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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0460100 |
Transcript ID | LotjaGi4g1v0460100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger family protein; TAIR: AT1G30970.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|Q9C5G0|SUF4_ARATH Protein SUPPRESSOR OF FRI 4; TrEMBL-Plants: tr|G7LCD1|G7LCD1_MEDTR C2H2-type zinc finger protein; Found in the gene: LotjaGi4g1v0460100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83088789..83094085) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTCACTTGTTCAATTCAATTCGCTATTGGAACCCTAGCTTCTCCTCCTCCTTCTCCTTCTGCTCCATTGCAGGGTG CCAGAGTCCTCACGCCCCGAACTCTAGCTACCAGAAACTCAATTCGTGAGGGATCGGAATCGCGATGGGGAAGAAGAAGA AGAGGGTTTCCTCCAAGGTCTGGTGTTATTACTGTGATCGCGAATTCGACGACGAGAAAATCCTGGTGCAGCATCAGAAA GCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCTGGTGGCATGTCCATCCATGTCCTCCAAGTTCA CAAGGAATCCGTCACCAAGTATTGCCCTTCATTCTCCTTATCTAGGGTTTCTCTATTTTCATGTGATTTGTGTCTAAGAG TTGGCCTCATGTTATTCTCCATGTTTATTTAGGAGTATGGATATATAGATAATTAATCACATCCTAAAGGAGATTCTGCA AATTCAGTGTGTTTTGATTTTCATTGACTTCAATGTGGCAACATATAGCTTCTCTGTTTGTGCATTGGCATCTGTGTTTT CCCTTCCGCGTTCAGGAGAAAGGGAAATCAAACATACAATTAGTGAATGCTTTAGTGGCTGGTTACTTTTGACTTTAGAG GAATGATATGGTTTCTCTTGATTACTTATGATCCATGCTCGAATGAATTTCTAATGACGACGAAGCTTGTATGTTATGTG TTTCATGTAATTCCTGTCTAAGAGTTGGCCTCATGTTGTTGATGTTAAATTGTTTTGTGATGTTTTCTTAAGTTGTTTTC GTTCTGTCAATTTTTATTGAGATTTCTTTTTTTTTATCTTTAGGGTGCCCAATGCGAAGCCTGGCAGAGAGAGTACAGAT ATTGAGATATATGGGATGCAAGGGATTCCACCAGATGAGTTGGCTGCTCATTATGGAGAGGAAGGTCATACCTTGTTTTC TGCAACCTTCTGTTCTTGGTTTTAAAATTTTAATGACACAAGTGTCTTTGTTGGAATTAAGATAAAAGCTTCTTACAAAT ATTGTTAGTAATGATAAAGATGTTGAACCAGACATGAAATGTTTAATCTTCTTATGATTTCTTGGTTAATGCAGAGGATG ATGTTCCATCAAAGGCAGCCAAGGTGGATGTCCCATCAGCCCAGCTTGTAGGTGGAATGGTGCCGCCTCCTTTGGGTCCA GGATATCCTCCTCGATCAACCTTGGGCCCAATGCCACCAATGTATGTTTGTTAAAATTGTTGTTCATTTTAATTCTCCTA TTATTCATGTTCTACATAGCATATAGTGCAAGTGATAAACTGTTGAATATTTTATTTATTAAACAATATATGAGTGGCAC AAAATCGTCTCATTTACATACGTGATATTTTTTGCTGCAGGTATAATCACGCTGTGCCTCCTAGTGCATGGCCTGTTCCA CCTCGACCTCAGCCATGGTTTCCACAACCTCCAGCTGTTTCCATGCCTCCTCCTGTTCCTTATCCACAACAGCCATTATT TCCTGTGCAGAATATGAGGCCACCACTGCCATCAACTACTTCTCTAGTTCAAACTCAGATTACTCCTCCTGGATTGCCTA CATCTACACCTTCTGTCCCAGTTTCACAACCATTATTTCCTGTTGTTGGAAATAACCACACATCAAGTCAAAGTTCAACA TTTTCTGCTGCACCTATTTCTCCAGGTGTTGCATCAATAACCCCAGTGCTGTCTTCAAATGTCCCTGTTGATGCACATTT GGGTGTCAACTCTTCTGTGACAAGTAGTTATCAGGCAATAGGGATTCCAGGTAACCTCTTTTTTTCTGTCCTTGAATACT TTTGGCTGGTTTTATGATCCAACTGCAAGAGTGTGTTTGATAAAATTGAGCAATTTTCTATCTTTAGGTTGACTTCGTAT GATTATAGTGATTTCACTTCCTTCTCCCTCTGGTTTTTATAGGTGGGCCAGCAAGTAACTCACATTCTTATGCTTCTGGT CCAAATACCGGTGGTCCTTCAATTGGCCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCCGCCACTAATGA AGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGTCAGTTGTATTCTTGAGGAACTCTGTTGTGTTCCATTTGACT ATTACTATTTATTGATTGGTAATGGTATGATGTTTGGTTGCTGTAGGAGGAAAGAAGAATGTCTTTACCAAAATATCAGG TGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGCAATACATGGAGTTGCTTTCACATCTAACCAGATGAGTAGG TTTTATGCTTCCTATTTACAGATTCAGTTGTTTACGCATTGTTACCTATTTAAAGAGGTATTTCTGTGTAAATTTCTAGC CCTGTTTTGAGAAAATAAATGTCGAAGAAAATATGATCCTTTTAATCCTACCTCTTGCTTCATAACCTAAGGGGTAATTC ATTTTGTTTTATTTTAAATGGTCACTATCGCTAAAAGCTATGCCTCCATTTTTGCGGGCCTCCAAAGGTTCAAGTAGGTA TTCTATTAATTTCTTTGGTAGTTAATTATAGTCACTATAACATAATCTGTGAAGCTTGCTGCAAACAACCAACTTCGTGA TCCTTCATCCCAGCATTTGTACATCGTTAAGAGTATGTATGTATATTTTTGTTGGGTTTGGTTTGCCAATGTTATTCTTT CTCCCCCTGCTTGATTCCAAAAGTTTGGGGTTTACCCAACTGGTTTTTGCCCACTCGTAGCATCATTACATTTATTTTAT GGAACAAGTGAATTCAGACTTGGCCCAGGTCAGCTTCTTTCGCAGAGTTTGGATCTCTTGCATAGGACCAGGCTCTAAAA TATTTGGTTTGTTGTAATTTGTGGTCTATGATTACTTGCTGATCACTATTTTCATGTTTGTCTTTCAGATGAGCTCCATA GATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTGGCCGGTCGTATGGCATTTTAGATCAATCTCATCCATACACA CCTGTCAAATGTCTTCAGTCAAATGTCTTCAGTGATATGGTCTCAGAACGGCGTTTTAATTATCTGCTGACAACATGTGT TCAACATTCCTTTATTTAAGGCAAGTAACCTTGTTATTGTGCCATTCTTTGCCAAAATGGACAGTGGGCTCGGCCCTCAT ATTGAAATCAAGGAAAGAAGGTTGCAATGGGGTTTTGAAATGCTTATCTGGTAATATTTGCTCTAAGGATGTTGCAGAGC TTTGTTTCTTTCTTTTTCCCGTACCTTTTCTCCCTTTGATGTTTTTAGTCAATCTTTTAGGACATGGTACTTCATTACCA TTTGGTGTAATCTACATGTCTTGTGTCTTTGGGAAACAAAATTGACTGCATTTCTTTGTTCTTCGTCATTTGTATTGTTT TACCTTATCGCGAGTGTAAAAGAAAGTCATGAAAGAGGAAAATTACAAACCTTTGCAGACAATAAAACTTATTTGAATAC AACTTTTATATATTCATACTCACTTTCTATTTGAGCCATATACTCACTTTCTATTTCATCCAGTTTCCAGCTTACCCTCT TTTCATCTCTTAATTCTTTTCCTGGGTTCGTTTGGGGACTCACTTTGAGAGGGTAAAGTAAGTATCACAATCATTGATTG AGTTATTTAACTACTAATGGTTATGATGCTTGTTTTACTCTGTTAATCTAGTCTATTCACTTTAGAAGAGTCAAATTCTC GTTTGCTATCACATCATTCATAATAACTATCACTTCTCACTTTCTATTTCATTCATTTTCCAGCTTACTCTCTTTTCATC TCATAATTCTTTTCCTGGGTTTGGGGACTCACTTTGAGAGGGTAAAGTAAGTATCACAATCATTGATTGAGTTATTTAAC TACTAATGATTATAATTCTTATTTTACTATGTTAATCAAGTCTACTCACTTTAGAAGAATCAAATTCTCTTCTGCTATCA CATCATTCAAAATAACTATCACTTCTATCTATGTCTTTCTTTAGGGGTGGAGATGGTATGAGTGTGAATAATTATTTTTT TCTGTTCAAATTGGATACTACTTGGTGTTTTCGCCATCCTTTGGTTCATGTTGATGTGTTGCAATGGTTATAGATCTGAG AAAGCCTATTTGTGATGAGATTTTGGGTGGGGTAGGATTTGGGGATTGTAGGTTTTAAATTGCTGATCACAAAGTATATT AGATGACTTCCTCTTAGCACCCTACAAAGTGATCTTACCCACTTCTTATGAATTAAAACCTTTTTTTTCCATCTTGACTC CACTGGTTCAGAGTGAAGGTCTACTTTAGTGATTAGCCCCCCAAAAAAAGATTGGAGTATGCGATTTCTCAAATGGGTCA CATCTTAGGGTGCGGCTTTCCATTAACAAAATGAATAAATAAAATAGAGATCATCGTAGATAAGACAAATAAAACTGAAA GTCAAAGTTGACACTTTGAAGTCTTCCAAAAGCCAGTGGATATAACAAGGGCCCTCTAAAAATAATTAAATAAATAAACA AAACTATATATTAGCCAACATAATTGTAATTGCAAAATGAGTGTGAAAACCAATTCAGAAATGAGTGTAATTGCAAAATG AGTGTTGAGTCTAAAATAGTTGACATCAAGATTGTGTCAAGAAGGAGAAATCAAGGGCAATACAAAAAAATAATTGGAAA