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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0003800 |
| Transcript ID | LotjaGi5g1v0003800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | La-related; TAIR: AT4G35890.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94K80|LRP1C_ARATH La-related protein 1C; TrEMBL-Plants: tr|I1MC18|I1MC18_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0003800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1023688..1028705) extracted from Lotus japonicus Gifu genome v1.2.
GCTTGCCAGGCTTCACAGGACGGATATGCTATGCAGATTTGGAAGTTTGGATCTTCTTTTATCATTTATTTTATGTGTCA AGACTTACTTAGATATCTCGCGTCTTGGTTTTAAAAGTGTAACAAAAATGATCAAAATCAAATTGCAAAGACCTATTTCC ATTTTTTAAAAGAAAAACAAATGAAATCCAAAATTCATTGTGAGAGAGAAGAAATAATAAGTACTAGGTTTATGTCACTT GGTTTGGGTTAGCTGAGTGGTAAAAGGGGGAGAAATAAATAAACAGGTTAACAAAACAGTAACAGAAAGGGAGGAGGGAG AGATCGCAGTTTTTGTGCTGGGAGGAGTCGTTTCTTCCCAAACTAAGATCCGTGTTGTACCCAGAGAAACCCCAAATTCA TATTCATAATTATTATTCCATGTTTTTAATTTACTGATTTCTTTATATTTATTTTTTCATGTCTTTGGTTCTATACTGAT CCTTCTCTGCAGTTTGTTTCTCACTAGAAAGTAGAAACCCTAATTATCAATGATTACCGCTGCTAAATCTTCCTCCAATC ATCACTCGCCAACCACTGCTCCGTCACCGGTGCCGTCTGGGCCGCGAAAAAACCTTCCCTCCCCGTGGGCTCAGGTCGTT CGCGGCGGCGACACGGACTTCACTGCCGCCGTCGGCATTCATGAATCGCCACCATCGTCATCGTCCTCTTCCTCGTCCCT TGCTACCGGCGCTGCTGAACAAGCGCCTGCCGCCTCTGAACCAGCGCAGTCATCATCCCCGAAGGTGGTTCCTGCCTCGC CGCCGCCAGTGCATAATTCTAATACCATCGCTGTTGTAGATAGCTCTGATACTGGTGATGGCAATGCGGTTTGTTCTAAG AAGCCAGTGTGGAACAAGCCCTCAAATGGCGTCGTTGAGGTCGGTCCTGTGATGGGTGCTGAATCATGGCCAGCTTTGTC TAAACCCACCAAAGCTTCTGGTAAATTGCCAGCTGAATCCTCTTCCAAGACTGCTGTTGATGGATCACTCTCCACTTCCA TGGTTTGGTTCAGATACATTCCCTAATTATCTTATTAGTGTTTTTATTTTAATTTTTAGAGGTAGATTTTCTGTTCAGTT AATATTTTTTCATAATTAACTAGAAAGTATGAAAGGGTCGTAAGATGAGTCCCCTGTTATCTGCTATTACTCAATCCAGG AACATTGTAGTCAGTGTGCTATTGCAAAATGTGTTTCTGTAGACTTGGGTTTACGTTAAATCCCGTTCATTGTAACATAT TATGGAGTGTGTTTATGATTAAATTACATATATGAATATGATATATGACAATATTATGCTATCCAGTTTGTGCATAAAGT GGTATTTATTTATGTCCAGCATTATGCAATTATCGAACAGGGGAGATCATTATAAGGAAGGATTTGTATTTTTTTTTTAA TAAGCGGGTGAATCTTATCTCGTTGTTTGACTTTTGCGTTATTTTGTAGGGGCCTCGAACTTTGCACTCCCCTCAGAAAC AAGGGGCGAGCAATATAAAACCTAATTCTGCCACAAATCACAATGTGCCTAATAGACAAAGACCGATGAGGCGGACGGGG GGCAGCAACATTGGATCTGGCCCTGATCAGAGCAGCTACTCCAACCCTCCCCCACCACCGCCACCACCTCCATTTCCTGT