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LotjaGi5g1v0001600.1

Overview

Field Value
Gene ID LotjaGi5g1v0001600
Transcript ID LotjaGi5g1v0001600.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description tRNA pseudouridine synthase Pus10, putative; TAIR: AT1G20410.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q3MIT2|PUS10_HUMAN Putative tRNA pseudouridine synthase Pus10; TrEMBL-Plants: tr|A0A151TFB1|A0A151TFB1_CAJCA Putative tRNA pseudouridine synthase Pus10; Found in the gene: LotjaGi5g1v0001600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:280300..288599) extracted from Lotus japonicus Gifu genome v1.2.

ATACGATAGTGTGCTTGAGTGAACTACAAAAAAAAAGATGTTATTTTAGTGGGGGGGTTTTAGCGGCGGTTTTATTAACC CCCGCACGCAGATTCCTTTAATTTGCATTATTTTACCTCAACTGGCGGAATATTTTTACCAACTCTGACTCACCACTCTC TCGTCGTTCTCCAGAGAGGAACCCTAACCAATTGAAGGTAAGTCACTCCGCGATGCGTGATTGATCTAGGGTCATTAGAT AGATATCTTTGCAATTTCTCTCTCTGCATTTGTGTGTGATTCTCATTGTTGTGTTGATTTGTGTTTGCGATTTCTCATCG TTGATCTAGTCTACTTGTAGGGTTGCATCTTTGTCCTCCTTGTGGGCTGGTCTCATCTTCTATCTGTTCTTATAGGACCA GTGTATCATTTAGGGATTTGTTAGGTTTTTCTGGTGGTTTTCTTTTGTATTGGGTTTGTAAATTGTTTGGATTTGAATGG TAAGGTTAAGCTCATTATTGTTCAATCATCAAACTGATTAAGCCCCATTAGGAATTCAACAATTTGGTGACAGTATATAT ACTTACGTGTTGTGGGAAAAAGGAATTGGAAAAAATGGCGGAGGAGGAGTTAGAAAAAGTGGTCGAGAGTTTGCCTTCCG ACGTCGTGAATGACTTGGCGTCCCTCGGGGTTCGTTATCTAACCTTCATTTTACTACCAATTCAATTCATTCATTTCCTT TCTTTCTAATCGCTGCTTCTTGTTTTGCAGTTATGTAACCGCTGCATCTTTCGGGCGTTGGGGGTTCAAGGCCACCGCAT CTATGCTTCTCCCTCTCTCTTCTTCCCTTCCATCCACCACCACCAACAACAACAACTCTGCACTCTCTGCTTAGGGATCC TCCAGTTCTCATTTTCTGATGACAGCGGAATCCTCCATAACAAGCAAAACGATGATGTCGCCCTTCTCATTGCTGATATG CTCAAACGACAACGCTATCACTTTGAATCCTTTTCCCTTGAAGTTTCCATCCCGCCTATTATCCTCCAAAACGACAACTC TCTCAGCTCATACATCAAAACCAAATACGGATCCCAACAAAATTTCCATGTTGGATGCATTTCTGCAAAGGATGCCTTGA AATTTTCTCTAGTACATCCTCTTCAAAATCTTCTGGTCAGTCAATACCAATTGCAATTGCTCATCAGAATCCAACTTACT CCATCTTTGATTGTACCCTCTTTTCATTTTTCTACAGAAATCAAGTTTGCAGGAATGTAAATCAAGTGCGAGCTCTTTCC