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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0008300 |
| Transcript ID | LotjaGi5g1v0008300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small RNA degrading nuclease; TAIR: AT5G67240.1 small RNA degrading nuclease 3; Swiss-Prot: sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3; TrEMBL-Plants: tr|I3SLN1|I3SLN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0008300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1800440..1806174) extracted from Lotus japonicus Gifu genome v1.2.
CCTATGATTCTATCTATCAGTATCAGTATTATTCAAAATGCTTCTGAATTTTATAATAATTTTACAATTTGTTCAAATCT GCATATAGGACTCTTGTGAACTGGCGAATATGGACGACAAGATCGACGCCGCAGACAAAAAGGTAAGCTCTCCATACCTG CTCTTTACTTTTCATTTCTTCCTTAATTATCTTTTCTGGTTGCGGAATGTGGACTGTTATTTATGTTGCTAATCTGTTTA AAGCTTGTTCCCATTTATTTCTTCGGTTGTACGACTATGTCATCTACAGAAAGCATGCACTGTGGCACCAGCTCTTGGAT ATGTTAAATAAGGGCATCCAAGACTAAGTTAAAAATGTAGGGACTCCAAGTTAACCCTTGGACCAGCTCTATTGTTGTAA GAAAATCTTATGTGGCTCTTGTTGCTTTCTTACACTAGTTGTGAGTTGTGACCCCATCTTATAATTGTTTAATAAGATAA AACATTATATTTTCTATGAAATGAATGAGTTAGTTCATAGAGATAAGTTTTAATTGACATGTTTGCAAAATTCTTTACAA CTTATTTGATTGTGTGCGATGATGATCAAACTCATGATGTCATCTGTTACATAGATAAATTGTGATTTGTTCCAATACTT TTAAGTGGATAATTTGCTAGTTTAGATGGGTGAAATCTCAAACCTGTTTTTTTCTTTGTTTCTTCTTCTTTCTCCTTTGC CCCAGCAAACTAATGCTTACATGTGGGTAGGTGCTGGTTGATATTGTAAAATTGTCACAAAAAAGAGGCATGAAGGGTAA TCTGGGAGACTGGAAAGAGTTCTTGAACAGCTATGATAAAAAGTTTGGGGCAAGTATGAGTGATCCAGCAAAGAGGACCC ATGAAGTCTTGGCTGCATTTCTGAAGACTTTCTCCATGGAGGATGATTTGAAGGTAATGAATTTTGTAGCACCTTACACA TGCGCACATACATCTCTTCTTCTGATGAGGGGAAGTTAATAGTCTTCAAAATGAACCTTGTCCATTTCCTCCTTGTGCTC AGTTTTTTGGCAACATCATGCGACATCATTCAAATCAATACTCGGTAGAGAAACTGAAAGATAAATCTCATGATTCACCT GAGCAGGTATGTTTTCATAACGATCATTCTTTATGAAATTAGGCTAATTTTGGCAGTTAAGCTTTCTTTTTTAGATTATA CCAGTACTGAAACTACTGGTAAGTACTAATGTTTTTGTACTTGAGATTCTAGATGGGTTTAAGGCTATTGAGTTATTTCT CAAATATTGATAAGCATTTTGTGTTCATTTTTTTTAGAACTTAATTTCTTTCCCCAATGTTTTAGTCTTTCTTCCAAGAG CTAACCTTTTACTATTGTTTCCTTAAATGATCCAACATTTTTATTGAATTTTATATTGGTTGTCAGCTATTTAATTACTA TTATGTATACCTTATGCATTGTTTTTAATCACAAGTTACATATTGTAATTTTGTGAGTTGGTGTTGGCAGTTATATAATC