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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0455300 |
| Transcript ID | LotjaGi4g1v0455300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 3; TAIR: AT2G01630.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3; TrEMBL-Plants: tr|A0A0R0K0I4|A0A0R0K0I4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0455300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82703041..82705334) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCACTTTGATTCTACCTTGCTAAAAAATGGAAGTTATTCATTTGTAGGCACTTCTTATTTTTTTCTACAGATGCTT TCATTGGTGTCAACATTGGTTCAGATGTATCTAACATGCCAAGTCCAACAGAGATTGTGACCCTTCTTAAAGCTCAAAGC ATCCAACATGTCAGACTCTATGACGCCGACCGAGCCTTGCTTATTGCTCTCGCTAACACTGGAATACGCGTAACTGTTTC TGTTCCCAACGACCAGCTTCTCGGCATTGGTCAGTCCAATGACACTGCCGCAAATTGGGTTTCTCGAAACGTCATAGCTC ATGTTCCTGCTACCAACATTACTACCATAGCTGTCGGATCTGAGGTTCTAACTATCATCCCAAATGCAGCCCCCATTCTA GTCTCTGCCATGAATTTCATTCATTCTGCTCTTGTGGCTGCAAAGTTGGATAGCCAAATTAAAGTCTCGACTCCACACCC TTCTTCTATCATCCTTGACTCGTTCCCACCTTCGCAAGCATTTTTCAACCGAACTTGGAATCCGGTCATGGTTCCTTTGC TTAAATTTCTTCAAACAACAGGTTCATGTCTTATGCTCAATGTATACCCGTATTACGATTACCAGCTATCCAACGATGCA ATCCCGCTCGATTATGCTTTATTCCGCCCCCTACCGCCCAATAAGGAAGCTGTTGATGCCAACACTCTCCTGCATTACAC TAATGTTTTTGATGCAATTGTTGATGCTGCTTATTTTGCAATGTCTGACTTGAACTTCACCAATATCCCTGTTCTGGTCA CTGAATCAGGATGGCCCTCAAAAGGCGACTCATCTGAGCCGGATGCAACCATTGATAATGCTAACACTTACAACAGTAAC TTGATCAGACATGTTCTTAACAATACAGGAACTCCGAAACACCCGGGAATTGCAGTTAGTACATACATTTATGAGCTTTA CAATGAAGACTTGAGATCAGGTCCAGTCTCAGAAAAGAACTGGGGGCTATTTTTTGCTAATGGAGGACCAGTGTATACCT TACACTTAACTGGTGTTGGTACTATATTTGCAAATGATACGACAAACCAAACATTTTGTATCTCAAAGCGTAATGCAGAT CCTAAGATGCTGCAGGCAGCACTTGATTGGGCTTGTGGACCAGGGAAGGTTGATTGTTCCCCTTTGCTGCAGGGTCAACC ATGTCATGAACCAGATAATGTAGTTGCGCATGCTACATACGCTTTCAATGCTTATTATCAGAAGATGGCTAAGTCTCCTG GGACCTGCGATTTCAAAGGGGTTGCCGCTATCACTTCCACAGACCCAAGTATGGCTTGCACACTCATACACAAATATATA TATTTGATTTGGCTGCAAAAGTATGTGTACATTTATTTGTAAAGCCGGTAGAACTCTATGACTAGAGGCAATAAGGAAAT ATGCATGGTTTCACCTTAGTACTAAACTAGGTTTTGATAAACTTACAAGTAAGGTGAATTACAATGAAATCAGTTTTAGT CATTTACTTCTCTAGTTCTATATATCTTCAATAGCACAATTTTGGTCTCTTCAATTTTAAACTTCTTTCAGATGTGGTTC TTGCTTATCAGTTTGTTTCAAGACTATTTGCTCATATAATGGATGTGAGCATGTGGCTATTTTTGTGTTTGATTCTCATT AGTTATATTTCAAAAAACTTGTGACATGAGCACTTTTTGAATTCCACTTGCTTAGTATCACTTTCACAAAAAGAGTGGTA ATCTTAGTCATTGCCAGGTGCTTATTAGTTGATTTGAAAAATTCACTTTTTTCCTACTTATTGGACCTTTTCTGTACACT AACATTTGCTATACTACTTCAAAGAGACTTGCATTGTCAAATTTCTATTTAAAGTTGCGTAGCATTTTAATATAACTGAT ATTTGTTATCTAATAATCGTTTCAGGTCATGGTTCTTGTATATTTCCAGGAAGGTATGATCTCTCGAGCTTATGTCGGTG TGCTTGTTGTCATTTCCTTCTCAATTATGTGTGAAACTTTTCTTGTTCTCATTCCAAAAAGCTGTGAAATAAATTTAAAG CTAAAGTGTTTTGTAATTTCTGTCTAATACTCTTTTTTGCATATTTCTGTTGAACTACAGTCATGGTAAAAATGGCACCA GCATAAATGGCACTTCACTTGCCCCATCTAATTCTACAAGTTCAGGCTGTTTATCGCAATACTACTACAGTAGGGGATCT TTCACAAGCTCTGTGATTCTAGTTGTTTTACTTTTCAGTGCAGCTGTCATATAA
