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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0003600 |
| Transcript ID | LotjaGi5g1v0003600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein; TAIR: AT1G20180.1 transmembrane protein (DUF677); Swiss-Prot: sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180; TrEMBL-Plants: tr|I1MC16|I1MC16_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0003600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1006042..1007691) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAAGAAAGAAACAAAAAAAAAAAATCAGATATCATTGTCTTCAACCTTTTCCATGAGATCCATGACATGCACCGGGT GGTTTTGTTCTCTGAGAAGACCAGGCGAGTTTATTTCTACAACTCTTCTCCTAACTATGTGTTTAGATACTAATTGAATC CATATGAAAAGTTGTTTTCACTTATTTTAATTTAATAGATGATGAATAGCATTCATTAATTTTGTTTTGTGCAAATAAAC AAGGTGCAGGTAGATCACAGAAAGAATGTGACGTGGAAAGGAAGCTAAACGTGAACGAAGAATATCGTGAAGCATTCAGA ACAAAGTCTTACATCGAAATATGCAACAAAGCACAAGGCCAGTTAGGGAATACAAGTACCAAAATACCCTCTTCCTCAAC ACCTTCTTCTTCAGTTCCTTTATGCACGACGCATCTCACTGAGTTTTTGCTTGAACCTCGACAAGAGATTATAACAAACA TGAAGGTGCACCGTCTTGTGGTGGACTACTTCGAAGCAAGCTTAGAAGCATGTCGTTGTTGTGACACCATTCTTGAAGCA ATCCAATCGACGCGACAAGCTTATCGAAGTCTCACACGTGTTGTTAAGCTAAGCAAAGGAGCCCACCTCGATTGCAAAGC CCAGAAGAATGATGATCATGATATTGATATTGATATCTATAAAGATATTGCTTCCTTTGCCTTGCAAAACAATCCTCTGT CCAACGTTGTTAGCGCCGTGCAGTTCCGTGAAATCCGTGACGGACACATGGCGCTCATGCATAGGCTGATATTGAAAAGA GGGAGAATCAGAAGAAGGTTAAATGTGAAGAGAGTTGGGAAAAACGTTGGAGGAATCGTTCTTGTGACATCACATGGCGT TGTTCTGATTATTCTCTTAGTATTTTGTTTCCACAGCGTGGTTGGGTTGGTGGTCGCACCGAGCATCGTGTGTGGATTAG TTGGTTTGTTCATGAAGAGAATTAGTAAAGCACGTGGTAATAATGAAAAAGTAATTACCACGCGCTCTTCTAATTCTAAT TCTGATGAGAGGTTGTGCGAGCAACTTGATGTTGCTGCGAAAGGGGTTTATATTGTGATCAATGATTTGGACACTATGAG CAGGATGGTGAAGAGGTTGCATGATGAGGTGGAGCATAGGAAAACAGTTGCTGGTGTTTGTGTGAGGAATAATGGGAAGT GGGAGATTTTGAAGCGGGTGGTGTGTGAGTTTCGTGACCGGGAGTCTAGCTTTTTGGAGCAGCTGGGAGAGCTTGAGGAA CATGTTTACTTGTGCTTTCTCACCATCAACAGGTCCAGGAGGCTCGTTATGCAAGAAATTACGGACACGAAACTCTAAGA GTTATTCAAGTTTTTAATTTTCCTTCCTAGAAAATCTTTCTCGGGCGGGCATGAGTTAAGTTTCATGTGAAGCTTCTGAG AAGTCCAGGGTGGATGGCTTAATTAATTTTCTTCTTTCTATATATGGCTAGCTAGGTGCTTTTGATGAGTGCTCATTATT TCAAATTAAATTGTTTCTGGTTCTTCAATTTTCATACTGTAAAAAGAGATAGGATAAAGTACAAATTTTTTTTTTATTTT TTTTGGTACATTAGAAAGATAAATTACACCCGTCAGGAATTAAATCATGG
