Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0008300 |
| Transcript ID | LotjaGi5g1v0008300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small RNA degrading nuclease; TAIR: AT5G67240.1 small RNA degrading nuclease 3; Swiss-Prot: sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3; TrEMBL-Plants: tr|I3SLN1|I3SLN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0008300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1800388..1806277) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAACCCTTCTTCTTCACGACGGCGCAGTCCTTCTTCTTCTTTTTCAGTGTGAATGATATTCAGTTTCAGTTCCACAT ACAGATACAGTCTCTTTAGTTTTCCTATGATTCTATCTATCAGTATCAGTATTATTCAAAATGCTTCTGAATTTTATAAT AATTTTACAATTTGTTCAAATCTGCATATAGGACTCTTGTGAACTGGCGAATATGGACGACAAGATCGACGCCGCAGACA AAAAGGTAAGCTCTCCATACCTGCTCTTTACTTTTCATTTCTTCCTTAATTATCTTTTCTGGTTGCGGAATGTGGACTGT TATTTATGTTGCTAATCTGTTTAAAGCTTGTTCCCATTTATTTCTTCGGTTGTACGACTATGTCATCTACAGAAAGCATG CACTGTGGCACCAGCTCTTGGATATGTTAAATAAGGGCATCCAAGACTAAGTTAAAAATGTAGGGACTCCAAGTTAACCC TTGGACCAGCTCTATTGTTGTAAGAAAATCTTATGTGGCTCTTGTTGCTTTCTTACACTAGTTGTGAGTTGTGACCCCAT CTTATAATTGTTTAATAAGATAAAACATTATATTTTCTATGAAATGAATGAGTTAGTTCATAGAGATAAGTTTTAATTGA CATGTTTGCAAAATTCTTTACAACTTATTTGATTGTGTGCGATGATGATCAAACTCATGATGTCATCTGTTACATAGATA AATTGTGATTTGTTCCAATACTTTTAAGTGGATAATTTGCTAGTTTAGATGGGTGAAATCTCAAACCTGTTTTTTTCTTT GTTTCTTCTTCTTTCTCCTTTGCCCCAGCAAACTAATGCTTACATGTGGGTAGGTGCTGGTTGATATTGTAAAATTGTCA CAAAAAAGAGGCATGAAGGGTAATCTGGGAGACTGGAAAGAGTTCTTGAACAGCTATGATAAAAAGTTTGGGGCAAGTAT GAGTGATCCAGCAAAGAGGACCCATGAAGTCTTGGCTGCATTTCTGAAGACTTTCTCCATGGAGGATGATTTGAAGGTAA TGAATTTTGTAGCACCTTACACATGCGCACATACATCTCTTCTTCTGATGAGGGGAAGTTAATAGTCTTCAAAATGAACC TTGTCCATTTCCTCCTTGTGCTCAGTTTTTTGGCAACATCATGCGACATCATTCAAATCAATACTCGGTAGAGAAACTGA AAGATAAATCTCATGATTCACCTGAGCAGGTATGTTTTCATAACGATCATTCTTTATGAAATTAGGCTAATTTTGGCAGT TAAGCTTTCTTTTTTAGATTATACCAGTACTGAAACTACTGGTAAGTACTAATGTTTTTGTACTTGAGATTCTAGATGGG TTTAAGGCTATTGAGTTATTTCTCAAATATTGATAAGCATTTTGTGTTCATTTTTTTTAGAACTTAATTTCTTTCCCCAA TGTTTTAGTCTTTCTTCCAAGAGCTAACCTTTTACTATTGTTTCCTTAAATGATCCAACATTTTTATTGAATTTTATATT GGTTGTCAGCTATTTAATTACTATTATGTATACCTTATGCATTGTTTTTAATCACAAGTTACATATTGTAATTTTGTGAG TTGGTGTTGGCAGTTATATAATCTGAATCATCATGCCATTTTAACCTTGGCTCTTTGAATTCTTGTTGCTGACCTCATCT AAATCTGGAACCCAAAATTTAAGAGACTGCAATTGATAATTACATTATGCAAAATATCTAAAATTTAGACATATTTTGAT