPKPSCLLNIFFIAWTLVLLQLMTSVSLHPKVN AGILTPGLMGLYVVFLCWNAIRSEPDGGSCIRKSDSSTKTDWLSIISFIIAILAIVIATFSTGIDSKCFQFRKDDDIPAE DDVPYGYGFFHFVFATGAMYFAMLLIGWNSHHSMRKWTIDVGWTSTWVRIVNEWLAVCVYLWMLVAPIIWKSRQTDST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| PANTHER | 11 | 398 | 388 | 5.0E-229 | – | |
| PANTHER | 11 | 398 | 388 | 5.0E-229 | ||
| Pfam | 25 | 304 | 280 | 9.9E-55 | ||
| TMHMM | 32 | 51 | 20 | - | – | |
| Phobius | 36 | 55 | 20 | - | – | |
| Phobius | 56 | 75 | 20 | - | – | |
| Phobius | 76 | 95 | 20 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 96 | 114 | 19 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 115 | 134 | 20 | - | – | |
| Phobius | 135 | 145 | 11 | - | – | |
| Phobius | 146 | 165 | 20 | - | – | |
| TMHMM | 146 | 168 | 23 | - | – | |
| Phobius | 166 | 184 | 19 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 185 | 207 | 23 | - | – | |
| Phobius | 208 | 213 | 6 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 214 | 235 | 22 | - | – | |
| Phobius | 236 | 240 | 5 | - | – | |
| TMHMM | 239 | 261 | 23 | - | – | |
| Phobius | 241 | 261 | 21 | - | – | |
| Phobius | 262 | 281 | 20 | - | – | |
| Phobius | 282 | 304 | 23 | - | – | |
| TMHMM | 282 | 304 | 23 | - | – | |
| Phobius | 305 | 323 | 19 | - | – | |
| Pfam | 319 | 394 | 76 | 6.2E-20 | ||
| Phobius | 324 | 346 | 23 | - | – | |
| TMHMM | 326 | 348 | 23 | - | – | |
| Phobius | 347 | 366 | 20 | - | – | |
| Phobius | 367 | 390 | 24 | - | – | |
| TMHMM | 368 | 390 | 23 | - | – | |
| Phobius | 391 | 398 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0450600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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