GCATTCGTTTGACATACACTCACTCTAAAGCGTCCAAAGGGGCTGAGAACTGCTCTGATACTGCTCAGGGTTGCAAGAGA AGAAAAACAGGCATGTCTAACTTTATCACTGTGCCGTGTGTTTTATTTTCATTTATGTTTTTTTATTAAGAAAAGTGTGA TAATCTGACTTTGTTTTTCTGATTGCATACAGTATTAAACCTATGTACATGATTTTTTCGTGACAAACCTATTATGTTTC TATTAAAATGGTCTTCTTTTGCATAATTATTAAATCTTCACAAGAATCCATTTCTTGCTCTGATATTCTTTTTTATGATA ATGGGCCTTTGCGTAGCTGTACATCGTTATTGATGAACAATGTCTTTTACCAGATAATGCTGCCATAAATAAGAGTCCTT TGTTGGGTCCGTTGAAATTTTGGTTCTTTACAGTAAGTTCCGTATATTGTACTAGTTTTTCAGTCACGCTGCATGCTGTG CAATAAACCGATAATTGCATTAGTATTCCTTGTAGATTATATAATCCTCCTTCCATTGAATTTCATAATTTCTGTTCCTT GAGAGTTACTTTAGATCTTCTCCTTACTGTGTAAACCATAAAGCATATAATCTCATATCCCCTTATGAGTTTTCATCATA TTTGTTTTTCAGTTCATAGCTGATTTTTCAGCTAAACAATGTCATATCATATGTCCAGTACTTCAGTTGTTTCTCCTTTC TAACTATTCTTTTGCTGCAATGTACACTAAGATTGTGAGTAGGTCTGACAATGGTGTAGACACTGCCAATGATTTCACAG TTCCTTGCACTGACCATTTGGATTTTCTTTTTTAATAGGTGAATCCAATTTAGTTGGAGAAAAGCCTTCTAACAGTTCAC TAGAAAATGAAACCTCTGACTGCTGTAAATTCTTGCTAGAAACGGTAATTCTTGGTTCTCCTCCTTTTCTATGAATACAT GTCTTACGAGTTTAATTTAATTGACTTTCATGATGACCATGTTGTGAGAACGCTTTCTATCAACTTCATATATATTTTAA ACCCTTGTAGATTTGTATAGTGGGTTCACAATGGGAGTGCTTGCGTTCATAGTAAAAGCAAAATTCTGAGCTACATACTT TTTTTATTCATTCTCTTTATGATTTTATTTGATTCTATTGCTAACCTTATTTCCCTGCTTTTTAGGTAAATGAGCCTTGC CATTTTACTTACACTTGTTACAGGACACCTTTTTATTTTGGTGGAAGGTACCTGAAGGTAATGGATTTGTTCTCCCATCT TTCCTATTTGAATTAAGTACGCATATTGCAACTCTTGATTCTATTATCACATCACAGGTCAAGTCCTTGCCTCCTATGAG CCTCTCAGATGGCATCAACATTGGTGTTTTTTTCACCTTGCTATGTTCTAAAACATAAATGTTTCGTTTCTTTTTCCAAC AGCTGCACTCATATTTTACATATTCCTATGTGCTAATATGTCATGATATGCATATTTGACATGCATAGTCATTTCTCTGT GCTAATATGTCATGATATGCATCTTTGAAATATACAGTTGAAATTTATTGTAAATTGTAATTTTACTAATTGTCACAAAA AGATATCCTTCATATATGGAATATAATTTCCTTTATCATATGTCTATGACTTGCAAAGTAATGATCGACCAAGATTAATC TTAGCTTGTGCAACTTTTAATCTATGTTGTTACTTTCATGGCAGTATTCACGGAATGTGAGTCAAACACGCTGGATCATT GATGATGAAAGAATGGGGGAAGCATCAGTTGAGGTATTGTTTACTCTTGCAAATAGCTATTGTCACCTTATATTCCCTTT TTATGCCAATTGTGGAAGGTGACAATAATGTGTAATCACGTTGTAGGAAATTATAGGTGGAAACATCCTCCAAGCATGCC