Transcript — View — Lotus Base

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LotjaGi4g1v0462000.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0462000
Transcript ID	LotjaGi4g1v0462000.1
Lotus japonicus genome version	Gifu v1.2
Description	Pre-mRNA-splicing factor SPF27; TAIR: AT3G18165.1 modifier of snc1,4; Swiss-Prot: sp\|Q949S9\|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog; TrEMBL-Plants: tr\|I3SET9\|I3SET9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0462000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:83257699..83260794) extracted from Lotus japonicus Gifu genome v1.2.

CATAGCTGCAGTTTTTGGGTAATTGGGCTTGGGCTTGAAGAACGAAGTGATGAAGCCCAAGACAAACTCTTTTGTTCTGC ACTGGCGAGTGGAGCGGAAAACCCAGTCCTTGTCTTTGTATCTCTCTGTGTTCTTCAATCTGCAGCAGCAATAGGAAGCA ACCATGGGTGAAGTTCTGATGCTGGAGGCTCCACCCTCCTACGGTGGTTTGCCTAGGAGTTCCGACGCCGAAATCATCGA CGCTTTGCCTTACATCGACGATGACTACGGCGACCCTAGAGTGAAGGTTGAGGTCGACCGTCTCGTCGAGGATGAGATGC GCCGCAGCTCCAAGAAGCCCGCTGATTTCCTCAAAGATTTCCCTCCTCTTCCCACCTCTAATCTTGAGGTACTAGTAACC GCATCTCTCTTTCCCTACCAACCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACAAGGGTTTTGTTGGAG CTGGGTTTTGTTTTAAGTATAATTTCATGCTCTCTTTCTCTTTGTGTTGTGTTGTGTTGTGTTGTAGGGTTATCCAATGA TTGCTAGAGAGTATGAGCGTGTGAGAGCTGGAAGACCTCCTGTTTCCATTGACAGGTCGCGATATGAATTAGAAATACCT CCGCTTAACAAAAGGAATGATGAAACTGCCTGGAAGCATGCTCTTCAAAGAGCTCAACGCCTCCTGCAATATCAGATGAT GAGGTATGCGACCCAGTTTACGATTGTTTCTGAATAGGAAGCTAGTTGTTTACGATTCATTGTTTGATTTCAGGATGGAA AATATAGAGTTGTTGTTAAAGTATGGCCCTGATGCCTGGAAACAGCACAACCACCGATTGGAAGTTTACTTGTTAAGGTT TGTTCTTTCAATTATTGCTCAACTTTTGTGCCTGTGTATCTTTTGCTTCATACATTCTTAGCATAACTTTGAATAGATTT GGTAACACTCTTGTTTAGAGCATTTCTTTGTTCACTGCTTCTCATAGCCTATGTACCTTGTATTTTTCATGATTTGACAA GATTTAATTAATATTCTGAGAGGCATGCCTATTTGACAAATGAGTGAAGATTGTTTGAATGTAAATAAGCCAGTAGATTA AGACGAGAAGGAGACCACAACAGGCTATACTCTATTGATCCCCTCTTCAGCTCTAAATATCAGAGTATATTTAATACAAG CTCAGTGAAATAAGGAATCCTGATCCTTAGTAAAGTGTCCTAAAACTCCTGAAACACTAGAGCTATGATTCATTTCCACT CCACTTTCTGTCTATCTCTCTTCTCTTCTCTATCAATCATATCACCTATCACATATCTTACTTTCTCTTTCTTTTCTTCC TATCTCTCTCTTCTCTCCATGCCGTTTCCACTTTTTAAGGAGTGTGAATGAAGCTTCATCCTTCTAAGAATAGGGACCGC AGCAGTAAACCAAAAATTGGGAGACAGGCAGTCAGACATCTTATCCCTATTGAAAGTCTTCTTAACTCCGTTTCTTCAAT TAAAGGCAGCTCTTTTTCATCATCATTAGGCACGACCATAGCTCCCTGAAATTACTGAAATTATTTTAAGGGCTGTATTT CACAGCATTTGTGTCTTTTTTCTTTCTTTCATTTTAATGGTGAGGAATTATTATTCCACTTCGTTCAATATGGAAGCTTG ATCTGCTACAGATCATCATGTTTGTACAACTAATCTGCAAGTTTCAACATCTTTGTCATCATGTTTAGTCTGTACTTGTG AGTCTACACATTGTGTCATACAGTTCAATTTACATGCACACAGTGTGTTGAGTAAGAGATAAGAGGAGTTAATTTTGACC ATTCAATATCACATAGATGATTGGAACTAGATCCAATCTTGACCTTTTTTAATAGTTGCTAGTTAAGATTTGCTTTTTTC AGTTCAAACCTTTTACACTATCATTTGATATGCTTGCACTATATCAATATATGCAGAAACATGCACATTCATCTCACTTA TTGATATAGATAGATCAAAAAGATGTTGCTTGAGCTCGATAAAAACGGTTCTTTGCCTGCATAGTTCATTTTCGTATGGC ATTGGTTAGAGTTGTGTTATTTATTTTCAGAATGCAGAAATTAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTAAATC GTGAAAGGAAATATCACCAGGTGAATATGAATTTCTTGTTAACTCTTCTCCCTTGTTAAACTTTGTTCATGTTTTTACTG AAAATCACTTTTTAAAACTATTTTCAGCAAAATACTGCATATGAGCTTAATGCATTGTCCACACAATGGAATGAGCTCTG TCAGAAAAATATAGACATCAATGCTGCGTGCGCATCAGTTGAAACTCGCATAAATGAGCTGAAGAGAGAAGCAGCAGAAA GGTGAGACTGCTATGCAAATTGTATTTTTCTTGGCTGATTTCATCTACGTCTAGTTTTGGTGTTAATTAGTTTCTTCTCT TCTCAGAGGCTGGAACTTGGATGCTATCTCTGAAAATGGCCAATTGGCCAATTCGGAATCATGAGATTCACATGTCCTCA TTATGTTTTGTAATTTCTATCCGTGGTGAATTTGTTCAGCTCAAAGCTTGACTTTAATTGCTACTGTATTCGTCAGTGTT TAGTTTAATATCGTGAAAAAGTTACCTGTTTGCTCACCTGGTTTTAAAAGAAGAAGAATGTTAGAGCAACCTGGTTTTAA AAGATTAATAGCCGCGCTCGTTTAGGATAAGTGAGTTGGATAAAGATATGATGTGTCCATTTGTTTTAGAGTTGGGTAAA ATAAAGTTCGCCAAAAGTATGTTTGATATAATTATATTTGTTAAGATAAATTTGTGTTTGGGGATTCCGTAGTAAATAGA AAAGAAGAGTGTTGTTTGGATCAAAATTAAAAAAAAATGTTTGGATAGAATAAAGTGAAATTAATTGACATATTCAATTA CTAAAATTGGCATAGGTGGTGTTTCAATACCTGTAATTTTGTAAAATAACATCAATTTGGCTTATTGAGTTTTACTTGAT TGAAAAATACGTACTTCACACATGTTACAATTTGTGGTAATTCACTTATTTCTGAC