ATTACTTTTGCTGTCAGTTATTCTTTATCCTTCCTACAGTCTTTTGTCTCTGGTGATGGAATTCACGCTATTTTGAAATC AATTAGTGAAAATCTTTACCAATGGTGTTAATTTCATCACCTCCTGCATTTATTGGTGATTGTGCTATGTTTTTTTTAAT GTTGGCAGTACAGGGGCTAGTCCAAATAACTCTCCAACACCCATTATATCCATTGGATTATTCATTTCAATCAATTGATG AGGTTTGTTTACTTGTCATCATCTGTGCTTGAATTTTCCGGTCAACCTATGCGCATTCAAAATGCTATTTAGTTCTTTTA TATGTACACTGCTTATATGTGAACTGCTGTGTGGAATAATACATAATATGTGCATTGGTCTTTCTATTCTGTTCTAGTTG AAGATGTCAAAGAAGTGCCGAAGAAAATTAGCAACAATTTAAAAGAATTCTTTCGATTATAAGGAAAAAGTTTACTTGCA TTCTGGATTGCAGTATTTGAATGTTGAATATGAAGCTCATGGCAATGATTGATAATTTGATATTTTACTGCTCAGTGCAT GAAAATTGAAAAAAAATAGTACGCAATAATCAATTTTTTGTTCATATGGATGCTTTAACATATGAATATTTAAATGAGTC ACATGCTTTTGCTGATGATTTAAATGAATAGTTTCACTTGGATTTGGATAAGAAGAACTGTACAATGGTTCACATTACTC ATCCATTATCTGTGTTGCTTTTTATTGTGGAAAATGAAGAGATGGGTAATTATAAACCTCAGAAAAAATAAAAAAGTGAT GAGGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTTGAAGTCTGTG TGGTAGACCACAATTTAAAGGTAATTTATGTATATTCTTCGTATTACTTGGGACCCCCTCCCTTAAAAAAATTGAGTTGT GCATAACTTTATTTTAAATGACTTCTCCCTTTTGGGGCGTAGATAGATAATTTTCAGAACTTTTCAGGTCAAGCTACACA AACGTGTAAAACCCGACAAAGCAATTGTAGACTATAGAACAGAGGTTACTGGTGTTTCTTCTCGAGATCTAGAGACAGTT ACGTGCACCTTGGCTGATATACAGGTATGTTATGGTTCACTTTGTGGTTTTCCTATTTCATCCGTTCATGTGCTTAATGA AGAAATGTGTTGTATTTTCATAGAAAAAGATGAAGAGGTTGTTATCAAATGGAACCATATTGGTCGGACACAGTTTAGAC AATGATCTACGTGGTAAGTGTCAAACATCTGTTTGGCTGTGTCCTTGATCCTACTGTTAGTTTTTTAGTTAATGAAGGGA ATCACTTCTTGTTGAATTGTTTTCTTGGTCCTATCTTTTTACTGATTGCGTTCGTTTGCAGTGCTGAAGCTAGATCATGT TAGAGTGGTTGACACTGCATATATCTTCCAATCCTTGGATGGATCTATTCACAGGAAACCTTCTTTGAACGGTTTATGTC AGGCAAGTAGCAAATTGTTTACATGCAAAGATCAGGTTCTGTATTACATGCCATCTTATTTATGAAGCATTATGATGTGT TATAACCAGATGGTCAGGTTTTGTTTAATTCCCTTTTCAGTTTTCTGAATTTAAATATTGTTCAGAAATAATATATAAAA TCCATTTTTAAGAAGAAAAAAAACGGTTTGAGCAATATCTTTTTCAATGCTAAAAAAACTGATTTGGAAACTAAAAATAG ACATAGAAAACATCTATTTTTACCTGAAAATAAGAACTGTTTCTAAGTACAGTTTTTTAAAATTGTTCATACGAAACAAG TTTTCACTTTTTCTGTTTTAAAAAACAAAAAACTGTTTTACAAGACAATAATCAAAGACCCTCACTCTTTTTGTTGAATT CCCTTAGACACATTATTTTGAATGTGAAGTCTCCTTGTGCATTTGTGCTGGTTTATGCTTTGGAATTTAAAAGAATACAC TATACAAACTCAGACTAGCAAATTATGGCAAAAGAACAAAGAAGAAACAGACAGCAAACTGATTTAAGATTCATAGTTTG TTACCAATTGTTGTTACAGGCTGTGTTAGGCTATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGATGATGCAT GTGCAGCAATGAAACTTGTTCTTGCAAGGATCAAGCATGGCGTCGATAAAGAATTTCCATTTACGTTGGTTCAGGAGCAT