AAGCTGATAGTTTCAAGTTTCATGCTGCTGGTAGAGAAGACATTGATGTACTAAAAATTCATGGTTTTTATTTATTTTTT AAGCTCATTGGTTAATGAACTTATGTGATACATAACTATTCTTCTAGGTCCGAATGTTGGGCCCAGGAAGGCCATTTCTT GTTGAGGTGCAAAACTCTCGATATGTCCCATCGGAACTGTCTGTAGAAGATATAGAGAAACTGATTAATAACATGGAGAA TAAATTGGTAATGTTGAAGCTGAACTGGTGATGTTTCTATGGTAGTTTTTTACTACACGATGAGTAAATACGTAGTATCA TATGTTCATGTAGGTTAGAGTGAAAAATCTGAAACTCGTTGGTAGTCAAGGCTGGGAACTTATGCGTGAAGGTGAAGCAG AGAAGCAGGTCTGGCATTCTCTTCTTCTTAGTTGGTTAATTTATTTCATAGTTCATGGTTTGCAACTCTGCTCTTTTCAT TGTTTTATCTGAATCAATCTTAATGTTACACTCTTCAAATTGTCTAGAAACAATACACTGCTTTAGTGTGGATTTCTCGT CCTCTGAAGGATGAAGATTTTCAATGCGTGTCTTCACTAAACGATTTGGTGAGTGTTTATGTAGTATATTACCTGTTATC AAACTTGTATATTGTAATTTTTTTTTACATATACTTTGAGAACTCATGTTTTTCGTCTTTGCATCATTGATTTAGGCTAA GCAGTGCTCAAAGATGTGTCTGTTCCTGATTGTAATGTTTTTGTCGTTAAGCCTGTGATTTATCCTTTTCATATGTATAA CCGTTGAATCCTTTTGTGTGCATTGCTCATATCGATTTGCCATTTCATTGTATTAGATGTATGTACTTTTATGGTTTTAT TTTTCTCAACAAGTCTATAAAATGGGAAATTTTACCATAGTAAAAGACGACTATCACAAGGGCAGCTAAAATGTGCTTCT AAAGTAAAATGATCAATAATTAAAGTATGTCTCATTGCTGTTCTTAGTCAATTTGATTGATGTTTTCTGATGAATCAAGT CATCAACTAAGCTGAAATCAAAATTGTGTTTGTCCAGAAGGCTAATAAAAATAATAGGACCCATGTAACAAATTCAAACA TTAGATTGAAATCCATTGTTTAGTAAAAATGCAGAGACTGATTATCAAATGAGAAATGAATCATGCTCTTTGGTTCCATA TTTTCAACTACTTTGATCTAGCTTGAAGCCTTGAACATGGTTCATATTACCTTGGTTCATACTTGTTGAATATCTGTTTA GATTTAGTTTACTATTAGTATTATCTCATTGAGATATAGTTTAGATTTGTTTCTCTATTTTAGATTAGTATCTATTTAAA TAGAGATAATATCTATTTAAATAGAGATAATATCTATTTAAATAGAGATAGGTTTAGATAGATTTAGTTTCTTTTTATCT CTTTGTTAGTCTATATATATTGTAGTTTTCAGTCAAGTATTAATCAATGAAAATACACAATAATTATTTTATCAAATTCA AGTTGGTATCAGAGCGAGTTTCGATCCTACCGCTGTGAGGGGCTCCTCCCCCGTGAGCCCCCTCATGGTGACCTTCCAAA TCTCTTTGGATTATTTTCACTCGTCCTGTGCTTCCGCGCTTGTTTGTTCTAGCCTTTTCTTACGGCCTCGTTTCTTTCTG ATTATGGTCCCCTTTGTCTTGGAACCCTATTGACCGTTGTTTCTTAATACTTAAAACAACCGCGCCTTCTTCTTCGGCGC GTGAAGGTAACGCACAAACCTGAACTCGACGCGACGACCACATACATGTTCGTCCGTTGTAGTATAGTTGGTCAGGATAT TTGGCTCTCCCTCCTGGTTCTGTTCCAGATGTTGTTTTCTCCAGATTTTCCTTCCTTTAATGCAGTTGCGTGATTGGAAG