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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0450600 |
| Transcript ID | LotjaGi4g1v0450600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine incorporator; TAIR: AT3G24460.1 Serinc-domain containing serine and sphingolipid biosynthesis protein; Swiss-Prot: sp|Q13530|SERC3_HUMAN Serine incorporator 3; TrEMBL-Plants: tr|K7KRM5|K7KRM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0450600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82265510..82268329) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTTTGACAACTGCCCGCACTTCTAAACTAAATGAAGTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGAT TGTTCTCTGGGTTGGCATGACTGTCATCCCATTTTTACTCCCTTCAGAATTTATACAGATTTATGGTTAGTAAGTTTTTT CTGCCAGCTAGCCTCCAAGTATTAATGCATCCTCCATGATATCAAAAGTTGTAACATTGTCATTCATTTGATGCACATTT TTTTTTTTTGCCAGGGGAGGTGGCGCATTTTGGTGCCGGGTATAGTTTTGATCTCTCACAAATTATTTTCTCATGCCATT TTTCCCAAACTAATCTGTGATTTTTTGAAGTGTTTCTGTATTTCCTTTTCAGGGTTTTCCTCCTAATTCAACTAATAAGC ATTATCAGCTTCATTACTTGGCTAAATGATTGCTGTGAGTCAGAAAAATATGCTGCAAAATGGTAAGATTTTATCAGTTA GAGAACTATTAGAAACACCTGCTTCCAAGCATGGGCTATATAAATTTTTAAAATTGGTTAATTTAATGTTTTAGTAAGGT ATATTCTTTTAGAAATTGAATAATTCAGTATTCTGCTTATATAAAGTGGAAAGGAGAAAATGTTTCTCGAATTTTCTAAA TTCATATTAGCTTTCCGAGAGCATTGAAAGTAATCAAGAGCTAGAGTGGGATTACCAGCTATTGTCTGATCTATATTATT TGAACTTATCTAGCAGTTTAGCATTATGTGGCCAGCAATGGGGCAACAAACCTAAAATTATGCTTTTGTGCATTTTATCC CTTTTCCACTTGCAATGCTTTGATAAGCTGACAAACAAGCTGATCTAATTGTATAGGATATCTATATCTTGAAATGTTTG CACTAATTATCAATATTTCATGCAGCCAAATCCATGTGATGTTATTCGCAACGACTGCATATGTTGTCTGTTTGGTGGGG ATCATTTTGATGTTCATTTGGTATGCACCAAAGCCATCTTGTCTGCTCAATATTTTCTTCATTGCTTGGACACTAGTACT TCTCCAACTTATGACAAGTGTGTCTCTGCACCCAAAAGTAAGTTCTATTTTTGTAGCAAGATCTTTGCTTGCTCAATTCA CTTCATCGTATATCAGAACTTGAAGTGGAATTTCTTCATCTGCAATAGGTGAATGCTGGCATTCTAACTCCAGGGCTTAT GGGGCTTTATGTTGTCTTCCTTTGCTGGAACGCTATTAGAAGGCATGACTACCGACTTTTACCTGATAGTTTTGGACTTA AATTGATGTTGATGTTGTCTTTATCTTTTGATTTCTATTCATGCAACCCCTCTTGACTTCCCATTTTCATTTCTTTTGAA TTAGATTTAGAATATTTTTGTATGCAGTGAACCTGATGGAGGAAGCTGCATCAGAAAGTCAGACTCTTCCACCAAAACAG ACTGGCTAAGCATCATTGTAATATATATCTATATATTTGTCTATTCTTGTTTAACTGAAATTTGAACTGTGTTAGAACAG TTTTTTAAACTGATAGTTGTGAATTTACAAATATATGCTCATTACCATTTTCATGTACATATATCCATTTAATATGTACC AGGAAAATCTGATATTGTTCCCAGAAAAATCAAGTTCAATATTTCTTGTCTAATTATGAAAAAATTTAAGCACATTTTAA GTCAAAATATATTTTGCCTTATGGTTGTGCATATTGTCATATCCCCTTTATGATTGCTCTGTGGCTAATTTGGAAATCTT TGAACTTCATTTTATTTTCATTGCTGGTTGACATGTGACAATGGCTCTTGTTGGCAGAGCTTTATTATTGCAATACTGGC AATTGTTATTGCGACATTTTCAACAGGCATAGACTCCAAGTGCTTCCAGGTTAGTTATAATCCCTGAACTTTTCTTGAAT TTCAATATTAGGTTCTCCAGTACACATCTGACAGTTCCCTGCAGTTCAGGAAGGATGATGATATACCAGCAGAGGATGAT GTACCATATGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATGTACTTTGCTATGCTATTGATTGGATGGAA TAGTCATCATTCTATGAGAAAGTATGGCCCCCTTCCCTCCTGTATTTGGTCCATATCATGTTGTCTGCATCTTACTCGTG TTTCTTGTTTTGATTTGTTCTCCAATATGAAAAAAAATAATGAGGGGTAAACAAAGCAGATGCATTTCCTGTCAGTTAAT CTTACAATGATCATAGAAATCCAGGTGGCATAGAACCCAATAAATATGGTTCTCATATAGTTTAGAGGTAACTTATTTGC ATGACACGATACCATTCTGGATAAGAGAATGTTACTGCAATCGATATTTTTTCCTGCTTCTCACTTATATAGGTTCATTC CGAGTTTGTTCTGTCTTTCTTTGAGTGCACACATAATATAATATCAAGTTCGTATGATGAAATACCTTATTCTTCTTCAG ATGGACAATTGATGTGGGCTGGACCAGCACCTGGGTCAGAATAGTAAATGAATGGTTGGCAGTCTGTGTTTATTGTAAGT ATTTTGAGTTTGACTAGTGCTTTAAGAGTACTTCTTAACCATTCTCCTTTTAATAGAACCAAGTCTAGCATGAACATCTG AGTTTTAAATTGACATAATAAAACAACTCATGCGTTTTAAACTCATAAAGAGATTTAGTAACTCTTCCTGTATATTTCTT GAACAAATGCAGCACAACTAAATAAAGTTTGAATGTTTTGACAGTATGGATGCTCGTAGCACCAATAATATGGAAGAGCC GACAAACCGATTCTACTTGA
