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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0461000 |
| Transcript ID | LotjaGi4g1v0461000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | T-complex protein 1 subunit delta; TAIR: AT3G18190.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9LV21|TCPD_ARATH T-complex protein 1 subunit delta; TrEMBL-Plants: tr|C7C6E1|C7C6E1_SOYBN T-complex protein 1 subunit delta; Found in the gene: LotjaGi4g1v0461000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83160610..83163334) extracted from Lotus japonicus Gifu genome v1.2.
TGAAACCATTCACAAAAAACACCACACTAGTTTTTTCCTCTTAAATAAACAAATCAGTTTGAATCGGGACTCAACACAAC AAACACTTTGCTCTCACTGAATCATTGTTAGGGTTTCCAATGGCGGCAATTGCAGCTCCTCACCGATCCTCCAAGACGGA ATCCTATGTCGACAACAAGCGCAAGGAAGACATCCGTCATGCCAACATCGTCGCCGCGCGCTCCGTCGCCAACGCCGTCC GCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATTTCCACCTCCTCCGACGAGGTTATCATCACCAACGACGGTGCC ACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCCAAGATGCTCGTCGAGCTTTCCAAGTCTCAGGACTCCGCAGC CGGCGACGGAACCACCACCGTCGTCGTTATCGCTGGCGCACTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCGCGGCATCC ACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCTATTAAGGCCGTCGACGTCCTCACTGCCATGGCCGTCCCCGTC GAGCTCACCGATCGCGATTCACTCGTCAAATCCGCCAGCACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACCCT TCTCGCTCCCCTCGCTGTCGACGCCGTCCTCACAGTCATCGATCCCGCCCAGCCTGAAATGGTCGATCTCCGCGATGTTA AGATCGTGAAGAAGCTTGGGGGCACCGTGGACGATACCGAGCTCGTCAGGGGCCTTGTCTTTGACAAGAAGGTGAGCCAT GCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATTGCCGTGATCCAGTTCCAGATTTCACCGCCGAAAACCGACAT TGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTACATTCTGGGCATGA TTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGATTCAGAAGAGCATTTTAAGAGATGCTGTCACTGATTTGTCT CTGCATTACCTTGCTAAAGCTAAGATATTGGTGATCAAGGATGTGGAAAGGGATGAGATTGAGTTCATTACCAAGACACT CAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGCCGAGAAGTTGGGTTATGCTGATCTTGTGGAGGAGGTTTCTC TTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGGACATGGGGAGGACCACAACTGTGCTTGTCCGCGGATCCAAC CAGCTTGTGCTAGATGAAGCGGAGCGGAGTCTTCATGATGCTTTGTGTGTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCT CATAGCCGGCGGTGGCGCACCTGAGATAGAGCTGTCCAGGCAACTGGGTGCCTGGGCAAAGGTGCTTCATGGGATGGAGG GTTACTGTGTTCGAGCATTTGCTGAGGCACTTGAAGTCATTCCTTATACTCTGGCTGAGAATGCTGGTTTGAACCCCATT GCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGTGAGATCAATACTGGAATCAATGTGAGGAAGGGTCAGATCAC AAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGTAAGCACGAGTGCTATCACCTTGGCCACAGAGTGCGTGCGGA TGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAGAGGTTACGATTTAGACCAAGAGACAAAAATTTGCAGAGGAAA AAAACAGAATCATCATGTTGTCTTTTCTTGCTTTAATTTTGAAGTTGTTAGTTTATGTTCCTTTTAGTGACACTGATTAA GTGATTTTTGACTTGCTCTGGCTAGTATTGTTATTTGCAAATTTGGATGTCCTTATTATGTGTATTTGGGAGTTCATCAA TAGTTGATCATTTTTCTTAGTGCCATGGCTGTTGATTGTATTAATGACTTCATGTATTTCCCTTCCCCTGACCATGTGAT TTGATCGTTACTCCAAATTGGTTGCTTGCTTCTTAAAGTAAATCATTTAATATTTTCTTGCAATTGTGGGGATTATGTAT ACTCTGAGCTTGCTAAAAGAAGCTTCACTGGACTTGCTCATGAAATTATGGAGTATCATTGAGTTAAGTTATATTTGATC TTTTAGATATGTTGGAATCTGGGGGGCATCTTTGTTTTGGAGGATGCATTGATTTGGCAGGAGGGGAAGCTACAATTGCC ATTGCACCATGACATATTTATCGCTGTGTTTTCGATTTCCTGTTATTAAACCAACTCTTCAGGTGTTTTTGTATTTGAAT TCTGTTTTTTAAGTTAGAGGATGGTTACTGAGTAGAACTCCATTGGTTGCTGACAAGGGGACCCTGTTCCATTGGTTGCT GAATCAAGTAGAACTCATGAAGTTGTTACTTGGTATAAAGTAGAACTAATCCATTTGGTGCTAACGACAAGATAAAAAGG ATTGATTTCTCTAATTGGTTTTCAATATTTATATGTTTGAGATTTGCAGTTGTTCTCGTGGCAAATGTTTCTTTGATATA GGAAATATACATTTACATTTACAGTTACATGTTGTGCAGTAAAAGCCCATGAAACTTGCTTCTACATGATCAAATTTGAT CCTGTATTCTTCTATTCTCTTGAATGCACCTCCAATTTTTTTTACCTTAAACCAGCTTTACCTTGAGTTATTGACTCTAA TAAAC