AAATTGTGGGAATTGATTCAACAATTGTTTACTCAAGAATTCTTGATTGGAATGACATAATAATTCTTCACTGCCAGCGA GAGTATTGGTTACATGAAGTGGAAATATGGAATGCCAATGCGTTGGGATGGTGATATTGGAAGTTTCTGATGATGCCAGA ATGAAGCAGTACCATGTGGCTCTTTGGTCCAATCCAGTTCTCAATTAGTGTGTTGGGTTGTTCTAGTTTCTTGTTTTTGG TTTCTTGGTTTTGGTTGGCACAGTGTGGTTTTGGAGTTGGAAAAGATTTTTGCTCTCTATTAAAGTGGAGAATTGGTTTT GCATTGTGTGGTTTGTTGGTGTATAAATTTTGGACTATTTTTGGGAATATCTCTCTCCGGCAGCAGCTGCTTCTCAAGTT AATTATATTTGTTACAAGCTATGCATATGACATATATGCTATAGCTTGAGGGGAAGTGTTATTAGAGACTACGGCCAGCC ACCACCGTCGGATTTCAAGCCACGCGCCCTCACGTGCCTCCCATCTCTCTGCGTGTGAAGTCCACGCGCCGCTCTCTCCG CTGCTTTGTTCTAGCTGGTCCTCTTTGTGTATCAGCCAGGTTTGGTTTTAAGGATCCTTCCTCTGTTTTGACGTGTGTTG TGCCGTCACAGTTGTGATCATCCGGTCGTCCTCTCCCTGTTTGGTTTGTGGGTTTGCTATTTTGACCCTGTTTGGACGTT TCTCGTGCCATCTCTCATTGTTGACCAAGTTTGGTTTGGTTTGGTTTGGTTTGGTTTAGTTTGTTTTAGTTTGGTTTGGT TTGGTTTAGAGTTTTAACTCCGTTTTGACGCTCAGGTTCCGCATTGGATTTTGAGACTTGAGTTGTTGTTTGCGTCTCAT TGATCGAGATGCTCTTATAATACCGCTCCTGGCTGACTTTATGCAATTTGGTTTTGAAGGTGACAATGTCACCTTCGTTT GTTTCGTCTCGATTGTTTGGTTTTCTAGTTGTTTGGTTTTCTGGTTTAGGGCTTCAGCTGCGAGTTGCGCTGGCCCACTC TCTAATGTTTGAGAGTTGTCTGTGTCAAAGTTGACACCATTGTTTGTCTTAGAAGCCATCAATCGATCGACCTCAAGTAT GTTTTATTTCTGTGTGGTTGTTGTTGGTGAGTTGTTGCTTCAGCCTTGTTTTGTTTTCGGGCGTATTGTTGCTGGTTTTT TTCGCCCTTGTTTGCTGGCTCAGCTACCCTACGACACTCCAGAAGAATTGGTTTTTGTCTTGCATCAATTTCAGCCAGAT CAAGTATGAGAAGTTGTCTTTTGCCTGCCCATGAATTTAGCAGAAGTTCAAAAGATTATTCAATTTGAAGTATGAGAAGT TGTCTTTTGCTGCCATGGATTTACTAGAAGTTTGAAAAGTTATTCAATTCAGAGATTCGCCAAGACTGTCATTATTAAGG GATATCTATTAAGATAATTTTTTTCTTGGGTTCGATTTGTTACAAGCTTAAAGCTAAGTAAGCTTTAGCTTGAGGGGGAG TGTTGAATATCTGTTTAGATTTAGTTTACTATTAGTATTATCTCATTGAGATATAGTTTAGATTTGTTTCTCTATTTTAG ATTAGTATCTATTTAAATAGAGATAATATCTATTTAAATAGAGATAATATCTATTTAAATAGAGATAGGTTTAGATAGAT TTAGTTTCTTTTTATCTCTTTGTTAGTCTATATATATTGTAGTTTTCAGTCAAGTATTAATCAATGAAAATACACAATAA TTATTTTATCAAATTCAAGTATACTTACAAAAAATTGGGCTAGTTTCTACTGGGAATTCTGCATATAATTTTTTTGTTTT GTTTTAACCTATAACTGTGGAAAGCACAACTTTATCTTTTGTGCAGAAAGTTTTGCAGAGGACCCCAATAAGGGTGCTAC