ATGTCATCTCACAAGAAGTTAAGAACGGGAACGGGGATTCAACACAAGGATAAAGAGGGAACACGAAGAAAGAGCAAACC AATTCAGAAAGGACACCCCATTTTTCTGATAACTTAACCAAACTAGAGTACTAAATAATGGACAAGGCTTTCTAGGGATG TAGAACAAGATACAGCTGTGTAGAAGTTGACCCACTACTCTAAGAATTCCAAAATTAGATTGTGTTTCTTTGCCGCATGG AATTTTAGCTGCACCAAAGTGTCTGTCTAAATTTACTCCAAGAGCTAAACAACCACATGCTAAATTGAAATTTAAGTAAA AAAATGAATGTAATTTATAAAAAACTTATTTTGATTACATTACTTTACCTAAGATTATGCTATTAAAAATTGGGTTAAGT TATGCAGAAAAAAATTGGTTTAAGTTATACAAACCCATTTGTAAACTGCTGATGAGAATAACTGCAGGTTAGAATGGATG TTTGAATATACAATGAAAATCTTGTTGAAGTTAAAATTGCGGTAGATAAACACAAAAGTTAATGGAAATTGCTTATATTC ACTACAATTTTAGTTCA
CDS sequence (LotjaGi4g1v0460100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGAAGAAGAAGAGGGTTTCCTCCAAGGTCTGGTGTTATTACTGTGATCGCGAATTCGACGACGAGAAAATCCT GGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCTGGTGGCATGTCCATCC ATGTCCTCCAAGTTCACAAGGAATCCGTCACCAAGGTGCCCAATGCGAAGCCTGGCAGAGAGAGTACAGATATTGAGATA TATGGGATGCAAGGGATTCCACCAGATGAGTTGGCTGCTCATTATGGAGAGGAAGAGGATGATGTTCCATCAAAGGCAGC CAAGGTGGATGTCCCATCAGCCCAGCTTGTAGGTGGAATGGTGCCGCCTCCTTTGGGTCCAGGATATCCTCCTCGATCAA CCTTGGGCCCAATGCCACCAATGTATAATCACGCTGTGCCTCCTAGTGCATGGCCTGTTCCACCTCGACCTCAGCCATGG TTTCCACAACCTCCAGCTGTTTCCATGCCTCCTCCTGTTCCTTATCCACAACAGCCATTATTTCCTGTGCAGAATATGAG GCCACCACTGCCATCAACTACTTCTCTAGTTCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTACACCTTCTGTCC CAGTTTCACAACCATTATTTCCTGTTGTTGGAAATAACCACACATCAAGTCAAAGTTCAACATTTTCTGCTGCACCTATT TCTCCAGGTGTTGCATCAATAACCCCAGTGCTGTCTTCAAATGTCCCTGTTGATGCACATTTGGGTGTCAACTCTTCTGT GACAAGTAGTTATCAGGCAATAGGGATTCCAGGTGGGCCAGCAAGTAACTCACATTCTTATGCTTCTGGTCCAAATACCG GTGGTCCTTCAATTGGCCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCCGCCACTAATGAAGTCTACTTA GTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTACCAAAATATCAGGTGCATGATGAAAGTAGCCA GATGAGCTCCATAGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTGGCCGGTCGTATGGCATTTTAG
Protein sequence (LotjaGi4g1v0460100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKESVTKVPNAKPGRESTDIEI YGMQGIPPDELAAHYGEEEDDVPSKAAKVDVPSAQLVGGMVPPPLGPGYPPRSTLGPMPPMYNHAVPPSAWPVPPRPQPW FPQPPAVSMPPPVPYPQQPLFPVQNMRPPLPSTTSLVQTQITPPGLPTSTPSVPVSQPLFPVVGNNHTSSQSSTFSAAPI SPGVASITPVLSSNVPVDAHLGVNSSVTSSYQAIGIPGGPASNSHSYASGPNTGGPSIGPPPVIANKAPAPQPATNEVYL VWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 361 | 361 | 4.2E-130 | – | |
Gene3D | 2 | 62 | 61 | 3.0E-5 | – | |
ProSiteProfiles | 7 | 66 | 60 | 11.833 | ||
SMART | 12 | 35 | 24 | 20.0 | ||
ProSitePatterns | 14 | 35 | 22 | - | ||
SMART | 36 | 59 | 24 | 0.1 | ||
ProSitePatterns | 38 | 59 | 22 | - | ||
MobiDBLite | 282 | 310 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0460100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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