ATATCAGCTCCCTCCAGTTAGTTATGCTAATATGGTACCAAGTATCCCTGACCCTTCTCGGCGAGATCATTACCGGAACA ATAACTGGGATGCAAGACCATTAGTTGGGGGTTTTGTTCCAAGGATGAATGAACAGCGGGGATCCTCTCGCAGGGGTAAT TTTGGGGCCCATCCACGAGGGGACAGTTCCTATCATAATAATCATGGTGGCAGGCGTGATCAGGATCGTGAAAGTTATGT GAATCCTAGAGATGCTCATGTACCTCAGCCAAGGATGCCTCCAAGAGGATTATTAAGGCACCCACCACCTAGTACTGCTG CATTTGGGGGTCCTCAGCCCATTGCGCCTTTTCCAAATCCCATTGGTTTTCCTGGTTAGTTTATTTCTCTTTTTCCCCAA TTGTGTTTCTATGAAATAAAATATAATTAATGCTTCTTCTTTTCGATTTTTAGAGTTTTATTACTTTCCAGCAGTGCCAT TGGAGCACTTTAGGGGTATGCCATTCTTCTCCCAAAACCCTTCTCCTGCAACATTTTTCCCAGCTTCAGAACCTCCTCTT CCCAATATGATAGTCAAGCAAATTGATTATTATTTTAGGTAAACTTAATTTGTTGCATGTTATTTTGTTAGTTAACGAAT CTTTGACAATTGAATTCGCTATTTATTCCTTATTTGTTTTTTGACAGTGATCTTAATTTAGTGAAAGATGAGTATTTAAG GTCCAACATGGATGAACAGGGTTGGGTTCCAATTACGTTGATAGCAAACTTTCCTCGGGTGAGTTAATTGTTCTTTGATT AAGCAAACTTTTCTGTTGTACCTTTGATTATGTTATACTTTTCTGTTGTACCTTTGATTATGTTATACTTCTTTGTTGCT TTTATTTAATCGTGGATTGTGCTAATCACTTACTTGCAGTGCATATATATAATATATAGATAGTTGCTATTGAGGATTTT CATTTACATAGCTGACCCTAAAGCTTATGTAGAAGTAGTTATAGTCAAGATTGTCAAATTTGAGATTTTAAGAAAAGTCC GGAGTGTCCAAAAACTCGACTAGTAAACTCATAAAAGTTTAAATCATGCAAAAACAATATTTAGAAAACCACAATAATAG ATCACAGTATTTTACCATGATAGATTGTTGTAAATCTCATGCTTAAAGCTTTGAAATTTGTTGTTTAACTTGCAACACTT TTCTAATCATGCTGTGCAAAATTTCGGTTTTTAAGTTTTTTCATTATCCATTGCTTCAGTGAGATTTAGACAGTGTTTAA GATTGTTCCGCGTCAAAGTCTTTTTTTTCAGGATTACTTTGTTCTTGTAGTTTTTCTCCTCACTGTCACAATTTCATTGT CATTGACCTTGAAATCTTCATATTCAATATATGGATTGCTGACACTATGGATTGCAGAAAGCCTGAAAGGAACTGGTCCA GAATGGTTATGTGCTTGAGTGAGCTTTAGATATTGTGTTTGTTTTGCAATTTATTCGTGGAGATCTTTTACACTCCTTGT GATGTTCAATTCAAATGCATTGGACTTGTGCTATAAGAATTTATGCTACTTTGAACTTGCAACACCACATGGATAGTCTA GTGCAACTATTCCCAGTGATGTGATGATGGCTGTAGCAAAATAGTGAGCACAGTTGTTACAAACATGCACACACAATATT AATGTTACTAGAACTCTGGCTTGACTGCACTTTTTTTAGTAGAACTGAAATAATGTAGTTATTATTCTTCTACTCCCATT CAAAACATCATGGTATGTGTACACCATTATATCATTGTTTCAATGCGCAACTGTATTTATGATTTAGTCTCTACTTGTCT ATTTGTGTGCTTAACCAAACCTCCCCGCACCTCACCATGCATGCACCAAAAAAAATATGGTACCTTTGATCAACATCTAA TTTATTGCCAATGCTCCGCATAAAATAGTTATAAGAGTACACTATGAGTTGTAAAGTGTTATTGACCATTTTCTACTGAT TTTGCTCTTGTAATCCATCAATAGTCAGATTTTTCTATAGGGATGACATTTGTATATTTATAACTCCTGAGCACCTAAGT TTGTTGTTTTCTTTATAATATCTTTTTGCAGGTTAGGAGTTTGACAAGCAACATCCAGTTAATATTGGATTCGTTAAGAA