CDS sequence (LotjaGi4g1v0450600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTTGACAACTGCCCGCACTTCTAAACTAAATGAAGTGAGAGATACATGGCACTCTGGATGGTGGTCAGTCAAGAT TGTTCTCTGGGTTGGCATGACTGTCATCCCATTTTTACTCCCTTCAGAATTTATACAGATTTATGGGGAGGTGGCGCATT TTGGTGCCGGGGTTTTCCTCCTAATTCAACTAATAAGCATTATCAGCTTCATTACTTGGCTAAATGATTGCTGTGAGTCA GAAAAATATGCTGCAAAATGCCAAATCCATGTGATGTTATTCGCAACGACTGCATATGTTGTCTGTTTGGTGGGGATCAT TTTGATGTTCATTTGGTATGCACCAAAGCCATCTTGTCTGCTCAATATTTTCTTCATTGCTTGGACACTAGTACTTCTCC AACTTATGACAAGTGTGTCTCTGCACCCAAAAGTGAATGCTGGCATTCTAACTCCAGGGCTTATGGGGCTTTATGTTGTC TTCCTTTGCTGTGAACCTGATGGAGGAAGCTGCATCAGAAAGTCAGACTCTTCCACCAAAACAGACTGGCTAAGCATCAT TAGCTTTATTATTGCAATACTGGCAATTGTTATTGCGACATTTTCAACAGGCATAGACTCCAAGTGCTTCCAGTTCAGGA AGGATGATGATATACCAGCAGAGGATGATGTACCATATGGTTATGGCTTCTTCCATTTTGTTTTTGCCACAGGAGCAATG TACTTTGCTATGCTATTGATTGGATGGAATAGTCATCATTCTATGAGAAAATGGACAATTGATGTGGGCTGGACCAGCAC CTGGGTCAGAATAGTAAATGAATGGTTGGCAGTCTGTGTTTATTTATGGATGCTCGTAGCACCAATAATATGGAAGAGCC GACAAACCGATTCTACTTGA
Protein sequence (LotjaGi4g1v0450600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLTTARTSKLNEVRDTWHSGWWSVKIVLWVGMTVIPFLLPSEFIQIYGEVAHFGAGVFLLIQLISIISFITWLNDCCES EKYAAKCQIHVMLFATTAYVVCLVGIILMFIWYAPKPSCLLNIFFIAWTLVLLQLMTSVSLHPKVNAGILTPGLMGLYVV FLCCEPDGGSCIRKSDSSTKTDWLSIISFIIAILAIVIATFSTGIDSKCFQFRKDDDIPAEDDVPYGYGFFHFVFATGAM YFAMLLIGWNSHHSMRKWTIDVGWTSTWVRIVNEWLAVCVYLWMLVAPIIWKSRQTDST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 299 | 299 | 1.4E-180 | ||
| PANTHER | 1 | 299 | 299 | 1.4E-180 | – | |
| Pfam | 2 | 206 | 205 | 5.1E-33 | ||
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| Phobius | 41 | 51 | 11 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 52 | 71 | 20 | - | – | |
| Phobius | 72 | 90 | 19 | - | – | |
| TMHMM | 89 | 111 | 23 | - | – | |
| Phobius | 91 | 113 | 23 | - | – | |
| Phobius | 114 | 119 | 6 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 120 | 139 | 20 | - | – | |
| Phobius | 140 | 144 | 5 | - | – | |
| Phobius | 145 | 163 | 19 | - | – | |
| TMHMM | 145 | 162 | 18 | - | – | |
| Phobius | 164 | 182 | 19 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 183 | 205 | 23 | - | – | |
| Phobius | 206 | 224 | 19 | - | – | |
| Pfam | 220 | 295 | 76 | 2.7E-20 | ||
| Phobius | 225 | 247 | 23 | - | – | |
| TMHMM | 227 | 249 | 23 | - | – | |
| Phobius | 248 | 267 | 20 | - | – | |
| Phobius | 268 | 291 | 24 | - | – | |
| TMHMM | 269 | 291 | 23 | - | – | |
| Phobius | 292 | 299 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0450600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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