TGAATCATCATGCCATTTTAACCTTGGCTCTTTGAATTCTTGTTGCTGACCTCATCTAAATCTGGAACCCAAAATTTAAG AGACTGCAATTGATAATTACATTATGCAAAATATCTAAAATTTAGACATATTTTGATATTACTTTTGCTGTCAGTTATTC TTTATCCTTCCTACAGTCTTTTGTCTCTGGTGATGGAATTCACGCTATTTTGAAATCAATTAGTGAAAATCTTTACCAAT GGTGTTAATTTCATCACCTCCTGCATTTATTGGTGATTGTGCTATGTTTTTTTTAATGTTGGCAGTACAGGGGCTAGTCC AAATAACTCTCCAACACCCATTATATCCATTGGATTATTCATTTCAATCAATTGATGAGGTTTGTTTACTTGTCATCATC TGTGCTTGAATTTTCCGGTCAACCTATGCGCATTCAAAATGCTATTTAGTTCTTTTATATGTACACTGCTTATATGTGAA CTGCTGTGTGGAATAATACATAATATGTGCATTGGTCTTTCTATTCTGTTCTAGTTGAAGATGTCAAAGAAGTGCCGAAG AAAATTAGCAACAATTTAAAAGAATTCTTTCGATTATAAGGAAAAAGTTTACTTGCATTCTGGATTGCAGTATTTGAATG TTGAATATGAAGCTCATGGCAATGATTGATAATTTGATATTTTACTGCTCAGTGCATGAAAATTGAAAAAAAATAGTACG CAATAATCAATTTTTTGTTCATATGGATGCTTTAACATATGAATATTTAAATGAGTCACATGCTTTTGCTGATGATTTAA ATGAATAGTTTCACTTGGATTTGGATAAGAAGAACTGTACAATGGTTCACATTACTCATCCATTATCTGTGTTGCTTTTT ATTGTGGAAAATGAAGAGATGGGTAATTATAAACCTCAGAAAAAATAAAAAAGTGATGAGGTCTACTGCAATGGTTGCTG TTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTTGAAGTCTGTGTGGTAGACCACAATTTAAAGGTA ATTTATGTATATTCTTCGTATTACTTGGGACCCCCTCCCTTAAAAAAATTGAGTTGTGCATAACTTTATTTTAAATGACT TCTCCCTTTTGGGGCGTAGATAGATAATTTTCAGAACTTTTCAGGTCAAGCTACACAAACGTGTAAAACCCGACAAAGCA ATTGTAGACTATAGAACAGAGGTTACTGGTGTTTCTTCTCGAGATCTAGAGACAGTTACGTGCACCTTGGCTGATATACA GGTATGTTATGGTTCACTTTGTGGTTTTCCTATTTCATCCGTTCATGTGCTTAATGAAGAAATGTGTTGTATTTTCATAG AAAAAGATGAAGAGGTTGTTATCAAATGGAACCATATTGGTCGGACACAGTTTAGACAATGATCTACGTGGTAAGTGTCA AACATCTGTTTGGCTGTGTCCTTGATCCTACTGTTAGTTTTTTAGTTAATGAAGGGAATCACTTCTTGTTGAATTGTTTT CTTGGTCCTATCTTTTTACTGATTGCGTTCGTTTGCAGTGCTGAAGCTAGATCATGTTAGAGTGGTTGACACTGCATATA TCTTCCAATCCTTGGATGGATCTATTCACAGGAAACCTTCTTTGAACGGTTTATGTCAGGCAAGTAGCAAATTGTTTACA TGCAAAGATCAGGTTCTGTATTACATGCCATCTTATTTATGAAGCATTATGATGTGTTATAACCAGATGGTCAGGTTTTG TTTAATTCCCTTTTCAGTTTTCTGAATTTAAATATTGTTCAGAAATAATATATAAAATCCATTTTTAAGAAGAAAAAAAA CGGTTTGAGCAATATCTTTTTCAATGCTAAAAAAACTGATTTGGAAACTAAAAATAGACATAGAAAACATCTATTTTTAC CTGAAAATAAGAACTGTTTCTAAGTACAGTTTTTTAAAATTGTTCATACGAAACAAGTTTTCACTTTTTCTGTTTTAAAA AACAAAAAACTGTTTTACAAGACAATAATCAAAGACCCTCACTCTTTTTGTTGAATTCCCTTAGACACATTATTTTGAAT