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LotjaGi4g1v0460100.1

Overview

Field Value
Gene ID LotjaGi4g1v0460100
Transcript ID LotjaGi4g1v0460100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger family protein; TAIR: AT1G30970.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|Q9C5G0|SUF4_ARATH Protein SUPPRESSOR OF FRI 4; TrEMBL-Plants: tr|G7LCD2|G7LCD2_MEDTR C2H2-type zinc finger protein; Found in the gene: LotjaGi4g1v0460100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:83088789..83094085) extracted from Lotus japonicus Gifu genome v1.2.

AAATTTCACTTGTTCAATTCAATTCGCTATTGGAACCCTAGCTTCTCCTCCTCCTTCTCCTTCTGCTCCATTGCAGGGTG CCAGAGTCCTCACGCCCCGAACTCTAGCTACCAGAAACTCAATTCGTGAGGGATCGGAATCGCGATGGGGAAGAAGAAGA AGAGGGTTTCCTCCAAGGTCTGGTGTTATTACTGTGATCGCGAATTCGACGACGAGAAAATCCTGGTGCAGCATCAGAAA GCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCTGGTGGCATGTCCATCCATGTCCTCCAAGTTCA CAAGGAATCCGTCACCAAGTATTGCCCTTCATTCTCCTTATCTAGGGTTTCTCTATTTTCATGTGATTTGTGTCTAAGAG TTGGCCTCATGTTATTCTCCATGTTTATTTAGGAGTATGGATATATAGATAATTAATCACATCCTAAAGGAGATTCTGCA AATTCAGTGTGTTTTGATTTTCATTGACTTCAATGTGGCAACATATAGCTTCTCTGTTTGTGCATTGGCATCTGTGTTTT CCCTTCCGCGTTCAGGAGAAAGGGAAATCAAACATACAATTAGTGAATGCTTTAGTGGCTGGTTACTTTTGACTTTAGAG GAATGATATGGTTTCTCTTGATTACTTATGATCCATGCTCGAATGAATTTCTAATGACGACGAAGCTTGTATGTTATGTG TTTCATGTAATTCCTGTCTAAGAGTTGGCCTCATGTTGTTGATGTTAAATTGTTTTGTGATGTTTTCTTAAGTTGTTTTC GTTCTGTCAATTTTTATTGAGATTTCTTTTTTTTTATCTTTAGGGTGCCCAATGCGAAGCCTGGCAGAGAGAGTACAGAT ATTGAGATATATGGGATGCAAGGGATTCCACCAGATGAGTTGGCTGCTCATTATGGAGAGGAAGGTCATACCTTGTTTTC TGCAACCTTCTGTTCTTGGTTTTAAAATTTTAATGACACAAGTGTCTTTGTTGGAATTAAGATAAAAGCTTCTTACAAAT ATTGTTAGTAATGATAAAGATGTTGAACCAGACATGAAATGTTTAATCTTCTTATGATTTCTTGGTTAATGCAGAGGATG ATGTTCCATCAAAGGCAGCCAAGGTGGATGTCCCATCAGCCCAGCTTGTAGGTGGAATGGTGCCGCCTCCTTTGGGTCCA GGATATCCTCCTCGATCAACCTTGGGCCCAATGCCACCAATGTATGTTTGTTAAAATTGTTGTTCATTTTAATTCTCCTA TTATTCATGTTCTACATAGCATATAGTGCAAGTGATAAACTGTTGAATATTTTATTTATTAAACAATATATGAGTGGCAC AAAATCGTCTCATTTACATACGTGATATTTTTTGCTGCAGGTATAATCACGCTGTGCCTCCTAGTGCATGGCCTGTTCCA CCTCGACCTCAGCCATGGTTTCCACAACCTCCAGCTGTTTCCATGCCTCCTCCTGTTCCTTATCCACAACAGCCATTATT TCCTGTGCAGAATATGAGGCCACCACTGCCATCAACTACTTCTCTAGTTCAAACTCAGATTACTCCTCCTGGATTGCCTA CATCTACACCTTCTGTCCCAGTTTCACAACCATTATTTCCTGTTGTTGGAAATAACCACACATCAAGTCAAAGTTCAACA TTTTCTGCTGCACCTATTTCTCCAGGTGTTGCATCAATAACCCCAGTGCTGTCTTCAAATGTCCCTGTTGATGCACATTT GGGTGTCAACTCTTCTGTGACAAGTAGTTATCAGGCAATAGGGATTCCAGGTAACCTCTTTTTTTCTGTCCTTGAATACT TTTGGCTGGTTTTATGATCCAACTGCAAGAGTGTGTTTGATAAAATTGAGCAATTTTCTATCTTTAGGTTGACTTCGTAT GATTATAGTGATTTCACTTCCTTCTCCCTCTGGTTTTTATAGGTGGGCCAGCAAGTAACTCACATTCTTATGCTTCTGGT CCAAATACCGGTGGTCCTTCAATTGGCCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCCGCCACTAATGA AGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGTCAGTTGTATTCTTGAGGAACTCTGTTGTGTTCCATTTGACT