CTTCTACTGTTGTGGAAGTGCAGGTTAGTTCTCATATGACAGTATTTTTCATGGATCAATCTTTCATATCTTACACTTCG CACGCTTTCTGTACATGTCTTACACTTCGCACGCTTTCTGTACATGAATCACATCACATCAGTTCCATGGCATGTTGTGA AATAGCAATGATACATTGGCTAAGTTTGAAGTCTGAAAACTAATGCTAATATTTCTTACTTTGCTGCTGGCCGCAGGGTG ACCTGTTGAGGAGGCGTAATGACTGGATGAGATGGCTTCCCTCTGCTCAGCTTCGGGCTGATTCTAGTTCTTTAGCTCCG GGTAGATCAAGATATGCTAACTTGGAAGCTGATTTCCAAACTCTCTCCGTGGAAGAAACAACTAATGATGAAGGTCCAAA GACTTTTAGTCAGTCTCAACTCCCAAATGGCAGTGATGCTGCAGGGAACAACAACTAAAACTCTACTGACATAATCTTCT CCCTGAATTTACTTAGCCTTGTCTAGTGTTCAGTATTTGGCCCTGCGTGATTCATAATTTTGAGAGTTTTTCTTCCCTCT TTTTTGGAGGTGATGGGGTGATGGGAATAGAGGCTGTGTGGAAGTTCCTTCTTTCTACAGTCATGAGCTCAATTTTGATA GTAATTGAGTCAAGTAGTGCAAACAAATAAGAATTTTTTGCTATTATTTTGGTCTACAAATAGGAGAAATTAACAACAAA ATTTCGGAATTTTGGTTGAAATGGATTTTTTTGAGATTATTGGTTTGTATAGCTTATTTTTTTGCTCTTGGTGAATTTTC TTTTGATGGTTTGTGGTGGCATGTGGTTGTTATTGAATAATTGGCTATATATAAAGGTTCTAGGTTATATTATTGATAGT GTTGTTTCTACTTTTGACCTTGTGTTTGGAGTACTCCTGGTCTCAGTTCTGTGCAGGCAACAATTCAAAAAAAAAAATTG CAAATTCAAGGTTTGTCAGCAACCATGAGAACATGCAAGAAAACTTGCAAAATTCAAGGTACCCATCCACGTCAGATCGT ATACGTCCAAAACTACCCCATTTTGCTACATAAAATTTTTTTTCACCCCTTTTTGCTAATTAATTTTTTTAACATTATTT AGAAAAAAACCTAAATATGTTTGAGGTCCCTTCATTTTAGGGCACTTTTGGTTTAGGC
CDS sequence (LotjaGi5g1v0003800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTACCGCTGCTAAATCTTCCTCCAATCATCACTCGCCAACCACTGCTCCGTCACCGGTGCCGTCTGGGCCGCGAAA AAACCTTCCCTCCCCGTGGGCTCAGGTCGTTCGCGGCGGCGACACGGACTTCACTGCCGCCGTCGGCATTCATGAATCGC CACCATCGTCATCGTCCTCTTCCTCGTCCCTTGCTACCGGCGCTGCTGAACAAGCGCCTGCCGCCTCTGAACCAGCGCAG TCATCATCCCCGAAGGTGGTTCCTGCCTCGCCGCCGCCAGTGCATAATTCTAATACCATCGCTGTTGTAGATAGCTCTGA TACTGGTGATGGCAATGCGGTTTGTTCTAAGAAGCCAGTGTGGAACAAGCCCTCAAATGGCGTCGTTGAGGTCGGTCCTG TGATGGGTGCTGAATCATGGCCAGCTTTGTCTAAACCCACCAAAGCTTCTGGTAAATTGCCAGCTGAATCCTCTTCCAAG ACTGCTGTTGATGGATCACTCTCCACTTCCATGGGGCCTCGAACTTTGCACTCCCCTCAGAAACAAGGGGCGAGCAATAT AAAACCTAATTCTGCCACAAATCACAATGTGCCTAATAGACAAAGACCGATGAGGCGGACGGGGGGCAGCAACATTGGAT CTGGCCCTGATCAGAGCAGCTACTCCAACCCTCCCCCACCACCGCCACCACCTCCATTTCCTGTATATCAGCTCCCTCCA GTTAGTTATGCTAATATGGTACCAAGTATCCCTGACCCTTCTCGGCGAGATCATTACCGGAACAATAACTGGGATGCAAG ACCATTAGTTGGGGGTTTTGTTCCAAGGATGAATGAACAGCGGGGATCCTCTCGCAGGGGTAATTTTGGGGCCCATCCAC