GTGAAGTCTCCTTGTGCATTTGTGCTGGTTTATGCTTTGGAATTTAAAAGAATACACTATACAAACTCAGACTAGCAAAT TATGGCAAAAGAACAAAGAAGAAACAGACAGCAAACTGATTTAAGATTCATAGTTTGTTACCAATTGTTGTTACAGGCTG TGTTAGGCTATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCAATGAAACTTGTTCTT GCAAGGATCAAGCATGGCGTCGATAAAGAATTTCCATTTACGTTGGTTCAGGAGCATGTAAGCTGTCTGGTATATCTCAT GTACTGTTGTACTCATGGTGGCCGGCATCTAAATGTCATAACTGTTCCGTTCTCTCATTTCAGGTTTCAGAAAGTGATAT GACAAAGCTGCTTCTGCACGGGATACCAACCTCTGTAAACATTGAAACACTACATAAAATTGTTCCTGGAGACTTCACAA TAGAAGTGAAGGTAAAGTATGTCCTAACCTTAAGGTTTTGATGAAGATTGAAGAGGTTCTTTAGTAATTTTTTGAATAAG TAATTATATACAATTTACAAAGGCTAGACTACCGAATTAAGGAAATAAGTAATTATATAGAATATCTTTCTTAATCTTCT AAATAAAAATCAAAACTCCTAACAACATAATATGAAATCAGATTACATCTCAATGTTACAACACTATCATTATCATGTCC ACCACAAACACATGATAGGATAATTGCGTATTCTACTCTTATGACATCCAGCTCTTATCCAACTCTCTTATTCTATCCTA ACCACCAAGCTGGCTTTTGGTTTTGTCACATAGTACTCTTGTTCTACTATTGGATTTTTTCCTTGTTTGAGTTCTGATTT GTTATAGAATTTGCTTACAGCCATCCAGGAAAGGTCAAAGAGCAAAATATTCTGCTTTAGCTACCTTTAAGAATCAACAA GAGGCATATGAGGCCTATGAAAATGTCCAAGGAAGCCAAACAAAGGTACTTAGTACACTACATTTATGATGTACCAATGT TCAATGATGCTACTTGATACAGCTAAATTTTCTAGTTAATTAACTTAAGGGAAGAAATGGTCAAAGGTAGATTCCCTTCT CTACAATAATACTTAAATCCATTTTTCTAATCGGAACGTTTCAAGTTTAGACTTGTATTAATTTTTGCCCCTCCGAAAAT CTGATTGACAAAATAACTTGTCCTACTGCTTGTTCAACAAAATGAAGATATTTTTTCCGGACAACTTTCTGTTGATAAAT TGATATTGTAACACTTTGTACACTTTTTGGAATGCTTTAACCTCATGCTTTGATGTTTATTACTTTATATTAGGATTCAT TTGGACGTCCACAGAAAGAAGTCATGTTTCAGCAAAGTACAGGCATGACTGTGAGTCTATTTGTTCGGAAAATGACAGCT GATGAACCCGATAACCTGCTTCCATCTAAGAGAGCTTTGCAAGTGGATGAGGCAGATGAGGCAGTTAATGCTTCCAAAAA AGCAAAAACGGTTCCTCAAATTGAAGAGGATGCCCTGATAGGCTCTACTAAGGGTGACACTTGCACTCACTTGAAAGGGA TTGAAGCCCTGAATCAACAATTGAAGCAAAAAGATTTGGAGATTGAATCGTTGAGGGAGCAGTTAAGAAAGAGAGATTTT GAAGTCTCCAAGCTGCATATAATGATATCCTCCTTGAAAAATCGAACAAACAAAACAGGGAACAAATTTGCTGCTCTCTA GGAGGATTGAATACACAGTACTCCACATTTACAAAAGTTATGCCGAGGTTTGGGAGAAACATGGAGCTTTGGTACATTTG GTAGTGCTTGTTCTATTCTGCCATTCAAATTTGGAACTAAAATTTTGTCTCGGAGGGATGAGCACTTAAAATGATGTTAT AAACTAACCATGAACTTTACACCTGTAACATCACCCATTTTTGCAATTTTGTTAGATTAGGGTTCTTTCATATTGTGGTA TGTAATTGTTTGAAACATTTATTTTATCTTCTTTCTAGTTCAAACCTGAACTCATTAAATATCAATGGCATTGAGGGCTC CCTTTAGGTGTAAGCATTCAAGTGTTATCAAATAGTCATTCAGATGAATTATGGG