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0462000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGAAGTTCTGATGCTGGAGGCTCCACCCTCCTACGGTGGTTTGCCTAGGAGTTCCGACGCCGAAATCATCGACGC TTTGCCTTACATCGACGATGACTACGGCGACCCTAGAGTGAAGGTTGAGGTCGACCGTCTCGTCGAGGATGAGATGCGCC GCAGCTCCAAGAAGCCCGCTGATTTCCTCAAAGATTTCCCTCCTCTTCCCACCTCTAATCTTGAGGGTTATCCAATGATT GCTAGAGAGTATGAGCGTGTGAGAGCTGGAAGACCTCCTGTTTCCATTGACAGGTCGCGATATGAATTAGAAATACCTCC GCTTAACAAAAGGAATGATGAAACTGCCTGGAAGCATGCTCTTCAAAGAGCTCAACGCCTCCTGCAATATCAGATGATGA GGATGGAAAATATAGAGTTGTTGTTAAAGTATGGCCCTGATGCCTGGAAACAGCACAACCACCGATTGGAAGTTTACTTG TTAAGAATGCAGAAATTAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTAAATCGTGAAAGGAAATATCACCAGCAAAA TACTGCATATGAGCTTAATGCATTGTCCACACAATGGAATGAGCTCTGTCAGAAAAATATAGACATCAATGCTGCGTGCG CATCAGTTGAAACTCGCATAAATGAGCTGAAGAGAGAAGCAGCAGAAAGAGGCTGGAACTTGGATGCTATCTCTGAAAAT GGCCAATTGGCCAATTCGGAATCATGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0462000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGEVLMLEAPPSYGGLPRSSDAEIIDALPYIDDDYGDPRVKVEVDRLVEDEMRRSSKKPADFLKDFPPLPTSNLEGYPMI AREYERVRAGRPPVSIDRSRYELEIPPLNKRNDETAWKHALQRAQRLLQYQMMRMENIELLLKYGPDAWKQHNHRLEVYL LRMQKLAQEQNEKIEKVNRERKYHQQNTAYELNALSTQWNELCQKNIDINAACASVETRINELKREAAERGWNLDAISEN GQLANSES

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13296:SF0 View details on PTHR13296:SF0 Search for proteins/transripts with this domain View external data on PTHR13296:SF0	16	231	216	1.2E-85	–
PANTHER	PTHR13296 View details on PTHR13296 Search for proteins/transripts with this domain View external data on PTHR13296	16	231	216	1.2E-85	IPR008409 Show description in modal box View details on IPR008409 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05700 View details on PF05700 Search for proteins/transripts with this domain View external data on PF05700	23	229	207	1.8E-69	IPR008409 Show description in modal box View details on IPR008409 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	160	187	28	-	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	206	226	21	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006397 View details of GO:0006397 AmiGO InterPro QuickGO	Biological process	MRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.	Subterm of View details of GO:0006396 View details of GO:0016071

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0462000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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