ACCGTCGTAGTCCTTTGGAGCGTGAAAAGATTATACATTGGTATGACGCTTCTATATATTGATAGTTATATGCCATCCTC ACTGTCATGGCCACATTCAGAGTAGTAATGAAATTTTATCATCTCTTTTGTTTCTCAAAACTTAGGATGAAAATGGAGAC AGTTGCTGGAAGTTCCCAATATTTTCTTTTGCATCTATGTACACAGGTATTGTTTTATGTAAATGAATTTTCAGTGACTG GTTTAGTTCCATACACCATTGTCTTTTACATTTTGATTGACAGTCAACAAATTTGGTAGAAAATGTCAGGAAGGTTTAAT ACTCGTTCTTTATTTGGTTGAAAATAATTATTGCATAGGGCAAGTGATTGACTTCCATTTCAACTTGAGTTTTGAGTTGT ATAAATCAGATGATTTATTGGTAAAACATCTAATATGATCTACAGGCTGGGACCTACATCAAAGAATTCGTTCATGGGGA TCTTGGACGCACACATCCTAGGTATGACAGACAATGCTTACGACTTAGTTCTGGGAATAGATAAAGGATGTATTCCCTCC ATCCATTTCTATGCCTTACACATATAAATGCTACTGTCTTGATCACATGCCATATTTGCCTTACATGACTTTGGTTTTGC AGCATTGGATCAATTTTGGGTTGTAGAGCTGAGATTTTGCAACTTGATGTTACAGACATCAAAATGGAATGTTTCCTTAC TTAATAAGGTTATCTGATAAATTGGTTTTAAATCATAGGTTTTAATTCTTAGTTGACTGAAATTTGACTTTAAACAGCTC TTTGATGAAATATACTGCCACATCTTCAACTTGAGCTATGTTTTTCTAGTTTCTAAAAGATATTCCTTGAACTGTTTTTT TTTACATTCATTTGTACACTGGTAAGTAGGGGTGTAAGCGTGTACAGTCCGATCCGCGAATCCGATCAAACTGATCCGAT CTGAACACATTATGGTGGGTTGGATTGGACCATCGGGTCAGTTCGGATTTTTTTTCGCTGCATCCGATCACACCATCGGT TCGGGTATCAGATTTAGGGATTGAAAAACCGATCAATCCGAACCAACCCAATGAATTGATAATTATTATTTACACACTCC AACCCATTACATTGCTTATTTATGTTTATATTGAAGATGTTGGTTTTATTTGAATTATATGGATTATGTCATTATCGAAT GTTTGTTCTTTAGAAATGTTGGATTTTTCTATATTTATATAATTTTTCACAGTTTTAGAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0001600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGAGGAGGAGTTAGAAAAAGTGGTCGAGAGTTTGCCTTCCGACGTCGTGAATGACTTGGCGTCCCTCGGGTTATG TAACCGCTGCATCTTTCGGGCGTTGGGGGTTCAAGGCCACCGCATCTATGCTTCTCCCTCTCTCTTCTTCCCTTCCATCC ACCACCACCAACAACAACAACTCTGCACTCTCTGCTTAGGGATCCTCCAGTTCTCATTTTCTGATGACAGCGGAATCCTC CATAACAAGCAAAACGATGATGTCGCCCTTCTCATTGCTGATATGCTCAAACGACAACGCTATCACTTTGAATCCTTTTC CCTTGAAGTTTCCATCCCGCCTATTATCCTCCAAAACGACAACTCTCTCAGCTCATACATCAAAACCAAATACGGATCCC AACAAAATTTCCATGTTGGATGCATTTCTGCAAAGGATGCCTTGAAATTTTCTCTAGTACATCCTCTTCAAAATCTTCTG AAATCAAGTTTGCAGGAATGTAAATCAAGTGCGAGCTCTTTCCGCATTCGTTTGACATACACTCACTCTAAAGCGTCCAA