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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0005700 |
| Transcript ID | LotjaGi5g1v0005700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G57790.1 F-box family protein; Swiss-Prot: sp|Q9FVS1|FBK23_ARATH F-box/kelch-repeat protein At1g57790; TrEMBL-Plants: tr|G7KT59|G7KT59_MEDTR F-box protein; Found in the gene: LotjaGi5g1v0005700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1449573..1451393) extracted from Lotus japonicus Gifu genome v1.2.
CGTGAGTCCTGCGAGCCCTGCTTCCCCTCTTTCGTTTTCGCGCAGTGAATCAGATGAGAAGCTTAAAGCGAAACCCTCTC TTGCTAGTGTGAGTTTTCTATAGTCTTGTTATCTTCTTCTTTCTTTTTTCTAATATTATTTTATCCTTTTCTGATTTTTG GTTTTTGTTTTTCTGTTAAAAGAAAAGAGAACACTATCTGAGAATGGTAGAACTAGAAGACCACTTGACCAAAACTAAAG AGTCGCTCAATCAAGTAAGTTAATGGTGGAGTTAATAATTTTTCTTTTTTTATTCATGAATAACTCTTTGGTATGTGTGT TTTTGTTTTGATGTGTGCAATTTGCAATGCAACAGGCGATAGACAAGGTGAAAAGTCACTATGACCAGCTCAAGAAGTTC AATTTGAAGCTAAGAGAAAGGAAACAACAGGTACTACTGTGCTACCAATTTCCCTTTTTTTTTTATTGAATCTTATATAT GTACTAGAGTTCAATCCAAATAGCTTATCTAAGTTTGGTTCTTTTTTCCAGTATTGTGTAATTATGTTTTTCCTCCCATG TATTCACCATGATCATTGATTATTGATTTTTTTCGCTGTTGCCTTTCAATATCAGTCATATTCAAGCATGGCGGCTACAC GAGAGAGAAGAGAGTGGTCAGATTTGCCACCAGAATTGTTGGAATTGGTTCTACGAAGGCTAGTCCTGAAAGACTATCTT AAGTGTCGACAAGTGTGTCGGTCGTGGCGAAGCAAAGTTAACGATGCAACCAAGACAAGATGTCCACTTTCTCCTCAATT TCCATCTCTGTTGTTGCTTCCGATAGCTCATTCTCTAATTCGCAACGAGGACCCTGCCACTCTTTTGGACAACATCACTG CACAAAACATCAACCGGCGTCAACGCACCTTCATCCCAACTCATCTTTGGGAAGGTTTCTCTGCATTAGTTCGGTCACAA GAGGGATGGTTGATGTTTCAAGACCTTATTATTAGATGTAATTCAGGGCATAGTTTGTTTTGGATTTTCAATCCAGTGTC TCGTGAAAAATATAAGCTCCCACGAATCAGGCTCGCGAGTCCTCATTTAAAAGTTTCGTTCTCTTACGCACCAGATTCTC AAGACTTATTCGTGGTGATAGGTTCGCTTGGTAAACCTAAATCGACCCCGCATCTTTGTTTTTGCAGGGTCAGTGATAAG TCATGGACTCGGATTGAAACGCCTTTTAAGGATATAATGCTTCTTGGATGGAAATTATATGTTGTGAACGATGATTCTGT GACTATTTTCAATCTCAGAGATAGCAAATCCATTAGGCTAGTTTTGCAGTTGCCAAAGCTTCGTTATGATGGGAAAAGAT CAGAGACATGTAGGCTAGTAAGAGACTCTACATGTGAGCAAGTGTTGCTAATTCTTTATACAAGTGAGTATAAAGATATT CGCATCTTTAAGTTCGACATGAGCAGCCCCAACTGGACAGAGCTAGAGAGTTTGAGTGGTCGTGCCTTATTTGTAGATCG TACAGGGGCTCATGTTATCTCCGCTGCAAATTTTAACACTCCACTAGAGTTTGCCGGAGGCAATTGTGTTTTCTTCTCAG TTTTTAAATACAACAACCCTCGTATTGTGGTCTTTTTTTTAAAGGAAAAGAAAATTCGGCATTTGGATATCTCAAGTGTC ATTGGTGGAAATTTGTGGTTCACTCCCTCTCCCTGGTAGAACTTTGTGGTGTTGCTCCTGAACACCCTTTAAAATATCTA TTTAAGAAATGATTCATTGACATATTATGTATATGTGATTTCAAACACGTTTTCTCTTGAC
