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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0451100 |
Transcript ID | LotjaGi4g1v0451100.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 3-hydroxyisobutyryl-CoA hydrolase-like protein; TAIR: AT4G13360.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Swiss-Prot: sp|Q9T0K7|HIBC6_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial; TrEMBL-Plants: tr|G7L900|G7L900_MEDTR 3-hydroxyisobutyryl-CoA hydrolase-like protein; Found in the gene: LotjaGi4g1v0451100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82321111..82323725) extracted from Lotus japonicus Gifu genome v1.2.
GATCAAATGGAAGATAGTCCAATAATTAGTAGAGGGAGACCAGGGAAAACTGTAAGTCAAACAATTAAGAGAGATTTATT GGTAAACTGTCTATGTTTAAACTTAACACATAGCATTATGGGATTGCATGGCTCTTGTAACGGACTCCACCTTGTTTAAA ATGTCCATGTGTGTTGCTGGTTTCATACTGATTGCTGTCAGAACTATGTTGGATTGTGTGTTTTGCTGCATTTTATATTT TTGCATTAGTTGCTTGTACTGTGTTGAAATAATATATCTATTATGCTGCATATTTTAGGTCTTCACGGCTGAGTATTCTT TGATATGCAAAATTGCTGAGTACAAGAAGCCATATATAAGCTTCATGGATGGAATTACAATGGGTTTTGGAATTGGCTTA TCTGGTCATGGCCGCTATCGTATCATAACAGAGGTAAGCTCAACATGTAATTAGTTGCCTCGTTTTATTATATATATTTA ATGAACTCATAAATAGCCATTCTAGATCTTGTTTATGACTTTCTTTTACTTTAACATATTTCCAGAGAACTGTTCTTGCA ATGCCCGAAAATGGAATTGGCTTGTTCCCAGATGTAGGTTTTGCTTATATCGCGGCTCAAAGTCCAGGAGAAGGATCTGT TGGTATTTTTCTTAATATAACACAGCGTGTGTAGTTTTTATTGCTTTTATTAGACGTGCTGATAAGGATTTAAGGGTTTT TAAAGTACAAACCCTTCATGTTCTTCTTTTTGTGCATTATTCTGTCATAATTTGCCTGATGAATACATGTGTGCTGCACT ACTGAAGCATCTAGATGTGGTCTCAGCTCCTGTTACACAGCTTATTAATTTTCTTAAATATGGTTTGAAGGTTCTTCGAC TTCTTTTCTATGGAATATCTGAATTCCGATATATTGAAATTTTTACTGATTGCAGGTGCTTATCTTGGATTGACTGGAAA GAGGATTTCTACTCCTTCAGATGCAATATATGTTGGCCTTGGAACACATTATGTGACATCTGGAAAGTTAGGTTTATTCA AGGAGGCTCTTTTGGCAACTAACTTGTATGTCAGCTTGAACTTTTTATTCGTTATTGAGACTCTTACTCAAGATATCTCC CTTTAACCTCATCATTTTGATTGAGTTGGACCCCTGAAATGAAAATAATACATTGACTTGTTTGTGTAGACACAAGTCAT TTACTTTCTGCAGCATGCATTTCACTCATGGTCATCTTGGATGTTTGTTGAAATAATCTATCATAGTATTTACTTTGTTA AGAAGTACATAATTGCAATGAGGGCATACATAATTATCTAACAAACTCATTGATTATTCAGTTCCCAGGACCCCCATCAG GACATCAAAGTACTCTTAGCAAGATATGAGTCCAACCCAGAGTCTGAGGCACAATTGAAATTGCTTTTACCCGAGATAAT TTCTTCATTTGGAGGAAATAAATCTGTTACTAAGACTGTTGATGAGCTTAAAAAACACCAGTCAAGTGCTGACTCTAACG GTATACTTATTGATCTATTATTTATTTACATTATTCTGAAATGTCCAGATACAGCTGTTGTTGGCTTGTTTCGTATATCA AATATTTATGCTTGAAATTGTATGTTTGAATTTGTTGTAAATTGCTTGTCTAGTCGTTGTAATTTTCTTGTATTTTTCTA TTTCTAGTTGTGGAGTGGGCTAATGAAGCTCTCCAAGGCCTTGGAAAAGGTGCTCCTTTTTCCCTTTTCTTGACCAATAA GCACTTCTCTGCAGTTGCCTCCGCAGTAGCGAAAAATGACGTTGAATTATCCACAGTAAGCACTTTTTTTGGGGGGATTG GGTGGGTTAAGGTTTCCATGTTTCAAAATTAATTCAATGTCTATTCTCTACATTTGAAATAATCCAGCTTAATGCCGTAA TGAAAACTGAGTATCGGATTGCCTTGAGGTCTTCACTGCGACATGATTTTGCAGAAGGTGTCCGAGCAGTATTGGTTGAC