GTAAGCTGTCTGGTATATCTCATGTACTGTTGTACTCATGGTGGCCGGCATCTAAATGTCATAACTGTTCCGTTCTCTCA TTTCAGGTTTCAGAAAGTGATATGACAAAGCTGCTTCTGCACGGGATACCAACCTCTGTAAACATTGAAACACTACATAA AATTGTTCCTGGAGACTTCACAATAGAAGTGAAGGTAAAGTATGTCCTAACCTTAAGGTTTTGATGAAGATTGAAGAGGT TCTTTAGTAATTTTTTGAATAAGTAATTATATACAATTTACAAAGGCTAGACTACCGAATTAAGGAAATAAGTAATTATA TAGAATATCTTTCTTAATCTTCTAAATAAAAATCAAAACTCCTAACAACATAATATGAAATCAGATTACATCTCAATGTT ACAACACTATCATTATCATGTCCACCACAAACACATGATAGGATAATTGCGTATTCTACTCTTATGACATCCAGCTCTTA TCCAACTCTCTTATTCTATCCTAACCACCAAGCTGGCTTTTGGTTTTGTCACATAGTACTCTTGTTCTACTATTGGATTT TTTCCTTGTTTGAGTTCTGATTTGTTATAGAATTTGCTTACAGCCATCCAGGAAAGGTCAAAGAGCAAAATATTCTGCTT TAGCTACCTTTAAGAATCAACAAGAGGCATATGAGGCCTATGAAAATGTCCAAGGAAGCCAAACAAAGGTACTTAGTACA CTACATTTATGATGTACCAATGTTCAATGATGCTACTTGATACAGCTAAATTTTCTAGTTAATTAACTTAAGGGAAGAAA TGGTCAAAGGTAGATTCCCTTCTCTACAATAATACTTAAATCCATTTTTCTAATCGGAACGTTTCAAGTTTAGACTTGTA TTAATTTTTGCCCCTCCGAAAATCTGATTGACAAAATAACTTGTCCTACTGCTTGTTCAACAAAATGAAGATATTTTTTC CGGACAACTTTCTGTTGATAAATTGATATTGTAACACTTTGTACACTTTTTGGAATGCTTTAACCTCATGCTTTGATGTT TATTACTTTATATTAGGATTCATTTGGACGTCCACAGAAAGAAGTCATGTTTCAGCAAAGTACAGGCATGACTGTGAGTC TATTTGTTCGGAAAATGACAGCTGATGAACCCGATAACCTGCTTCCATCTAAGAGAGCTTTGCAAGTGGATGAGGCAGAT GAGGCAGTTAATGCTTCCAAAAAAGCAAAAACGGTTCCTCAAATTGAAGAGGATGCCCTGATAGGCTCTACTAAGGGTGA CACTTGCACTCACTTGAAAGGGATTGAAGCCCTGAATCAACAATTGAAGCAAAAAGATTTGGAGATTGAATCGTTGAGGG AGCAGTTAAGAAAGAGAGATTTTGAAGTCTCCAAGCTGCATATAATGATATCCTCCTTGAAAAATCGAACAAACAAAACA GGGAACAAATTTGCTGCTCTCTAGGAGGATTGAATACACAGTACTCCACATTTACAAAAGTTATGCCGAGGTTTGGGAGA AACATGGAGCTTTGGTACATTTGGTAGTGCTTGTTCTATTCTGCCATTCAAATTTGGAACTAAAATTTTGTCTCGGAGGG ATGAGCACTTAAAATGATGTTATAAACTAACCATGAACTTTACACCTGTAACATCACCCATTTTTGCAATTTTGTTAGAT TAGGGTTCTTTCATATTGTGGTATGTAATTGTTTGAAACATTTATTTTATCTTCTTTCTAGTTCAAACCTGAACTCATTA AATATCAATGGCATTGAGGGCTCCCTTTAGGTGTAAGCATTCAAGTGTTATCAAATAGTCATTCAGATGAATTATGGGCT ACTGGTTGAGCTTATTAGTGCTTATGATATTGGAAATTTGCTATTTGATC
CDS sequence (LotjaGi5g1v0008300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGTAATCTGGGAGACTGGAAAGAGTTCTTGAACAGCTATGATAAAAAGTTTGGGGCAAGTATGAGTGATCCAGC AAAGAGGACCCATGAAGTCTTGGCTGCATTTCTGAAGACTTTCTCCATGGAGGATGATTTGAAGTTTTTTGGCAACATCA TGCGACATCATTCAAATCAATACTCGGTAGAGAAACTGAAAGATAAATCTCATGATTCACCTGAGCAGGGGCTAGTCCAA