CDS sequence (LotjaGi5g1v0005700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTACACGAGAGAGAAGAGAGTGGTCAGATTTGCCACCAGAATTGTTGGAATTGGTTCTACGAAGGCTAGTCCT GAAAGACTATCTTAAGTGTCGACAAGTGTGTCGGTCGTGGCGAAGCAAAGTTAACGATGCAACCAAGACAAGATGTCCAC TTTCTCCTCAATTTCCATCTCTGTTGTTGCTTCCGATAGCTCATTCTCTAATTCGCAACGAGGACCCTGCCACTCTTTTG GACAACATCACTGCACAAAACATCAACCGGCGTCAACGCACCTTCATCCCAACTCATCTTTGGGAAGGTTTCTCTGCATT AGTTCGGTCACAAGAGGGATGGTTGATGTTTCAAGACCTTATTATTAGATGTAATTCAGGGCATAGTTTGTTTTGGATTT TCAATCCAGTGTCTCGTGAAAAATATAAGCTCCCACGAATCAGGCTCGCGAGTCCTCATTTAAAAGTTTCGTTCTCTTAC GCACCAGATTCTCAAGACTTATTCGTGGTGATAGGTTCGCTTGGTAAACCTAAATCGACCCCGCATCTTTGTTTTTGCAG GGTCAGTGATAAGTCATGGACTCGGATTGAAACGCCTTTTAAGGATATAATGCTTCTTGGATGGAAATTATATGTTGTGA ACGATGATTCTGTGACTATTTTCAATCTCAGAGATAGCAAATCCATTAGGCTAGTTTTGCAGTTGCCAAAGCTTCGTTAT GATGGGAAAAGATCAGAGACATGTAGGCTAGTAAGAGACTCTACATGTGAGCAAGTGTTGCTAATTCTTTATACAAGTGA GTATAAAGATATTCGCATCTTTAAGTTCGACATGAGCAGCCCCAACTGGACAGAGCTAGAGAGTTTGAGTGGTCGTGCCT TATTTGTAGATCGTACAGGGGCTCATGTTATCTCCGCTGCAAATTTTAACACTCCACTAGAGTTTGCCGGAGGCAATTGT GTTTTCTTCTCAGTTTTTAAATACAACAACCCTCGTATTGTGGTCTTTTTTTTAAAGGAAAAGAAAATTCGGCATTTGGA TATCTCAAGTGTCATTGGTGGAAATTTGTGGTTCACTCCCTCTCCCTGGTAG
Protein sequence (LotjaGi5g1v0005700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATRERREWSDLPPELLELVLRRLVLKDYLKCRQVCRSWRSKVNDATKTRCPLSPQFPSLLLLPIAHSLIRNEDPATLL DNITAQNINRRQRTFIPTHLWEGFSALVRSQEGWLMFQDLIIRCNSGHSLFWIFNPVSREKYKLPRIRLASPHLKVSFSY APDSQDLFVVIGSLGKPKSTPHLCFCRVSDKSWTRIETPFKDIMLLGWKLYVVNDDSVTIFNLRDSKSIRLVLQLPKLRY DGKRSETCRLVRDSTCEQVLLILYTSEYKDIRIFKFDMSSPNWTELESLSGRALFVDRTGAHVISAANFNTPLEFAGGNC VFFSVFKYNNPRIVVFFLKEKKIRHLDISSVIGGNLWFTPSPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 361 | 355 | 3.6E-37 | – | |
| PANTHER | 7 | 361 | 355 | 3.6E-37 | – | |
| ProSiteProfiles | 7 | 61 | 55 | 10.266 | ||
| Gene3D | 9 | 48 | 40 | 2.5E-10 | – | |
| SUPERFAMILY | 9 | 47 | 39 | 1.7E-9 | ||
| Pfam | 10 | 45 | 36 | 9.2E-12 | ||
| SMART | 13 | 52 | 40 | 1.2E-6 | ||
| Pfam | 285 | 327 | 43 | 9.8E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0005700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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