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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0000900 |
| Transcript ID | LotjaGi5g1v0000900.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT2G30600.6 BTB/POZ domain-containing protein; Swiss-Prot: sp|Q8LEV3|Y2060_ARATH BTB/POZ domain-containing protein At2g30600; TrEMBL-Plants: tr|A0A072UEL5|A0A072UEL5_MEDTR BTB/POZ domain plant protein; Found in the gene: LotjaGi5g1v0000900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:152456..154478) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGAGAAGCTGCTGACGGTGCCGCCATTTGAGTGCGCGTGGCGAGAGGATTTGAAGTTCCGGGAAGCAGGTCGGGG TTGCGTGGCATTCGAAGCATTCGCCTGCAACGATGTGACGCTGGTTTTCCGGGAGAATGTGGGAAGCCAGGGCTACCATT ACAAGAGAGACAGCACTCCTCACTACACGATCATATTGGGGAGTCATCGAAATCGACGCCTCAAAATCGAGGTCAATGGG AAAACCGTCGTTGACGCCGCCGGGGTTGGACTCTGCTGCTCCACCTCGTTTCAGAGTTATTGGATCAGCATCTACGATGG CTTGATTAGTGTCGGTAACGGCAAATACCCTTTTCAAGATCTTGTTTTCCAGTGGTTGGATTCTCATCCCAATTGTAATG TTCAGTATATTGGACTCAGTAGCTGGGATAAGCATGTTAGGTATCGAAACGTTAATGTTCTTTCTCATCTGCCTCATGTT CAGGAGGAGATGGATTTAGATTATGACAAATGGGGTCTCAAAAATTTCCTTCAGACTTGGGACTTGTCTGACATGTTATT CATTGTTGGTAAAGACCAACGACCTGTTCCTGCTCACAAGACAATTTTATCTGCATCTGGAAACTTCTTTTCTTCTTCTT CCTCCTCATCTTCCTTTGTCATCACACTACCCTCGGTATCTTATCCGCTTCTCCATGCTCTGCTTCACTACATCTACACT GGCTGGACTCGGGTAACACTCTTTCCTTCTTCTATTTTCATACTTAAATTTCTAACTCATGATCACTTGATTTTGTCTAA CTCATTATCACCTGATTTATATTTAATTTGCTGCACTGTACTTGTTAAACTAGTCTATGAATTTATGATCTTAAGGTAAT TGGGTCTTTGTATCCTGTAGATTCCACCGGAACAACTTGGTTCTTTGAGGGCTTTAAGTCTACAGTTTGAAGTCATGCCA CTGGTGAAGCAATGTGAAGAGATTATGGAACGATTTAAGCTAGATAACAAGTTGTTTGACGGGGGCAAGGATGTGGAGTT AACATATCCATGTATCCGACCTCATTGTTCAACTTTGCCATCACTCCCACTCAGCATTCAGAGACTGAAGCAATTGAAAG TAACGGGCCAGTACAGTGATGTAAACATCTACATTGAGAGTTATGGCCTTGTTGCTCGAGCACATAAAATTGTTCTCAGT TTATGGAGTATCCCCTTTGCTAAGGTGAGCCAATTTCACTATCCTTTATCTCATGTAATGTGTATGCTGCCATGAAGTGT AGTTTTTTTGAATATTCGTAATTGCAAGATTTATGCACCTACACCCTCCGGTCACTATTATAAGCAAAAGTTAGCTTTTT AGTTCATTCAATAAATGATGTATGTAGTCATTAAAATGGTCACATACATCATTTATTGAATGAACCTACAAAACTAACTT TTGCTTATAATAGTGACCGGAGGGTGTATGCGCTTAGCTTTTATTTACATGTAGAGGATGTATTAGTTTTGATGAGCTTA ATTATGTGAGGGTTCAGTTCAAAAGTGATGACTGTATATCCAACAAAACCTTGAAAGGATATTTCTGAATCTCCCCAAAT ACACATTTGACCACGATAATAATTTAACTTTCTCTTTATGCAAATAATATTCATGCTATGTTTGGTAATAGTATGTTTAA TGTGGTGTTTATGTATTTTTGTATACTGTCCATGCGAGCTATCAATTAAAGAACTTGTTATTTTCCAGATGTTCACAAAT GGAATGAGTGAAAGCATGTCCTCTGACGTTACTTTACGAGATGTGCCACCAGAAGCTTTCAAGGCTATGCTTGACTTTTT ATATGATGGTCAACTGAATGAGAAATTCATAGATTCTGGTTCTTTGTTGCTCCAGCTCCTTTTATTGGCTGATCAATTTG GAGTGACTTTTCTCCACCAAGAATGTTGCAAAATGCTCTTAGAATGCCTCTCAGAGGTAGTTTGGTAAACTTAACTCACA ACAGTATCAGTACGTACTATTGA