AGGGGCTGAGAACTGCTCTGATACTGCTCAGGGTTGCAAGAGAAGAAAAACAGGTGAATCCAATTTAGTTGGAGAAAAGC CTTCTAACAGTTCACTAGAAAATGAAACCTCTGACTGCTGTAAATTCTTGCTAGAAACGGTAAATGAGCCTTGCCATTTT ACTTACACTTGTTACAGGACACCTTTTTATTTTGGTGGAAGGTACCTGAAGTATTCACGGAATGTGAGTCAAACACGCTG GATCATTGATGATGAAAGAATGGGGGAAGCATCAGTTGAGGAAATTATAGGTGGAAACATCCTCCAAGCATGCCAAGCTG ATAGTTTCAAGTTTCATGCTGCTGGTAGAGAAGACATTGATGTCCGAATGTTGGGCCCAGGAAGGCCATTTCTTGTTGAG GTGCAAAACTCTCGATATGTCCCATCGGAACTGTCTGTAGAAGATATAGAGAAACTGATTAATAACATGGAGAATAAATT GGTTAGAGTGAAAAATCTGAAACTCGTTGGTAGTCAAGGCTGGGAACTTATGCGTGAAGGTGAAGCAGAGAAGCAGAAAC AATACACTGCTTTAGTGTGGATTTCTCGTCCTCTGAAGGATGAAGATTTTCAATGCGTGTCTTCACTAAACGATTTGAAA GTTTTGCAGAGGACCCCAATAAGGGTGCTACACCGTCGTAGTCCTTTGGAGCGTGAAAAGATTATACATTGGATGAAAAT GGAGACAGTTGCTGGAAGTTCCCAATATTTTCTTTTGCATCTATGTACACAGGCTGGGACCTACATCAAAGAATTCGTTC ATGGGGATCTTGGACGCACACATCCTAGCATTGGATCAATTTTGGGTTGTAGAGCTGAGATTTTGCAACTTGATGTTACA GACATCAAAATGGAATGTTTCCTTACTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0001600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEEELEKVVESLPSDVVNDLASLGLCNRCIFRALGVQGHRIYASPSLFFPSIHHHQQQQLCTLCLGILQFSFSDDSGIL HNKQNDDVALLIADMLKRQRYHFESFSLEVSIPPIILQNDNSLSSYIKTKYGSQQNFHVGCISAKDALKFSLVHPLQNLL KSSLQECKSSASSFRIRLTYTHSKASKGAENCSDTAQGCKRRKTGESNLVGEKPSNSSLENETSDCCKFLLETVNEPCHF TYTCYRTPFYFGGRYLKYSRNVSQTRWIIDDERMGEASVEEIIGGNILQACQADSFKFHAAGREDIDVRMLGPGRPFLVE VQNSRYVPSELSVEDIEKLINNMENKLVRVKNLKLVGSQGWELMREGEAEKQKQYTALVWISRPLKDEDFQCVSSLNDLK VLQRTPIRVLHRRSPLEREKIIHWMKMETVAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSIGSILGCRAEILQLDVT DIKMECFLT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21568
54 486 433 2.0E-154
IPR039894
Gene3D
G3DSA:3.30.70.2510
249 372 124 8.2E-40 –
Coils
Coil
333 356 24 - –
SUPERFAMILY
SSF55120
369 483 115 6.12E-16
IPR020103
Gene3D
G3DSA:3.30.70.3190
373 483 111 2.4E-40 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0001600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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