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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0460600 |
| Transcript ID | LotjaGi4g1v0460600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF599); TAIR: AT3G18215.1 transmembrane protein, putative (Protein of unknown function, DUF599); Swiss-Prot: sp|P0CM47|PALA_CRYNB pH-response regulator protein palA/RIM20; TrEMBL-Plants: tr|I3STV9|I3STV9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0460600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83134509..83137383) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGATGAGCGCTTGGAGCATTTGTTGGTGGTGCTGGGTCTGTTGGTGTTCTTGATATACCATATCTGGCTTCTCTA CACCATAGTATACAACCCTGTTCGAACTGTCATTGGCCTAAACGCAGAGTCTCGTCATCAATGGGTTCTTTTCATGATGA GTGTGAGTACTTCCCTTGGTTGCTGGTTGAGTTTACTCCAAACTTTTCTATTTCTTTCAATTGATGACAACAAGTTTATA TTTTGATTTTAAAGTTAGAATCTTTTGATTATGAAAGTTGACATTAAATCTTGTATGCTAGCTGTTGTGACTATTCTTAT GACTAGGTAGTTCCCCTTCTTTCTTGAGCTCATTGAAGCAAGGGCAATAGCAAATTCCCATTTTCCCTTCAATGAAGTTC TCAATGAAGTGCATTATCCTCTTGAATGTGAATTAATTTCAACCTGTTGGTGATGTGTATCAGGATAAATCTAACACCAA AGTAGTAGAATCAGCCATTTTTTTATTTATGCACTTGGGCTGAACATTTTTTCAAAGACTTACGGTTATTTACAGCAAAA ATGGGTATTACTCTGAACATGTTATTACTCTGATTGGTTGAGACCCTGCTGAAATTGTTAACATTGAGTGATAGTAGTCA CTCTAGATGCTCGATTCTCTTAGGAAAGTCATTTTTTTCAAGTTAACACGGAATCTAGAATACTATATTGTTCAAGTTTA AGTTGAACAAGACTTGTTAATATGTCCATAAAAATAATATATTGAGTTACATGCTTTCCAATTTCAACTCATTGAAAACT TGGTTGTTTAAGTTGTATGTTTTCTTTTCCACATTTCAAGTCCTCTGGTTTTTTAGTTGGCAGAAATTGCTGTTTCTAGC CCCTTCAAATATAACAAGATTTGCTTTCAGACCCTGCTAATATAGCGATTTTTTTTCCATGTTCCTTTATGAACATCCTT TAAACACATGGCACAGTTGATGTGAGTTTTTGTTTGCCACATCAACATTTAACGGAGTTTAGTTATCAAAAGTAAGAATT TGAAAAAATTAGAGATGGAAACAGGACAAGAAAAAACTTTCACTGTATTTGTAAGGACTAAAAATACATGTAAAGCCTTT AAATAAGCTAATGGATGGTGGAAACCTTGATGAGTTATTGTACCAACTACCAACTGAGGACTAAAAGTATATGTAAAGCC TTTATTTTACTGATCTGTTTTATCAGTAATGTTTTTCAGATGCTTTCTTCTGCTGTCTATCTCAAAAGAGGTCATTTAAA TATAGACATCTCCCATTGAAGTGTAATTTGTTGAACCTTCTGGTAGTACTCCTTACGGGCTCTTACATAAGACATGTAGT GTTTTTTTTTAAATCGACATGTAGTGTTAGCGGGAACCCAACTTGTTGTTTCTTTGCATGTCCTCTCTTCTTCGCTTTAA AGGTTAGTAAGCTTTCTTGTTTGGCTCCACTAACTCTCAGTTTGAAATGATCAAACACCAATTCAGGAAACTGGCAAGAT GTGTCTAGAAGTTGATAATGAGATAAAATCATCAAAGAACTACCACCACATGGTTATGTGTGCACTTCTTATGAACTATA ATGAAGCCCTGCTTTTGTCTTGCATTTTGATATTTAGGAAGATCAAGTGTATAATTGGAAAAGAAAACTCAACAGAAGAA ACACTTAAGAGCACATTCTGAACGTTAGGTAATTGATGCTTCATTGTTGCTTCAATGTGCTTTCCTTAAAACTTAGTGTT TGCTGCTTACTGGTAAGGGTGTGATACTAGGCTTGTCTTTGATTGAGGGTGTGTTTGGAAGAGCTCATTTGAGTTTATCT TATACGGTTATACCATAAGCGCCTTATTTGAGAGCTTATGAAAATAGCTAATAGCCTAATAACCTATCTACTAGCTATTT TGAATTTATTTTCATAAGCTGCTCAAATTAGCTTATGAATAAGCGCTTATAACCTATAAGCTATTTGTAACTTATTTGAT TAAGCTTATCAAAATAGCTGATGTGGTAAGCACTTATGTGATAAGCACTTGTTCCAATAAGCGCTTAACTAAGTTGTTTA