CDS sequence (LotjaGi5g1v0000900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAGAAGCTGCTGACGGTGCCGCCATTTGAGTGCGCGTGGCGAGAGGATTTGAAGTTCCGGGAAGCAGGTCGGGG TTGCGTGGCATTCGAAGCATTCGCCTGCAACGATGTGACGCTGGTTTTCCGGGAGAATGTGGGAAGCCAGGGCTACCATT ACAAGAGAGACAGCACTCCTCACTACACGATCATATTGGGGAGTCATCGAAATCGACGCCTCAAAATCGAGGTCAATGGG AAAACCGTCGTTGACGCCGCCGGGGTTGGACTCTGCTGCTCCACCTCGTTTCAGAGTTATTGGATCAGCATCTACGATGG CTTGATTAGTGTCGGTAACGGCAAATACCCTTTTCAAGATCTTGTTTTCCAGTGGTTGGATTCTCATCCCAATTGTAATG TTCAGTATATTGGACTCAGTAGCTGGGATAAGCATGTTAGGTATCGAAACGTTAATGTTCTTTCTCATCTGCCTCATGTT CAGGAGGAGATGGATTTAGATTATGACAAATGGGGTCTCAAAAATTTCCTTCAGACTTGGGACTTGTCTGACATGTTATT CATTGTTGGTAAAGACCAACGACCTGTTCCTGCTCACAAGACAATTTTATCTGCATCTGGAAACTTCTTTTCTTCTTCTT CCTCCTCATCTTCCTTTGTCATCACACTACCCTCGGTATCTTATCCGCTTCTCCATGCTCTGCTTCACTACATCTACACT GGCTGGACTCGGATTCCACCGGAACAACTTGGTTCTTTGAGGGCTTTAAGTCTACAGTTTGAAGTCATGCCACTGGTGAA GCAATGTGAAGAGATTATGGAACGATTTAAGCTAGATAACAAGTTGTTTGACGGGGGCAAGGATGTGGAGTTAACATATC CATGTATCCGACCTCATTGTTCAACTTTGCCATCACTCCCACTCAGCATTCAGAGACTGAAGCAATTGAAAGTAACGGGC CAGTACAGTGATGTAAACATCTACATTGAGAGTTATGGCCTTGTTGCTCGAGCACATAAAATTGTTCTCAGTTTATGGAG TATCCCCTTTGCTAAGATGTTCACAAATGGAATGAGTGAAAGCATGTCCTCTGACGTTACTTTACGAGATGTGCCACCAG AAGCTTTCAAGGCTATGCTTGACTTTTTATATGATGGTCAACTGAATGAGAAATTCATAGATTCTGGTTCTTTGTTGCTC CAGCTCCTTTTATTGGCTGATCAATTTGGAGTGACTTTTCTCCACCAAGAATGTTGCAAAATGCTCTTAGAATGCCTCTC AGAGGTAGTTTGGTAA
Protein sequence (LotjaGi5g1v0000900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEKLLTVPPFECAWREDLKFREAGRGCVAFEAFACNDVTLVFRENVGSQGYHYKRDSTPHYTIILGSHRNRRLKIEVNG KTVVDAAGVGLCCSTSFQSYWISIYDGLISVGNGKYPFQDLVFQWLDSHPNCNVQYIGLSSWDKHVRYRNVNVLSHLPHV QEEMDLDYDKWGLKNFLQTWDLSDMLFIVGKDQRPVPAHKTILSASGNFFSSSSSSSSFVITLPSVSYPLLHALLHYIYT GWTRIPPEQLGSLRALSLQFEVMPLVKQCEEIMERFKLDNKLFDGGKDVELTYPCIRPHCSTLPSLPLSIQRLKQLKVTG QYSDVNIYIESYGLVARAHKIVLSLWSIPFAKMFTNGMSESMSSDVTLRDVPPEAFKAMLDFLYDGQLNEKFIDSGSLLL QLLLLADQFGVTFLHQECCKMLLECLSEVVW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 428 | 426 | 3.5E-199 | – | |
| Pfam | 51 | 146 | 96 | 1.5E-23 | ||
| Gene3D | 172 | 284 | 113 | 4.7E-15 | – | |
| SUPERFAMILY | 172 | 274 | 103 | 3.36E-18 | ||
| Pfam | 173 | 275 | 103 | 8.5E-15 | ||
| CDD | 182 | 260 | 79 | 8.19236E-9 | – | |
| ProSiteProfiles | 183 | 247 | 65 | 14.253 | ||
| SMART | 183 | 277 | 95 | 2.9E-14 | ||
| Gene3D | 304 | 430 | 127 | 2.8E-24 | – | |
| SUPERFAMILY | 310 | 423 | 114 | 9.87E-22 | ||
| Pfam | 314 | 424 | 111 | 1.8E-20 | ||
| CDD | 322 | 389 | 68 | 5.74E-17 | – | |
| ProSiteProfiles | 323 | 392 | 70 | 16.549 | ||
| SMART | 323 | 426 | 104 | 2.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0000900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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