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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0460500 |
| Transcript ID | LotjaGi4g1v0460500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|Q65Z91|TSK_CHICK Tsukushin; TrEMBL-Plants: tr|G7LCF1|G7LCF1_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi4g1v0460500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83127424..83130224) extracted from Lotus japonicus Gifu genome v1.2.
AATTGGAATTGACAATTTCACACCAAAAAAAATTGTCTTTACATCAAACATTAAATAATTAAAGTATCAAAAATTGTTAA TATGTATGATTGCATGATCTTATGATCTGTAATCCAATTTCAATTTGTTTTTTGTTTCCTTAGTCAAATTTAGATGCAAT TGTGTATCGTACTTTTGCAACGTGGTGGAAAGAGATCAAACATGAGATCACTGTTTGAATAGAAGATGGATTAAATTTCA GTTTTTGCAGACAACTTGACTTAGATGAAAGTGAAAGCTCAAGCAATAGCCTTTTCACCTGTCAAGTTTTTATAAGTGGG GTAGGTACTGGAACTAATTTGAAGTAACTTTGATATATATGCCAACATTACATTTTTGGAGTGGAGAGTTTGAATGGTGA AAGGTGAAAAAATTTGAAGTTACAAGCTTGCAGAAGCATGCAAGTTCAGGACTTGGATTGGATATTGGTGCCTTTGGGTG TGTTGGTGTTGGGAATTTATCATGTTTGGCTTCTCTACACTCTCATCCACTACCCATCTCGCACTGTCATTGGCTTGAAT GCTCAAACACGTTATCAATGGGCTCTTTACTTGATGAATGTAAGTATCTCTCTCCCTCTATTTCTTGTATGTGTTAATTG ATGCACTTCACTACGTGTTTGGAAATTCTTCTACAACTGATTCTAACAGAAAAATGAATTATCGGGAGAAGCTTCTATCT ATGAGTAGCTTCTGGTGCCAGAATTGATTCTCACGAAAAATAAACTCATGAAACATGCTATTAACTAGTCTTTGTTACAT TTGTCTTGTGTGCTTTCGGTTGTTTCTGTCTTTCTCTCGCAATATTGTGTCTTCTTTTGTCCAATTATATTCAGAGTAAG CTTGTATCTATATTGGTTTCAAATTTTCTAGTTAGGATATTAACATTGGCATATATTGAAACTTAAATTCATCGTGCATT TTCAATTTGATTGGAAATCAGTGAAGTGAGTGGCAGCATATTTGAGTTGCTTCTGATAAGAAGTTCATTACTTCTTGCTA TAGTTAAGAAATCCTGTAATTCATGAGAGAATGTTGTTAAAAAGGAACCTTATTGTTTTGTCTGTGAATGAGGTCTGAGA AATTTGAGGATCTCGGTTCTAGAGTTCTATATATTTCAGTTATTTTGTCAACAAAGGATTCAACAATCATGTGGTTTTCT GAAATTTATCCCAACTCCTGCTATTTAAGCTGAGATTTTCTCAAATGCTGTGTTGGGGATTTTATGCTGAAGTTGGTGCT TCAAGCTGGCTATAACTTGGTTGATAGTTATTGTACAAGATTAATTAGTACCCTTTGAAATCAGCATTGAGTTGCCTGGA ACTCCAAACTTATTAAGCCATTAGGATGCAACATGTTTCCTTTTATATTGTCTAAATTCCTGTCCCTCTAAATAAACATA CTGATACTTACAAGATTTTTCTGTGCATAATCCATTGCGAGTTCAGCTTGTTGAAAGTTGGTTGGGAATTGGGATATTAT GTGACAGCTCTTCAGTAAAATTTGTAATTTTAAGAAAACTCATTCTGGTGTGATTCTGGGGTTAACTTATAGCATGTTAG GATCAGCATCTATTTCCCCAGAATCAATTCGGAAACCCAGAAATTGCTTACAGAAACTTCCAACAGAATTGATTCTGGCT TCAGAATCAATTGTAGAATGATTTCTAAACATGCACTTAGATTAATATCATTGCTGATGCCATGTTAGGTTAGAGATGTT AGCTTGTTTGTGAACTGGATTACTCAGTCTTCTTTTTCCTTGCATCCCACATGCCACAACCCACAATTTCAGAAGTAAAT TTTCAACATACTCCTTTGCTTTGTTTTCAGGATCCCTTGAAAAATGGTATTTTAGCTGTTCAAACAATCCGCAACAATAT GATGGCATCCACTCTTCTTGCTACAACTGCAATCACACTCAGTTCACTAATTGGTGTTTTCGCGAGCAATGACTTAGAAA CCCAATTAGTTTATGGAAACAGAACTTCCATTACTGCTTCAATCAAACGCCTTTCTATGTCGCTATGCTTCCTTGTCGCA