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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0455400 |
| Transcript ID | LotjaGi4g1v0455400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynein light chain; TAIR: AT1G23220.1 Dynein light chain type 1 family protein; Swiss-Prot: sp|Q86A88|DYL_DICDI Dynein light chain, cytoplasmic; TrEMBL-Plants: tr|C6SVJ0|C6SVJ0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0455400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82697700..82699556) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGTGCAGAGGAGGAGCTAGAGAGAAGAAGCAGGTTTCTGAAAAGCTTGATACAGAAGAAGAAAGTCTCAGAGAA ACAAGAGCAGCATGACCACATCCAAAACAACAATGTTCGGGTCAGGGCTTGTGACATGCCTCTCCTTTTGCAGAACCGTG CCTTTTGTTGCGCTCGTGATCTTCTGGATTCTATGCCAGCAAATAAGCTTGACACCAAACGCCTGGCCCTGACCCTTAAG AAGGTAAGGATAGCTTTTCTTATTTGTGTTTATTTTATTTTTGTTTGAGGATCTTTCATTTTTACCAATGTATTTCTGGG TTCTGATATTTGACCACATAGGATGAGGTCACTTGAAATGCTACTTTGGAAACTTTTGTTCAAATATGGCATACAGTTAC TTAACCAATCAAGTGATTATTCTTCCTCAATTTGCTCTGTTTTGCTAATTCATCAAACAGTCTAGCTGGCACAATCAATG GTTTCAGGATCACAAGTTTTTATATATATGCTGATTTTTTTTTTGGCGTGTTGATAGTTTGTCAGTTGAGTGAGCATCTA AGGAATATGTCTAATTGCTTCCTAAGTTCCTAGTTATTCTCTGGGAGATAGAACTAATTAAGCTTTTTGAAATTGATCTG TTTTCTTATCTTTGATTTTGATCTTTCTTGGTGGATTATAGTACTTCCACTGCTGCTAGTACATGTTTTGCAAGGACATG GTTTAATTGGTAGTTTTTATTTGGTTAGCTGAAAAATTTCTGTTAATGTTCTTATGATGTCTAGTAATGCAGCTTTCATA TTTTAGCTCTTATATGCAAAACATTTTCACAGTGGTTTGATACTTTGATTTAGCTTCTGGGAACTAATTTAAGTAGAAGT GCATTGGCTTTTATGCCAAGTTCACTACTTCCAAAAGTTTCAATTCTTGTCTGTTGACCACCCGAATCTCAAGAAGTCTC TCACACCCTTCTTTTCTTGAGCCCCCCTATAATATAGAATCTGCTTATAATATAAAATTATGTACAAACAGAGCTTGAAC TAGAAGTAGAGGATTGAAAATACATGTTTTGTTTTGTTGGTTTTACTTTAAGTACATAGATTTAGGAGTTGCCATATGAG ACTTCATCAATTTTATATTCTATTTTATTGTATACATAAAACTTCAAGTTTCAATTAGATGATGGATATGGCTAAATATC CATCAGCATGGTGTCCCTAAGGCCCACTTAATATTGCATCAATTTTTTTCTCCTTGTGAACTATGAAAAATGTCAAGCAA GTGCATTCTAGATTGCATATCTGTGCTTCTGCATGTAACTCGGAGTTTGGCAAAACCAGAGAAGTATGGTTATGAGTTGG TTGGATGTGGTTATTAATGAATTTAGGTGGCTTGGTACAATCTATTTATGATATAAAAAGTGTTAGCTGGTCCCTCATTT CATTGAAGCATGGCATATGATATTGAAGTTGTAAATCTAGAATATTTCCTAATAATGTGATACCCCAAGTAACAAAGTGG TATTTTTCCTTGGTATATTTTTATCTTTTGTTTCTTTACCACACTAACAATATTAAACCTAGATATCACCAAGCATGTAC TATTTTAAGGAGAGGTCTCGAGTTCAAATTCATATACAACAACGTCTGGTTTTAACTACTTGAATGACTCATGACAGAGA GACATCCATGTTTTACAGGAATTTGATTCATCCTATGGTCCAGCTTGGCACTGCATTGTGGGATCTAGCTTTGGCTCATA TGTGACTCATTCTCTTGGTGGATTCTTGTATTTTTCCATTGACAAGGTCTACATCCTTCTCTTCAAGACAGCTGTTGAAC CATTAGACCATCCATAA
CDS sequence (LotjaGi4g1v0455400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGTGCAGAGGAGGAGCTAGAGAGAAGAAGCAGGTTTCTGAAAAGCTTGATACAGAAGAAGAAAGTCTCAGAGAA ACAAGAGCAGCATGACCACATCCAAAACAACAATGTTCGGGTCAGGGCTTGTGACATGCCTCTCCTTTTGCAGAACCGTG CCTTTTGTTGCGCTCGTGATCTTCTGGATTCTATGCCAGCAAATAAGCTTGACACCAAACGCCTGGCCCTGACCCTTAAG AAGGAATTTGATTCATCCTATGGTCCAGCTTGGCACTGCATTGTGGGATCTAGCTTTGGCTCATATGTGACTCATTCTCT TGGTGGATTCTTGTATTTTTCCATTGACAAGGTCTACATCCTTCTCTTCAAGACAGCTGTTGAACCATTAGACCATCCAT AA
Protein sequence (LotjaGi4g1v0455400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGAEEELERRSRFLKSLIQKKKVSEKQEQHDHIQNNNVRVRACDMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLK KEFDSSYGPAWHCIVGSSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLDHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 132 | 132 | 2.9E-69 | – | |
| PANTHER | 1 | 132 | 132 | 2.9E-69 | ||
| SMART | 34 | 125 | 92 | 2.5E-38 | ||
| Gene3D | 34 | 126 | 93 | 2.2E-30 | ||
| SUPERFAMILY | 36 | 125 | 90 | 3.79E-28 | ||
| Pfam | 39 | 125 | 87 | 5.0E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
| Cellular component | Dynein complex | Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. |
Expression pattern of LotjaGi4g1v0455400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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