GAGGGGACAGTTCCTATCATAATAATCATGGTGGCAGGCGTGATCAGGATCGTGAAAGTTATGTGAATCCTAGAGATGCT CATGTACCTCAGCCAAGGATGCCTCCAAGAGGATTATTAAGGCACCCACCACCTAGTACTGCTGCATTTGGGGGTCCTCA GCCCATTGCGCCTTTTCCAAATCCCATTGGTTTTCCTGAGTTTTATTACTTTCCAGCAGTGCCATTGGAGCACTTTAGGG GTATGCCATTCTTCTCCCAAAACCCTTCTCCTGCAACATTTTTCCCAGCTTCAGAACCTCCTCTTCCCAATATGATAGTC AAGCAAATTGATTATTATTTTAGTGATCTTAATTTAGTGAAAGATGAGTATTTAAGGTCCAACATGGATGAACAGGGTTG GGTTCCAATTACGTTGATAGCAAACTTTCCTCGGGTTAGGAGTTTGACAAGCAACATCCAGTTAATATTGGATTCGTTAA GAACTTCTACTGTTGTGGAAGTGCAGGGTGACCTGTTGAGGAGGCGTAATGACTGGATGAGATGGCTTCCCTCTGCTCAG CTTCGGGCTGATTCTAGTTCTTTAGCTCCGGGTAGATCAAGATATGCTAACTTGGAAGCTGATTTCCAAACTCTCTCCGT GGAAGAAACAACTAATGATGAAGGTCCAAAGACTTTTAGTCAGTCTCAACTCCCAAATGGCAGTGATGCTGCAGGGAACA ACAACTAA
Protein sequence (LotjaGi5g1v0003800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITAAKSSSNHHSPTTAPSPVPSGPRKNLPSPWAQVVRGGDTDFTAAVGIHESPPSSSSSSSSLATGAAEQAPAASEPAQ SSSPKVVPASPPPVHNSNTIAVVDSSDTGDGNAVCSKKPVWNKPSNGVVEVGPVMGAESWPALSKPTKASGKLPAESSSK TAVDGSLSTSMGPRTLHSPQKQGASNIKPNSATNHNVPNRQRPMRRTGGSNIGSGPDQSSYSNPPPPPPPPPFPVYQLPP VSYANMVPSIPDPSRRDHYRNNNWDARPLVGGFVPRMNEQRGSSRRGNFGAHPRGDSSYHNNHGGRRDQDRESYVNPRDA HVPQPRMPPRGLLRHPPPSTAAFGGPQPIAPFPNPIGFPEFYYFPAVPLEHFRGMPFFSQNPSPATFFPASEPPLPNMIV KQIDYYFSDLNLVKDEYLRSNMDEQGWVPITLIANFPRVRSLTSNIQLILDSLRTSTVVEVQGDLLRRRNDWMRWLPSAQ LRADSSSLAPGRSRYANLEADFQTLSVEETTNDEGPKTFSQSQLPNGSDAAGNNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 240 | 240 | - | – | |
| PANTHER | 25 | 520 | 496 | 5.3E-164 | – | |
| PANTHER | 25 | 520 | 496 | 5.3E-164 | – | |
| MobiDBLite | 51 | 84 | 34 | - | – | |
| MobiDBLite | 92 | 112 | 21 | - | – | |
| MobiDBLite | 151 | 219 | 69 | - | – | |
| MobiDBLite | 220 | 238 | 19 | - | – | |
| MobiDBLite | 270 | 330 | 61 | - | – | |
| MobiDBLite | 299 | 317 | 19 | - | – | |
| Gene3D | 386 | 480 | 95 | 5.9E-31 | ||
| SUPERFAMILY | 387 | 477 | 91 | 8.62E-28 | ||
| ProSiteProfiles | 389 | 478 | 90 | 26.584 | ||
| SMART | 393 | 471 | 79 | 4.7E-26 | ||
| CDD | 397 | 469 | 73 | 2.74276E-33 | – | |
| Pfam | 399 | 454 | 56 | 1.1E-22 | ||
| MobiDBLite | 509 | 535 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0003800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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