CDS sequence (LotjaGi5g1v0003600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATCCATGACATGCACCGGGTGGTTTTGTTCTCTGAGAAGACCAGGTAGATCACAGAAAGAATGTGACGTGGAAAG GAAGCTAAACGTGAACGAAGAATATCGTGAAGCATTCAGAACAAAGTCTTACATCGAAATATGCAACAAAGCACAAGGCC AGTTAGGGAATACAAGTACCAAAATACCCTCTTCCTCAACACCTTCTTCTTCAGTTCCTTTATGCACGACGCATCTCACT GAGTTTTTGCTTGAACCTCGACAAGAGATTATAACAAACATGAAGGTGCACCGTCTTGTGGTGGACTACTTCGAAGCAAG CTTAGAAGCATGTCGTTGTTGTGACACCATTCTTGAAGCAATCCAATCGACGCGACAAGCTTATCGAAGTCTCACACGTG TTGTTAAGCTAAGCAAAGGAGCCCACCTCGATTGCAAAGCCCAGAAGAATGATGATCATGATATTGATATTGATATCTAT AAAGATATTGCTTCCTTTGCCTTGCAAAACAATCCTCTGTCCAACGTTGTTAGCGCCGTGCAGTTCCGTGAAATCCGTGA CGGACACATGGCGCTCATGCATAGGCTGATATTGAAAAGAGGGAGAATCAGAAGAAGGTTAAATGTGAAGAGAGTTGGGA AAAACGTTGGAGGAATCGTTCTTGTGACATCACATGGCGTTGTTCTGATTATTCTCTTAGTATTTTGTTTCCACAGCGTG GTTGGGTTGGTGGTCGCACCGAGCATCGTGTGTGGATTAGTTGGTTTGTTCATGAAGAGAATTAGTAAAGCACGTGGTAA TAATGAAAAAGTAATTACCACGCGCTCTTCTAATTCTAATTCTGATGAGAGGTTGTGCGAGCAACTTGATGTTGCTGCGA AAGGGGTTTATATTGTGATCAATGATTTGGACACTATGAGCAGGATGGTGAAGAGGTTGCATGATGAGGTGGAGCATAGG AAAACAGTTGCTGGTGTTTGTGTGAGGAATAATGGGAAGTGGGAGATTTTGAAGCGGGTGGTGTGTGAGTTTCGTGACCG GGAGTCTAGCTTTTTGGAGCAGCTGGGAGAGCTTGAGGAACATGTTTACTTGTGCTTTCTCACCATCAACAGGTCCAGGA GGCTCGTTATGCAAGAAATTACGGACACGAAACTCTAA
Protein sequence (LotjaGi5g1v0003600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSMTCTGWFCSLRRPGRSQKECDVERKLNVNEEYREAFRTKSYIEICNKAQGQLGNTSTKIPSSSTPSSSVPLCTTHLT EFLLEPRQEIITNMKVHRLVVDYFEASLEACRCCDTILEAIQSTRQAYRSLTRVVKLSKGAHLDCKAQKNDDHDIDIDIY KDIASFALQNNPLSNVVSAVQFREIRDGHMALMHRLILKRGRIRRRLNVKRVGKNVGGIVLVTSHGVVLIILLVFCFHSV VGLVVAPSIVCGLVGLFMKRISKARGNNEKVITTRSSNSNSDERLCEQLDVAAKGVYIVINDLDTMSRMVKRLHDEVEHR KTVAGVCVRNNGKWEILKRVVCEFRDRESSFLEQLGELEEHVYLCFLTINRSRRLVMQEITDTKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 211 | 211 | - | – | |
| PANTHER | 13 | 382 | 370 | 7.2E-137 | ||
| PANTHER | 13 | 382 | 370 | 7.2E-137 | – | |
| Pfam | 80 | 380 | 301 | 1.4E-14 | ||
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 212 | 234 | 23 | - | – | |
| Phobius | 235 | 239 | 5 | - | – | |
| TMHMM | 239 | 258 | 20 | - | – | |
| Phobius | 240 | 258 | 19 | - | – | |
| Phobius | 259 | 385 | 127 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0003600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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