ATAACTCTCCAACACCCATTATATCCATTGGATTATTCATTTCAATCAATTGATGAGAGATGGGTAATTATAAACCTCAG AAAAAATAAAAAAGTGATGAGGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAG CATTAGTTGAAGTCTGTGTGGTAGACCACAATTTAAAGGTCAAGCTACACAAACGTGTAAAACCCGACAAAGCAATTGTA GACTATAGAACAGAGGTTACTGGTGTTTCTTCTCGAGATCTAGAGACAGTTACGTGCACCTTGGCTGATATACAGAAAAA GATGAAGAGGTTGTTATCAAATGGAACCATATTGGTCGGACACAGTTTAGACAATGATCTACGTGTGCTGAAGCTAGATC ATGTTAGAGTGGTTGACACTGCATATATCTTCCAATCCTTGGATGGATCTATTCACAGGAAACCTTCTTTGAACGGTTTA TGTCAGGCTGTGTTAGGCTATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCAATGAA ACTTGTTCTTGCAAGGATCAAGCATGGCGTCGATAAAGAATTTCCATTTACGTTGGTTCAGGAGCATGTTTCAGAAAGTG ATATGACAAAGCTGCTTCTGCACGGGATACCAACCTCTGTAAACATTGAAACACTACATAAAATTGTTCCTGGAGACTTC ACAATAGAAGTGAAGCCATCCAGGAAAGGTCAAAGAGCAAAATATTCTGCTTTAGCTACCTTTAAGAATCAACAAGAGGC ATATGAGGCCTATGAAAATGTCCAAGGAAGCCAAACAAAGGATTCATTTGGACGTCCACAGAAAGAAGTCATGTTTCAGC AAAGTACAGGCATGACTGTGAGTCTATTTGTTCGGAAAATGACAGCTGATGAACCCGATAACCTGCTTCCATCTAAGAGA GCTTTGCAAGTGGATGAGGCAGATGAGGCAGTTAATGCTTCCAAAAAAGCAAAAACGGTTCCTCAAATTGAAGAGGATGC CCTGATAGGCTCTACTAAGGGTGACACTTGCACTCACTTGAAAGGGATTGAAGCCCTGAATCAACAATTGAAGCAAAAAG ATTTGGAGATTGAATCGTTGAGGGAGCAGTTAAGAAAGAGAGATTTTGAAGTCTCCAAGCTGCATATAATGATATCCTCC TTGAAAAATCGAACAAACAAAACAGGGAACAAATTTGCTGCTCTCTAG
Protein sequence (LotjaGi5g1v0008300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAAFLKTFSMEDDLKFFGNIMRHHSNQYSVEKLKDKSHDSPEQGLVQ ITLQHPLYPLDYSFQSIDERWVIINLRKNKKVMRSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIV DYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSLNGL CQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDF TIEVKPSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTKDSFGRPQKEVMFQQSTGMTVSLFVRKMTADEPDNLLPSKR ALQVDEADEAVNASKKAKTVPQIEEDALIGSTKGDTCTHLKGIEALNQQLKQKDLEIESLREQLRKRDFEVSKLHIMISS LKNRTNKTGNKFAAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 426 | 426 | 3.1E-172 | – | |
| PANTHER | 1 | 426 | 426 | 3.1E-172 | – | |
| Gene3D | 113 | 289 | 177 | 3.5E-43 | ||
| SMART | 117 | 278 | 162 | 6.6E-34 | ||
| SUPERFAMILY | 118 | 274 | 157 | 2.49E-28 | ||
| Pfam | 119 | 268 | 150 | 1.2E-7 | ||
| CDD | 119 | 270 | 152 | 1.36155E-63 | ||
| Coils | 174 | 194 | 21 | - | – | |
| Coils | 443 | 467 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0008300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…