AAGGATCAGGTTTTCTCTTTTTCTCATGATTTTTATACTTTTTATCTGGTAGTCAAACTTCAATTCTAGTTTTCCCTAAA CTAGGAAATGATAGATACAATTGATATGTCTGCAGAAGGCTAGTGTATGTATTACTCTATTACTAATACTAATAGTTAAT ACTATCTGTTTTACCTTGGGGGGGGGGGGACTTATTGTCGGTGAAGTGAAATCATGTGAACATATGTTTCTTCTGTGTTT ATACTTTATACTTATACTTCCTTTCTTCCCTAGCTTCACAAATACTTGAATCTTCCGTTGAAAGTACACGTGTCTGATTT ATCTGCATATGAATCTACAGTTTAAAGTATTTAAATTTGGTTCTGTCTTCATATAGTTCCTTCTGTGTGCTATCTTTCTA GTGCTATGAATCTTTTATATGTTCTCTTTAATCCATGAAGTTATTTATCCTTCAATATTTGGTAAATTTTGTTTCCTGCT TGAGTAATAGATTCAATTACTATTCTCCTGCAGAACCCTAAGTGGAAACCATCAAGATTGGAAGAAGTTGATCCAGGTGA GGTGGAAGAAGTTCTTAAACCACTAGGACCCCAGGTTGGGGAGTTGTCTGTGTAA
CDS sequence (LotjaGi4g1v0451100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATAGTCCAATAATTAGTAGAGGGAGACCAGGGAAAACTGTCTTCACGGCTGAGTATTCTTTGATATGCAAAAT TGCTGAGTACAAGAAGCCATATATAAGCTTCATGGATGGAATTACAATGGGTTTTGGAATTGGCTTATCTGGTCATGGCC GCTATCGTATCATAACAGAGAGAACTGTTCTTGCAATGCCCGAAAATGGAATTGGCTTGTTCCCAGATGTAGGTTTTGCT TATATCGCGGCTCAAAGTCCAGGAGAAGGATCTGTTGGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCTTC AGATGCAATATATGTTGGCCTTGGAACACATTATGTGACATCTGGAAAGTTAGGTTTATTCAAGGAGGCTCTTTTGGCAA CTAACTTTTCCCAGGACCCCCATCAGGACATCAAAGTACTCTTAGCAAGATATGAGTCCAACCCAGAGTCTGAGGCACAA TTGAAATTGCTTTTACCCGAGATAATTTCTTCATTTGGAGGAAATAAATCTGTTACTAAGACTGTTGATGAGCTTAAAAA ACACCAGTCAAGTGCTGACTCTAACGTTGTGGAGTGGGCTAATGAAGCTCTCCAAGGCCTTGGAAAAGGTGCTCCTTTTT CCCTTTTCTTGACCAATAAGCACTTCTCTGCAGTTGCCTCCGCAGTAGCGAAAAATGACGTTGAATTATCCACACTTAAT GCCGTAATGAAAACTGAGTATCGGATTGCCTTGAGGTCTTCACTGCGACATGATTTTGCAGAAGGTGTCCGAGCAGTATT GGTTGACAAGGATCAGAACCCTAAGTGGAAACCATCAAGATTGGAAGAAGTTGATCCAGGTGAGGTGGAAGAAGTTCTTA AACCACTAGGACCCCAGGTTGGGGAGTTGTCTGTGTAA
Protein sequence (LotjaGi4g1v0451100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSPIISRGRPGKTVFTAEYSLICKIAEYKKPYISFMDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFA YIAAQSPGEGSVGAYLGLTGKRISTPSDAIYVGLGTHYVTSGKLGLFKEALLATNFSQDPHQDIKVLLARYESNPESEAQ LKLLLPEIISSFGGNKSVTKTVDELKKHQSSADSNVVEWANEALQGLGKGAPFSLFLTNKHFSAVASAVAKNDVELSTLN AVMKTEYRIALRSSLRHDFAEGVRAVLVDKDQNPKWKPSRLEEVDPGEVEEVLKPLGPQVGELSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 303 | 302 | 5.3E-76 | – | |
PANTHER | 14 | 305 | 292 | 2.7E-164 | – | |
PANTHER | 14 | 305 | 292 | 2.7E-164 | – | |
Pfam | 14 | 292 | 279 | 6.7E-80 | ||
CDD | 16 | 124 | 109 | 9.63477E-19 | – | |
SUPERFAMILY | 16 | 279 | 264 | 8.71E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | 3-hydroxyisobutyryl-CoA hydrolase activity | Catalysis of the reaction: 3-hydroxy-2-methylpropanoyl-CoA + H2O = CoA + 3-hydroxy-2-methylpropanoate. |
Expression pattern of LotjaGi4g1v0451100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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