ATTACTATTTATTGATTGGTAATGGTATGATGTTTGGTTGCTGTAGGAGGAAAGAAGAATGTCTTTACCAAAATATCAGG TGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGCAATACATGGAGTTGCTTTCACATCTAACCAGATGAGTAGG TTTTATGCTTCCTATTTACAGATTCAGTTGTTTACGCATTGTTACCTATTTAAAGAGGTATTTCTGTGTAAATTTCTAGC CCTGTTTTGAGAAAATAAATGTCGAAGAAAATATGATCCTTTTAATCCTACCTCTTGCTTCATAACCTAAGGGGTAATTC ATTTTGTTTTATTTTAAATGGTCACTATCGCTAAAAGCTATGCCTCCATTTTTGCGGGCCTCCAAAGGTTCAAGTAGGTA TTCTATTAATTTCTTTGGTAGTTAATTATAGTCACTATAACATAATCTGTGAAGCTTGCTGCAAACAACCAACTTCGTGA TCCTTCATCCCAGCATTTGTACATCGTTAAGAGTATGTATGTATATTTTTGTTGGGTTTGGTTTGCCAATGTTATTCTTT CTCCCCCTGCTTGATTCCAAAAGTTTGGGGTTTACCCAACTGGTTTTTGCCCACTCGTAGCATCATTACATTTATTTTAT GGAACAAGTGAATTCAGACTTGGCCCAGGTCAGCTTCTTTCGCAGAGTTTGGATCTCTTGCATAGGACCAGGCTCTAAAA TATTTGGTTTGTTGTAATTTGTGGTCTATGATTACTTGCTGATCACTATTTTCATGTTTGTCTTTCAGATGAGCTCCATA GATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTGGCCGGTCGTATGGCATTTTAGATCAATCTCATCCATACACA CCTGTCAAATGTCTTCAGTCAAATGTCTTCAGTGATATGGTCTCAGAACGGCGTTTTAATTATCTGCTGACAACATGTGT TCAACATTCCTTTATTTAAGGCAAGTAACCTTGTTATTGTGCCATTCTTTGCCAAAATGGACAGTGGGCTCGGCCCTCAT ATTGAAATCAAGGAAAGAAGGTTGCAATGGGGTTTTGAAATGCTTATCTGGTAATATTTGCTCTAAGGATGTTGCAGAGC TTTGTTTCTTTCTTTTTCCCGTACCTTTTCTCCCTTTGATGTTTTTAGTCAATCTTTTAGGACATGGTACTTCATTACCA TTTGGTGTAATCTACATGTCTTGTGTCTTTGGGAAACAAAATTGACTGCATTTCTTTGTTCTTCGTCATTTGTATTGTTT TACCTTATCGCGAGTGTAAAAGAAAGTCATGAAAGAGGAAAATTACAAACCTTTGCAGACAATAAAACTTATTTGAATAC AACTTTTATATATTCATACTCACTTTCTATTTGAGCCATATACTCACTTTCTATTTCATCCAGTTTCCAGCTTACCCTCT TTTCATCTCTTAATTCTTTTCCTGGGTTCGTTTGGGGACTCACTTTGAGAGGGTAAAGTAAGTATCACAATCATTGATTG AGTTATTTAACTACTAATGGTTATGATGCTTGTTTTACTCTGTTAATCTAGTCTATTCACTTTAGAAGAGTCAAATTCTC GTTTGCTATCACATCATTCATAATAACTATCACTTCTCACTTTCTATTTCATTCATTTTCCAGCTTACTCTCTTTTCATC TCATAATTCTTTTCCTGGGTTTGGGGACTCACTTTGAGAGGGTAAAGTAAGTATCACAATCATTGATTGAGTTATTTAAC TACTAATGATTATAATTCTTATTTTACTATGTTAATCAAGTCTACTCACTTTAGAAGAATCAAATTCTCTTCTGCTATCA CATCATTCAAAATAACTATCACTTCTATCTATGTCTTTCTTTAGGGGTGGAGATGGTATGAGTGTGAATAATTATTTTTT TCTGTTCAAATTGGATACTACTTGGTGTTTTCGCCATCCTTTGGTTCATGTTGATGTGTTGCAATGGTTATAGATCTGAG AAAGCCTATTTGTGATGAGATTTTGGGTGGGGTAGGATTTGGGGATTGTAGGTTTTAAATTGCTGATCACAAAGTATATT AGATGACTTCCTCTTAGCACCCTACAAAGTGATCTTACCCACTTCTTATGAATTAAAACCTTTTTTTTCCATCTTGACTC CACTGGTTCAGAGTGAAGGTCTACTTTAGTGATTAGCCCCCCAAAAAAAGATTGGAGTATGCGATTTCTCAAATGGGTCA CATCTTAGGGTGCGGCTTTCCATTAACAAAATGAATAAATAAAATAGAGATCATCGTAGATAAGACAAATAAAACTGAAA GTCAAAGTTGACACTTTGAAGTCTTCCAAAAGCCAGTGGATATAACAAGGGCCCTCTAAAAATAATTAAATAAATAAACA AAACTATATATTAGCCAACATAATTGTAATTGCAAAATGAGTGTGAAAACCAATTCAGAAATGAGTGTAATTGCAAAATG AGTGTTGAGTCTAAAATAGTTGACATCAAGATTGTGTCAAGAAGGAGAAATCAAGGGCAATACAAAAAAATAATTGGAAA ATGTCATCTCACAAGAAGTTAAGAACGGGAACGGGGATTCAACACAAGGATAAAGAGGGAACACGAAGAAAGAGCAAACC AATTCAGAAAGGACACCCCATTTTTCTGATAACTTAACCAAACTAGAGTACTAAATAATGGACAAGGCTTTCTAGGGATG