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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0455200 |
| Transcript ID | LotjaGi4g1v0455200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein PLANT CADMIUM RESISTANCE 2; TAIR: AT1G14870.1 PLANT CADMIUM RESISTANCE 2; Swiss-Prot: sp|Q9LQU4|PCR2_ARATH Protein PLANT CADMIUM RESISTANCE 2; TrEMBL-Plants: tr|A0A0B2QJF6|A0A0B2QJF6_GLYSO Protein PLANT CADMIUM RESISTANCE 2; Found in the gene: LotjaGi4g1v0455200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82687466..82689250) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTCTTGTGACATTCCTTTTCCATTTTATTTTATATATGTCCCTCATACTAGATGCTTTTGTCATTGATTAATAATGA AGCAGTCATGAAGCTGCCGCACAAGTCTTTGGTTACATCGTATTTGACATATTATCGTTGAACCACTCCACCTTACGTCG CATTCACGCACGCTTATAAATTCCCATCAAATTCACAACCCCTTAGCTACCAAACCTTTCTTTAACTTCTGCTACATTTC AGTCATGCAACCACCACCGTACGATCACCCCGCCGCCACTGGTTACCCGGTGAGCTATGGCAGCTACAACAACCCGGTTC CCCCGCCTCAGACAGCTGCACCGCCATCTCACCACCGGAAAGCTCAGGAAGATTGGTCCACAGGCCTCTGTGACTGCTCC TCCGACGTCAAAACCTGTTAGCACCAAACCATCATCAATGTGAATTAACGATTAATTGTTCATACACATAGTCATACGGC TAAATTAATCTGTTTAATTTTCTATTTTTCAGGTTGCATAACGTGTTGGTGTCCATGTGTCACGTTTGGCCGAGTTGCAG AGGTTGTTGATCAAGGATCAACTTGTAAGAAACCAAACTCTTCATTTTCATTTTAGATTCATTTGTTATGAATGCATGAT TCGCGATTCACTGAGATTCAGTCTTTGTCGATTCGTTAAACTGAATGTATAATTTGGTGTGACTAATTAATTATTGTTTG ATTTGTGATTTGCAAATAAATTAATAGCATGTGGTGCAAGTGGTGCTTTGTACACACTGATTATGTGTGTGCTTGGTTGC GGTTGCTTGTACTCATGCTTCTACCGTTCCAAGTTGAGACGCCAATACATGTTGAAGGAGAGTCCTTGTTCTGATTGCTT GGTTCATTGCTGCTGCGAGTCATGCGCCTTGTGCCAAGAGTATCGTGAGCTTGAAAATCGTGGATTTGACATGACCTTAG GTATGATTAATTATGAACCATTAATTGTTAGTTATCCTCTCTATGTGCTGAACCTGAGTTTTTTATTTGGTCTTGATTGA TGTGTTTAATTTTAAAATTGATCTCTTAACTATCATTTGTTTTTTAATTTGGTTTTACTTTAACATTATCTCCGATACAG GTCATGGCCAATGAGTTTCAATTATCTAATGACTACTATAATACTAATCTTTGAAATTTCAAATGAAGGGAAAGGGAAGG GAATCCAAATAGCATTAGTCAATAAGGATAAACTTTAGGATTTTTATTTTTAATATAGTTGATGAATTCTGTTAACTGAT AAGTTAGCTACTTAGTTGCTATGATCTTGCTGTTAATTTGTTAGAGATTAGTTTGTTTGTAGGCTCTGTGTCTTTTTTGT TGACTGGTTTTGTTTGAAATGGTTAGGGTGGCACGGAAATGTTGAGCGCAACCGGGGAGTAGCCATGATTCCATTTCCAT CAGCTCCAGGAGTTGAACACATGAATCGTTGATCATCAATGAAGAATGGATATATAGTTACAGTTTATTGATTTTTTTCA GTTGTTGTAATTCATGTTACATCTTCAATGAATAGATACAGATACAGTGTTACAATGTTGGCAGAATTTTCCAGTACTGT GATGTGGGTGTTACTGATACATATTTTTATTTTTGGTACTCATATGACAATCATTATCATGATCTGAAATAAATGTGTTG GGCCTATTTTGTTTTCTCTGCATTATTTATCTGATCTTCTCAATTGGACAAACTGTACTTTTTCTGAGTTTGCTTGATTC AAAATGATCAAACACAAAGTAAAAT
CDS sequence (LotjaGi4g1v0455200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACCACCACCGTACGATCACCCCGCCGCCACTGGTTACCCGGTGAGCTATGGCAGCTACAACAACCCGGTTCCCCC GCCTCAGACAGCTGCACCGCCATCTCACCACCGGAAAGCTCAGGAAGATTGGTCCACAGGCCTCTGTGACTGCTCCTCCG ACGTCAAAACCTGTTGCATAACGTGTTGGTGTCCATGTGTCACGTTTGGCCGAGTTGCAGAGGTTGTTGATCAAGGATCA ACTTCATGTGGTGCAAGTGGTGCTTTGTACACACTGATTATGTGTGTGCTTGGTTGCGGTTGCTTGTACTCATGCTTCTA CCGTTCCAAGTTGAGACGCCAATACATGTTGAAGGAGAGTCCTTGTTCTGATTGCTTGGTTCATTGCTGCTGCGAGTCAT GCGCCTTGTGCCAAGAGTATCGTGAGCTTGAAAATCGTGGATTTGACATGACCTTAGGGTGGCACGGAAATGTTGAGCGC AACCGGGGAGTAGCCATGATTCCATTTCCATCAGCTCCAGGAGTTGAACACATGAATCGTTGA
Protein sequence (LotjaGi4g1v0455200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQPPPYDHPAATGYPVSYGSYNNPVPPPQTAAPPSHHRKAQEDWSTGLCDCSSDVKTCCITCWCPCVTFGRVAEVVDQGS TSCGASGALYTLIMCVLGCGCLYSCFYRSKLRRQYMLKESPCSDCLVHCCCESCALCQEYRELENRGFDMTLGWHGNVER NRGVAMIPFPSAPGVEHMNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 86 | 86 | - | – | |
| PANTHER | 32 | 169 | 138 | 2.9E-76 | – | |
| PANTHER | 32 | 169 | 138 | 2.9E-76 | ||
| TIGRFAM | 43 | 145 | 103 | 1.6E-33 | ||
| Pfam | 44 | 142 | 99 | 1.1E-28 | ||
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 87 | 106 | 20 | - | – | |
| Phobius | 107 | 180 | 74 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0455200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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