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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0455100 |
| Transcript ID | LotjaGi4g1v0455100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein PLANT CADMIUM RESISTANCE 2; TAIR: AT1G14870.1 PLANT CADMIUM RESISTANCE 2; Swiss-Prot: sp|Q9LQU4|PCR2_ARATH Protein PLANT CADMIUM RESISTANCE 2; TrEMBL-Plants: tr|I3S7Y4|I3S7Y4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0455100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82680323..82682486) extracted from Lotus japonicus Gifu genome v1.2.
CGCTTGTACAACCTCCATCCTTGACTTGTAGCATTATAATATCAATGACCCATTCCAACCTACAACAATTCTGCATCTTA TAAATTGGGAATCCAAATTCACTCACATGCATTCACCATAAATCAAACTCCTTAGGCCTTATCTTATCTCAAAACAAATT GCTCCAACTTCAACAACTTCATTCCTTCCTTCCAACACCACACAGCATTACATTAACTAGTTCATCATGTATCCAGGCTC AGAGCAAAAGGCAGGGTACAACCAGCCCCCTGCAGCCGCCACCGGTTTTCCGGTGAGCTACAGTGGCACAACAAATTACT CCACCTCCTCAGACTATCAACCTCAACCTCCTCCACCACCTAAACCTCTTGTTGAATGGTCCACCGGCCTTTGTGATTGT TTCTCCAACTGCGGCAACTGTAAGCCCCTCACCCTCACTTTGACAAAGTGTGTGTATGTTTTTCCGTTTACGTACAACTC AAATGTGATTTCACATATCACAACATATAAACAGGAGAAACAAGATTTTATAGTGTTAAGTTCATCAACATGGGATTAGT GTTGAATTCAACTGAAATTCAAATGCACATTAAACCTCCAAATATAACCTACTCCCTCCGGTCCTATTTATAAGCATGAA AGAGAAGAAAAATCTTGGTCCTTTTTATAAGAACCAAATGAAAGTTTGAGCTATATTAATTATTTTTTTCCAATGATGCC CTTATTAATTCTAACTTGTAAAATGTGTCTCATTAATTATTCTCTCTCTTTCTCACTTTCCAACACTAATAACAAAGGGT AATTTTGGAAGTTTATTTTGATTCAAGACAAATTTAATGCATTTTATCTAGTTTAACTGCATTTCTTAAACTATGTGAAT TTTTTTTTGTTGCTTATAAATAGGACAGGAGGGAGTATTAATTATGAGTTATTGTGTGTTAAATTTCAGGTTGCATGACA TGCTGGTGTCCATGTGTTACATTTGGGCGAGTTGCAGAGATTGTTGACAAGGGATCCACTTGTAAGAAGCTAATTAATTC ATTATTAATCATAACTTTTGGATTGGCAAGAAAATTGTTTAATTAATTGTTGAATTTGTTGATTAATTGCAGCTTGTGGT GCTAGTGGGGCTCTGTACACTCTGATCACATGTTTGATTGGATGTGGTTGCTTGTACTCATGCTTCTACAGGAGCAAGAT GAGATCTCAACACCATTTGAAAGGAAATGATTGTTTGGATTGCTTGACTCATTGCTTCTGCGAGTCTTGTTCATTGTGCC AAGAGTATCGTGAGCTTGAAAACCAAGGATTTGACATGAAGATTGGTATGTTATATGATCTTCTTTTTTTCTTATATTAG GACACTTGATGTCTGGAAAATACTCTATATTTCTAGTTTATAGAGAGTGTTTTGCTTTTTTTTTCTGGGTTAATTTAGTT GCTTATTAAATTTGGTTGAACTCAATTGGCGTGATTAATAGGTTGGCATGGAAATGTTGAGCAAAGGACACGAGGAGTAC AAATGGCTTCAACTGCTCCAGCAATGGAACATGGCATGAGCCGTTGAAGTGAGGATCTGAAACACAATAATATTAATATC TCTGAAGAATAAGTGGTTCCTGTTTTGTTTTTTTCCCCCTTCGTTTACCTTTTAAATATTGTTGTCATTTGTGCCTCTAC AAATGCAGCATCAGAATTTGTATCTAGAATTCTCAAAATGTGATGCGAGTTGTACCTTCATTATATATAAAAGTTCTGTT TCTCTTCAATTTTTAAGTGTACATATGTAAATTTTACTTGCTTTCCTTCCTTAAGTAGGGTCAGTGAGATAAGATGCATA ATTTTTCATATGAGCAGTCTATAAAAATCGGTGAGGTCGGAGAAACTGCACAATTTCGTGAGAGAACGCGGTGCAGGCCA ATCCGGCAATCATGGCAACTTCCATGTTTGTAGGGTGGTGGCCATGGATGATAGTCTCTCATCATATGGGGAGAGATTAG TTTCTGGTGGAGGTATAAAGAACACTGATTAAAGCACCAAATTGGTAGCTTCAAGTTATCCCCAGATAAAAGAAAATAAG AGATATCCAATATTCTTCATTAATTCCTCACTTCTTCAAATACCGATTATTTAATAGGGCAAAATCCTGGAAAGGTTGAT AGCT
CDS sequence (LotjaGi4g1v0455100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCCAGGCTCAGAGCAAAAGGCAGGGTACAACCAGCCCCCTGCAGCCGCCACCGGTTTTCCGGTGAGCTACAGTGG CACAACAAATTACTCCACCTCCTCAGACTATCAACCTCAACCTCCTCCACCACCTAAACCTCTTGTTGAATGGTCCACCG GCCTTTGTGATTGTTTCTCCAACTGCGGCAACTGTTGCATGACATGCTGGTGTCCATGTGTTACATTTGGGCGAGTTGCA GAGATTGTTGACAAGGGATCCACTTCTTGTGGTGCTAGTGGGGCTCTGTACACTCTGATCACATGTTTGATTGGATGTGG TTGCTTGTACTCATGCTTCTACAGGAGCAAGATGAGATCTCAACACCATTTGAAAGGAAATGATTGTTTGGATTGCTTGA CTCATTGCTTCTGCGAGTCTTGTTCATTGTGCCAAGAGTATCGTGAGCTTGAAAACCAAGGATTTGACATGAAGATTGGT TGGCATGGAAATGTTGAGCAAAGGACACGAGGAGTACAAATGGCTTCAACTGCTCCAGCAATGGAACATGGCATGAGCCG TTGA
Protein sequence (LotjaGi4g1v0455100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYPGSEQKAGYNQPPAAATGFPVSYSGTTNYSTSSDYQPQPPPPPKPLVEWSTGLCDCFSNCGNCCMTCWCPCVTFGRVA EIVDKGSTSCGASGALYTLITCLIGCGCLYSCFYRSKMRSQHHLKGNDCLDCLTHCFCESCSLCQEYRELENQGFDMKIG WHGNVEQRTRGVQMASTAPAMEHGMSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 93 | 93 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 39 | 186 | 148 | 1.5E-73 | – | |
| PANTHER | 39 | 186 | 148 | 1.5E-73 | ||
| TIGRFAM | 50 | 152 | 103 | 1.0E-32 | ||
| Pfam | 51 | 149 | 99 | 2.5E-28 | ||
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 94 | 113 | 20 | - | – | |
| Phobius | 114 | 187 | 74 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0455100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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