CDS sequence (LotjaGi4g1v0461000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAATTGCAGCTCCTCACCGATCCTCCAAGACGGAATCCTATGTCGACAACAAGCGCAAGGAAGACATCCGTCA TGCCAACATCGTCGCCGCGCGCTCCGTCGCCAACGCCGTCCGCACCAGTCTCGGTCCCAAAGGCATGGACAAGATGATTT CCACCTCCTCCGACGAGGTTATCATCACCAACGACGGTGCCACCATCCTCAACAAGATGCAGGTCCTCCAACCCGCCGCC AAGATGCTCGTCGAGCTTTCCAAGTCTCAGGACTCCGCAGCCGGCGACGGAACCACCACCGTCGTCGTTATCGCTGGCGC ACTCCTCGAGCAGTGCCTCCTCCTCCTCTCCCGCGGCATCCACCCCACCGTCATCTCCGATTCACTCTACAAGGCCTCTA TTAAGGCCGTCGACGTCCTCACTGCCATGGCCGTCCCCGTCGAGCTCACCGATCGCGATTCACTCGTCAAATCCGCCAGC ACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACCCTTCTCGCTCCCCTCGCTGTCGACGCCGTCCTCACAGTCAT CGATCCCGCCCAGCCTGAAATGGTCGATCTCCGCGATGTTAAGATCGTGAAGAAGCTTGGGGGCACCGTGGACGATACCG AGCTCGTCAGGGGCCTTGTCTTTGACAAGAAGGTGAGCCATGCCGCTGGTGGACCTACTCGCATGGAGAATGCTAAAATT GCCGTGATCCAGTTCCAGATTTCACCGCCGAAAACCGACATTGAGCAGAGCATTGTGGTGAGTGATTACTCTCAGATGGA TAGGATTTTGAAGGAAGAGAGGAGTTACATTCTGGGCATGATTAAGAAGATTAAGGCAACTGGTTGCAATGTTTTGTTGA TTCAGAAGAGCATTTTAAGAGATGCTGTCACTGATTTGTCTCTGCATTACCTTGCTAAAGCTAAGATATTGGTGATCAAG GATGTGGAAAGGGATGAGATTGAGTTCATTACCAAGACACTCAACTGTTTGCCCATTGCCAACATTGAGCATTTCCGCGC CGAGAAGTTGGGTTATGCTGATCTTGTGGAGGAGGTTTCTCTTGGTGATGGCAAGATTGTGAAGATTTCTGGGATTAAGG ACATGGGGAGGACCACAACTGTGCTTGTCCGCGGATCCAACCAGCTTGTGCTAGATGAAGCGGAGCGGAGTCTTCATGAT GCTTTGTGTGTTGTTAGGTGCTTGGTTGCCAAGAGGTTTCTCATAGCCGGCGGTGGCGCACCTGAGATAGAGCTGTCCAG GCAACTGGGTGCCTGGGCAAAGGTGCTTCATGGGATGGAGGGTTACTGTGTTCGAGCATTTGCTGAGGCACTTGAAGTCA TTCCTTATACTCTGGCTGAGAATGCTGGTTTGAACCCCATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCCCAGGGT GAGATCAATACTGGAATCAATGTGAGGAAGGGTCAGATCACAAACATCTTGGAGGAGAATGTGGTGCAGCCGCTGCTAGT AAGCACGAGTGCTATCACCTTGGCCACAGAGTGCGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG
Protein sequence (LotjaGi4g1v0461000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAIAAPHRSSKTESYVDNKRKEDIRHANIVAARSVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMQVLQPAA KMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSRGIHPTVISDSLYKASIKAVDVLTAMAVPVELTDRDSLVKSAS TSLNSKVVSQYSTLLAPLAVDAVLTVIDPAQPEMVDLRDVKIVKKLGGTVDDTELVRGLVFDKKVSHAAGGPTRMENAKI AVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIK DVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKISGIKDMGRTTTVLVRGSNQLVLDEAERSLHD ALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVRAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQG EINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 192 | 184 | 1.3E-49 | ||
| PANTHER | 12 | 530 | 519 | 5.8E-277 | – | |
| PANTHER | 12 | 530 | 519 | 5.8E-277 | – | |
| CDD | 18 | 531 | 514 | 0.0 | ||
| TIGRFAM | 18 | 531 | 514 | 7.3E-262 | ||
| SUPERFAMILY | 19 | 530 | 512 | 3.01E-83 | ||
| Pfam | 36 | 530 | 495 | 1.9E-155 | ||
| PRINTS | 38 | 54 | 17 | 3.3E-32 | ||
| ProSitePatterns | 41 | 53 | 13 | - | ||
| PRINTS | 60 | 78 | 19 | 3.3E-32 | ||
| PRINTS | 90 | 109 | 20 | 3.3E-32 | ||
| ProSitePatterns | 90 | 98 | 9 | - | ||
| SUPERFAMILY | 147 | 410 | 264 | 1.92E-29 | ||
| SUPERFAMILY | 212 | 385 | 174 | 1.75E-47 | ||
| Gene3D | 218 | 373 | 156 | 3.4E-73 | ||
| Gene3D | 374 | 532 | 159 | 6.7E-51 | ||
| PRINTS | 380 | 402 | 23 | 3.3E-32 | ||
| PRINTS | 414 | 426 | 13 | 3.3E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi4g1v0461000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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