TAGAACAAGATACAGCTGTGTAGAAGTTGACCCACTACTCTAAGAATTCCAAAATTAGATTGTGTTTCTTTGCCGCATGG AATTTTAGCTGCACCAAAGTGTCTGTCTAAATTTACTCCAAGAGCTAAACAACCACATGCTAAATTGAAATTTAAGTAAA AAAATGAATGTAATTTATAAAAAACTTATTTTGATTACATTACTTTACCTAAGATTATGCTATTAAAAATTGGGTTAAGT TATGCAGAAAAAAATTGGTTTAAGTTATACAAACCCATTTGTAAACTGCTGATGAGAATAACTGCAGGTTAGAATGGATG TTTGAATATACAATGAAAATCTTGTTGAAGTTAAAATTGCGGTAGATAAACACAAAAGTTAATGGAAATTGCTTATATTC ACTACAATTTTAGTTCA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0460100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAGGTCTGGTGTTATTACTGTGATCGCGAATTCGACGACGAGAAAATCCT GGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCTGGTGGCATGTCCATCC ATGTCCTCCAAGTTCACAAGGAATCCGTCACCAAGGTGCCCAATGCGAAGCCTGGCAGAGAGAGTACAGATATTGAGATA TATGGGATGCAAGGGATTCCACCAGATGAGTTGGCTGCTCATTATGGAGAGGAAGAGGATGATGTTCCATCAAAGGCAGC CAAGGTGGATGTCCCATCAGCCCAGCTTGTAGGTGGAATGGTGCCGCCTCCTTTGGGTCCAGGATATCCTCCTCGATCAA CCTTGGGCCCAATGCCACCAATGTATAATCACGCTGTGCCTCCTAGTGCATGGCCTGTTCCACCTCGACCTCAGCCATGG TTTCCACAACCTCCAGCTGTTTCCATGCCTCCTCCTGTTCCTTATCCACAACAGCCATTATTTCCTGTGCAGAATATGAG GCCACCACTGCCATCAACTACTTCTCTAGTTCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTACACCTTCTGTCC CAGTTTCACAACCATTATTTCCTGTTGTTGGAAATAACCACACATCAAGTCAAAGTTCAACATTTTCTGCTGCACCTATT TCTCCAGGTGTTGCATCAATAACCCCAGTGCTGTCTTCAAATGTCCCTGTTGATGCACATTTGGGTGTCAACTCTTCTGT GACAAGTAGTTATCAGGCAATAGGGATTCCAGGTGGGCCAGCAAGTAACTCACATTCTTATGCTTCTGGTCCAAATACCG GTGGTCCTTCAATTGGCCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCCGCCACTAATGAAGTCTACTTA GTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTACCAAAATATCAGGTGCATGATGAAAGTAGCCA GGTAAGTCATACTACCTCTGCAATACATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGTTTTATGCTTCCTATTTAC AGATTCAGTTGTTTACGCATTGTTACCTATTTAAAGAGGTATTTCTGTGTAAATTTCTAGCCCTGTTTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0460100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKESVTKVPNAKPGRESTDIEI YGMQGIPPDELAAHYGEEEDDVPSKAAKVDVPSAQLVGGMVPPPLGPGYPPRSTLGPMPPMYNHAVPPSAWPVPPRPQPW FPQPPAVSMPPPVPYPQQPLFPVQNMRPPLPSTTSLVQTQITPPGLPTSTPSVPVSQPLFPVVGNNHTSSQSSTFSAAPI SPGVASITPVLSSNVPVDAHLGVNSSVTSSYQAIGIPGGPASNSHSYASGPNTGGPSIGPPPVIANKAPAPQPATNEVYL VWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSAIHGVAFTSNQMSRFYASYLQIQLFTHCYLFKEVFLCKFLALF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23215
1 353 353 6.6E-129 –
Gene3D
G3DSA:3.30.160.60
2 62 61 3.3E-5 –
ProSiteProfiles
PS50808
7 66 60 11.833
IPR003656
SMART
SM00355
12 35 24 20.0
IPR013087
ProSitePatterns
PS00028
14 35 22 -
IPR013087
SMART
SM00355
36 59 24 0.1
IPR013087
ProSitePatterns
PS00028
38 59 22 -
IPR013087
MobiDBLite
mobidb-lite
282 310 29 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0460100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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