TTTCTATGTAACATGCAGTCTATCAGATACTATGCACAGGCAAGCTTCTTAATCACAACTCCTGCACTCAAAGGCAAGAA AGATTTCATTGAATATGTTGCGAAAACCTTGGACCGTGGAAGTTATGCTTGGTCTCTTGGTTTAAGGTCATTTTACTTGT CAATTCCTCTAGTCCTCTGGATTTATGGACCCATACCCATGTTTGTTTGTTCCTGCTTGACATCATTGACTTTGTACTTC TTGGATACAACCACACAAATAACACAGGATCTTCACATTAAGTCATTCAAAAGGAGGGAAAGTGAAGATGTGGAAGCAGC ATAGGTCCACCATATGACATGTTTGGTTGCACGCTTGCAATCCACGTTTAGAGACCAAAATCAAATTCACTCATTAGCTG CAATGCACCAAAGCATGTTCACTCATAAGCTGCAATGCATAGCTTCTTGGCTAGCGTGTGTTCAACAAACATCAAAACAT GTTGATAATCATTGTAACTGTTGTTGAAACATGTAACATGCTGCTGATAATCATGAAATATGTGTAGTCATGTTTCATAT AGTTAGAGAACAAAATAAGTTTGCTGATGTATTAGCCAAATCAGGAAGTTGTAGTAAGGAAGATTTGCGGACTCTTTGTT AAGGTTTATTTTTGGAAGTCTTATGCATGTAATCCTTCTTGAGAGGGCTGTTCTCACTACACCAAAATGCGCTATTTAGC G
CDS sequence (LotjaGi4g1v0460500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGTTCAGGACTTGGATTGGATATTGGTGCCTTTGGGTGTGTTGGTGTTGGGAATTTATCATGTTTGGCTTCTCTA CACTCTCATCCACTACCCATCTCGCACTGTCATTGGCTTGAATGCTCAAACACGTTATCAATGGGCTCTTTACTTGATGA ATGATCCCTTGAAAAATGGTATTTTAGCTGTTCAAACAATCCGCAACAATATGATGGCATCCACTCTTCTTGCTACAACT GCAATCACACTCAGTTCACTAATTGGTGTTTTCGCGAGCAATGACTTAGAAACCCAATTAGTTTATGGAAACAGAACTTC CATTACTGCTTCAATCAAACGCCTTTCTATGTCGCTATGCTTCCTTGTCGCATTTCTATGTAACATGCAGTCTATCAGAT ACTATGCACAGGCAAGCTTCTTAATCACAACTCCTGCACTCAAAGGCAAGAAAGATTTCATTGAATATGTTGCGAAAACC TTGGACCGTGGAAGTTATGCTTGGTCTCTTGGTTTAAGGTCATTTTACTTGTCAATTCCTCTAGTCCTCTGGATTTATGG ACCCATACCCATGTTTGTTTGTTCCTGCTTGACATCATTGACTTTGTACTTCTTGGATACAACCACACAAATAACACAGG ATCTTCACATTAAGTCATTCAAAAGGAGGGAAAGTGAAGATGTGGAAGCAGCATAG
Protein sequence (LotjaGi4g1v0460500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVQDLDWILVPLGVLVLGIYHVWLLYTLIHYPSRTVIGLNAQTRYQWALYLMNDPLKNGILAVQTIRNNMMASTLLATT AITLSSLIGVFASNDLETQLVYGNRTSITASIKRLSMSLCFLVAFLCNMQSIRYYAQASFLITTPALKGKKDFIEYVAKT LDRGSYAWSLGLRSFYLSIPLVLWIYGPIPMFVCSCLTSLTLYFLDTTTQITQDLHIKSFKRRESEDVEAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 229 | 229 | 6.1E-134 | – | |
| PANTHER | 1 | 229 | 229 | 6.1E-134 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| Pfam | 9 | 209 | 201 | 4.3E-69 | ||
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 28 | 70 | 43 | - | – | |
| Phobius | 71 | 92 | 22 | - | – | |
| TMHMM | 72 | 94 | 23 | - | – | |
| Phobius | 93 | 111 | 19 | - | – | |
| Phobius | 112 | 129 | 18 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 130 | 180 | 51 | - | – | |
| Phobius | 181 | 205 | 25 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 206 | 231 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0460500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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