CCCAAACGCACCATGAATATCCTTGTTATTTGGTCTTTTGAGGTTCTGATTTTGTGCAACATTGTCTTCATGTTTTTTTC CTCGCTTTTCTCATTCATCAAACCCCCCTCACCTTCAGAAATCATTTTGGCAAGCTGTGAACATAATTTCTTGAATTAAT TCCATTGCAATAATTTCAGGATACCGCGAAGAATGGGGTCTTAGCTGTTCAAACTATCCGCAACAATATCATGGCATCCA CTCTTCTTGCTACAACAGCAATCACACTCACTTCACTGATTGGTATTTTTGCTAGCAATGCATGGAATACTGATGACACT GCTCCCATTCTTTACAGTATTTCTTCAATGAAACGTATTTCTATCACCGTATGCTTCCTTGTTGCATTCTTATGCAATGT GCAGTCTATAAGATGCTATGCCCATGTAAGCTTTTTGATCAATGCACCTACACTCAGAGACAAAAGAGAATACATGGAAT ACATTACAAAAACGTTGAACCGTGGAAGCCATTCTTGGTCCCTTGGATTGAGAGCATTCTACTTGTCATTTCCTCTGTTC CTCTGGATTTATGGACCCATACCCATGTTTGTTTGTTGTTGTTTGACATCATTTATTTTGTACTTCTTGGATACAACAGC TAAAATCGCAAGGGATCTTCACAGCAACTCATTCAGGAAGGAGAGGGGAACTCATGATGTGGAATCTGCAGTGGAGCCTG ATTACCATCCTTTAGCTGGTAACAATTTGTCTTAAGAAACAAGTGTGGATCATGTATAAATAATTAAACATGTAG
CDS sequence (LotjaGi4g1v0460600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATGAGCGCTTGGAGCATTTGTTGGTGGTGCTGGGTCTGTTGGTGTTCTTGATATACCATATCTGGCTTCTCTA CACCATAGTATACAACCCTGTTCGAACTGTCATTGGCCTAAACGCAGAGTCTCGTCATCAATGGGTTCTTTTCATGATGA GTGATACCGCGAAGAATGGGGTCTTAGCTGTTCAAACTATCCGCAACAATATCATGGCATCCACTCTTCTTGCTACAACA GCAATCACACTCACTTCACTGATTGGTATTTTTGCTAGCAATGCATGGAATACTGATGACACTGCTCCCATTCTTTACAG TATTTCTTCAATGAAACGTATTTCTATCACCGTATGCTTCCTTGTTGCATTCTTATGCAATGTGCAGTCTATAAGATGCT ATGCCCATGTAAGCTTTTTGATCAATGCACCTACACTCAGAGACAAAAGAGAATACATGGAATACATTACAAAAACGTTG AACCGTGGAAGCCATTCTTGGTCCCTTGGATTGAGAGCATTCTACTTGTCATTTCCTCTGTTCCTCTGGATTTATGGACC CATACCCATGTTTGTTTGTTGTTGTTTGACATCATTTATTTTGTACTTCTTGGATACAACAGCTAAAATCGCAAGGGATC TTCACAGCAACTCATTCAGGAAGGAGAGGGGAACTCATGATGTGGAATCTGCAGTGGAGCCTGATTACCATCCTTTAGCT GGTAACAATTTGTCTTAA
Protein sequence (LotjaGi4g1v0460600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDERLEHLLVVLGLLVFLIYHIWLLYTIVYNPVRTVIGLNAESRHQWVLFMMSDTAKNGVLAVQTIRNNIMASTLLATT AITLTSLIGIFASNAWNTDDTAPILYSISSMKRISITVCFLVAFLCNVQSIRCYAHVSFLINAPTLRDKREYMEYITKTL NRGSHSWSLGLRAFYLSFPLFLWIYGPIPMFVCCCLTSFILYFLDTTAKIARDLHSNSFRKERGTHDVESAVEPDYHPLA GNNLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 241 | 241 | 1.2E-120 | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 1 | 241 | 241 | 1.2E-120 | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| Pfam | 9 | 208 | 200 | 6.7E-69 | ||
| Phobius | 9 | 30 | 22 | - | – | |
| Phobius | 31 | 70 | 40 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 71 | 93 | 23 | - | – | |
| Phobius | 94 | 113 | 20 | - | – | |
| TMHMM | 114 | 131 | 18 | - | – | |
| Phobius | 114 | 137 | 24 | - | – | |
| Phobius | 138 | 179 | 42 | - | – | |
| Phobius | 180 | 204 | 25 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| Phobius | 205 | 245 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0460600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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