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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0005900 |
| Transcript ID | LotjaGi5g1v0005900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin-regulated protein 2; TAIR: AT1G75750.1 GAST1 protein homolog 1; Swiss-Prot: sp|Q93X17|SNAK2_SOLTU Snakin-2; TrEMBL-Plants: tr|I3S9L6|I3S9L6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0005900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1476992..1478062) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGTCTTTTGAAGCCTTTTGAGCAGGTGAAATCAACACAAAAAGAAATCAAACCTTCAAGCCATGGCCATCTCCAAGA CTCTGTTCGCTCCAATCCTCATTTCTCTCATCCTTTTGCACCTTGTTGAATCAAATGCCAGGGTACCTAAATCTATCATC TTACTTGAATTTATTTCAACATTTTTTTCTTTGCATGCAAATCTCAATTATATGTTCACTTTATTTTTTTTTGCCTGAAT CAACCTTCAAAATGATGAATTGATGAGATATATATGCTTCTTAATTATCAGATGGACAACACCATGGTGGAGAGCCCAAG TCCAAGTCCTTCCTCATCAATCATGGGTACAAATTCCTTGATGCATGTTGTGGCAACAATTAATAGTTTCTTCAAAAATC AAATGTGTTTGTTATATCAGAAAATGTTTCTTCAAAAATCAAATGTGTTTGTTATATCAGAAAATGTTTAATTTGTGATT CTTGAATCCAATCCCCAAATCTGATTGGGGAGATACGGTTTTTGTTTTATATTTGTTTAATTAATTAAATTGATGGAACT TAAAATGCTGCATCATTAAATAATTCATTCACCAAGAAATTGATTAATTTTTTCTGCTGAATTTTTAGATTGTGGCAGCG CTTGTGATGAGAGGTGCAAGTTATCTTCAAGGCCAAATCTATGTAAGAGAGCGTGTGGGACTTGCTGTGAGCGGTGCAAT TGCGTGCCTTCGGGGACTTACGGTCACTATGAAGAGTGTGCTTGTTATGCCAACATGACCACCCACGGTGGTAGGCGCAA GTGCCCTTAATCAATCGTCACATAATAATTCATCTATGCATGTGATTCTCTCAAAATTGATGTATTAATATGAATTCAAT TGTTATTCATACATTCAGTTGTGATATGTATGTAATAATCCACCTAAAAATAAAGTTTTCTTTCTTCTGAAGTACGTTTC CTACTTTAAACCGACTTCTATTTTCTTCATATTTTTTTGGAAATTTCGAAGTTACTTGCAGTAGTTTATTCTCTGAAGAT TTTGGCCTTATAGTAAAGAACATTGCTCTCA
CDS sequence (LotjaGi5g1v0005900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATCTCCAAGACTCTGTTCGCTCCAATCCTCATTTCTCTCATCCTTTTGCACCTTGTTGAATCAAATGCCAGGAT GGACAACACCATGGTGGAGAGCCCAAGTCCAAGTCCTTCCTCATCAATCATGGATTGTGGCAGCGCTTGTGATGAGAGGT GCAAGTTATCTTCAAGGCCAAATCTATGTAAGAGAGCGTGTGGGACTTGCTGTGAGCGGTGCAATTGCGTGCCTTCGGGG ACTTACGGTCACTATGAAGAGTGTGCTTGTTATGCCAACATGACCACCCACGGTGGTAGGCGCAAGTGCCCTTAA
Protein sequence (LotjaGi5g1v0005900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAISKTLFAPILISLILLHLVESNARMDNTMVESPSPSPSSSIMDCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSG TYGHYEECACYANMTTHGGRRKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 4 | 104 | 101 | 2.0E-44 | – | |
| PANTHER | 4 | 104 | 101 | 2.0E-44 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 104 | 81 | - | – | |
| Pfam | 45 | 104 | 60 | 3.1E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0005900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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