CDS sequence (LotjaGi4g1v0455300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAAGTCCAACAGAGATTGTGACCCTTCTTAAAGCTCAAAGCATCCAACATGTCAGACTCTATGACGCCGACCGAGC CTTGCTTATTGCTCTCGCTAACACTGGAATACGCGTAACTGTTTCTGTTCCCAACGACCAGCTTCTCGGCATTGGTCAGT CCAATGACACTGCCGCAAATTGGGTTTCTCGAAACGTCATAGCTCATGTTCCTGCTACCAACATTACTACCATAGCTGTC GGATCTGAGGTTCTAACTATCATCCCAAATGCAGCCCCCATTCTAGTCTCTGCCATGAATTTCATTCATTCTGCTCTTGT GGCTGCAAAGTTGGATAGCCAAATTAAAGTCTCGACTCCACACCCTTCTTCTATCATCCTTGACTCGTTCCCACCTTCGC AAGCATTTTTCAACCGAACTTGGAATCCGGTCATGGTTCCTTTGCTTAAATTTCTTCAAACAACAGGTTCATGTCTTATG CTCAATGTATACCCGTATTACGATTACCAGCTATCCAACGATGCAATCCCGCTCGATTATGCTTTATTCCGCCCCCTACC GCCCAATAAGGAAGCTGTTGATGCCAACACTCTCCTGCATTACACTAATGTTTTTGATGCAATTGTTGATGCTGCTTATT TTGCAATGTCTGACTTGAACTTCACCAATATCCCTGTTCTGGTCACTGAATCAGGATGGCCCTCAAAAGGCGACTCATCT GAGCCGGATGCAACCATTGATAATGCTAACACTTACAACAGTAACTTGATCAGACATGTTCTTAACAATACAGGAACTCC GAAACACCCGGGAATTGCAGTTAGTACATACATTTATGAGCTTTACAATGAAGACTTGAGATCAGGTCCAGTCTCAGAAA AGAACTGGGGGCTATTTTTTGCTAATGGAGGACCAGTGTATACCTTACACTTAACTGGTGTTGGTACTATATTTGCAAAT GATACGACAAACCAAACATTTTGTATCTCAAAGCGTAATGCAGATCCTAAGATGCTGCAGGCAGCACTTGATTGGGCTTG TGGACCAGGGAAGGTTGATTGTTCCCCTTTGCTGCAGGGTCAACCATGTCATGAACCAGATAATGTAGTTGCGCATGCTA CATACGCTTTCAATGCTTATTATCAGAAGATGGCTAAGTCTCCTGGGACCTGCGATTTCAAAGGGGTTGCCGCTATCACT TCCACAGACCCAAGTCATGGTTCTTGTATATTTCCAGGAAGTCATGGTAAAAATGGCACCAGCATAAATGGCACTTCACT TGCCCCATCTAATTCTACAAGTTCAGGCTGTTTATCGCAATACTACTACAGTAGGGGATCTTTCACAAGCTCTGTGATTC TAGTTGTTTTACTTTTCAGTGCAGCTGTCATATAA
Protein sequence (LotjaGi4g1v0455300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSPTEIVTLLKAQSIQHVRLYDADRALLIALANTGIRVTVSVPNDQLLGIGQSNDTAANWVSRNVIAHVPATNITTIAV GSEVLTIIPNAAPILVSAMNFIHSALVAAKLDSQIKVSTPHPSSIILDSFPPSQAFFNRTWNPVMVPLLKFLQTTGSCLM LNVYPYYDYQLSNDAIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFAMSDLNFTNIPVLVTESGWPSKGDSS EPDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRSGPVSEKNWGLFFANGGPVYTLHLTGVGTIFAN DTTNQTFCISKRNADPKMLQAALDWACGPGKVDCSPLLQGQPCHEPDNVVAHATYAFNAYYQKMAKSPGTCDFKGVAAIT STDPSHGSCIFPGSHGKNGTSINGTSLAPSNSTSSGCLSQYYYSRGSFTSSVILVVLLFSAAVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 441 | 441 | - | – | |
| Gene3D | 1 | 311 | 311 | 8.4E-113 | – | |
| PANTHER | 1 | 426 | 426 | 3.0E-256 | – | |
| PANTHER | 1 | 426 | 426 | 3.0E-256 | – | |
| Pfam | 2 | 310 | 309 | 2.1E-74 | ||
| SUPERFAMILY | 2 | 310 | 309 | 4.22E-79 | ||
| ProSitePatterns | 224 | 237 | 14 | - | ||
| SMART | 326 | 411 | 86 | 1.2E-47 | ||
| Pfam | 327 | 397 | 71 | 1.5E-17 | ||
| Phobius | 442 | 463 | 22 | - | – | |
| Phobius | 464 | 464 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0455300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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