CDS sequence (LotjaGi5g1v0008300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGTAATCTGGGAGACTGGAAAGAGTTCTTGAACAGCTATGATAAAAAGTTTGGGGCAAGTATGAGTGATCCAGC AAAGAGGACCCATGAAGTCTTGGCTGCATTTCTGAAGACTTTCTCCATGGAGGATGATTTGAAGTTTTTTGGCAACATCA TGCGACATCATTCAAATCAATACTCGGTAGAGAAACTGAAAGATAAATCTCATGATTCACCTGAGCAGGGGCTAGTCCAA ATAACTCTCCAACACCCATTATATCCATTGGATTATTCATTTCAATCAATTGATGAGAGATGGGTAATTATAAACCTCAG AAAAAATAAAAAAGTGATGAGGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAG CATTAGTTGAAGTCTGTGTGGTAGACCACAATTTAAAGGTCAAGCTACACAAACGTGTAAAACCCGACAAAGCAATTGTA GACTATAGAACAGAGGTTACTGGTGTTTCTTCTCGAGATCTAGAGACAGTTACGTGCACCTTGGCTGATATACAGAAAAA GATGAAGAGGTTGTTATCAAATGGAACCATATTGGTCGGACACAGTTTAGACAATGATCTACGTGTGCTGAAGCTAGATC ATGTTAGAGTGGTTGACACTGCATATATCTTCCAATCCTTGGATGGATCTATTCACAGGAAACCTTCTTTGAACGGTTTA TGTCAGGCTGTGTTAGGCTATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGATGATGCATGTGCAGCAATGAA ACTTGTTCTTGCAAGGATCAAGCATGGCGTCGATAAAGAATTTCCATTTACGTTGGTTCAGGAGCATGTTTCAGAAAGTG ATATGACAAAGCTGCTTCTGCACGGGATACCAACCTCTGTAAACATTGAAACACTACATAAAATTGTTCCTGGAGACTTC ACAATAGAAGTGAAGCCATCCAGGAAAGGTCAAAGAGCAAAATATTCTGCTTTAGCTACCTTTAAGAATCAACAAGAGGC ATATGAGGCCTATGAAAATGTCCAAGGAAGCCAAACAAAGGATTCATTTGGACGTCCACAGAAAGAAGTCATGTTTCAGC AAAGTACAGGCATGACTGTGAGTCTATTTGTTCGGAAAATGACAGCTGATGAACCCGATAACCTGCTTCCATCTAAGAGA GCTTTGCAAGTGGATGAGGCAGATGAGGCAGTTAATGCTTCCAAAAAAGCAAAAACGGTTCCTCAAATTGAAGAGGATGC CCTGATAGGCTCTACTAAGGGTGACACTTGCACTCACTTGAAAGGGATTGAAGCCCTGAATCAACAATTGAAGCAAAAAG ATTTGGAGATTGAATCGTTGAGGGAGCAGTTAAGAAAGAGAGATTTTGAAGTCTCCAAGCTGCATATAATGATATCCTCC TTGAAAAATCGAACAAACAAAACAGGGAACAAATTTGCTGCTCTCTAG
Protein sequence (LotjaGi5g1v0008300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAAFLKTFSMEDDLKFFGNIMRHHSNQYSVEKLKDKSHDSPEQGLVQ ITLQHPLYPLDYSFQSIDERWVIINLRKNKKVMRSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIV DYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSLNGL CQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDF TIEVKPSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTKDSFGRPQKEVMFQQSTGMTVSLFVRKMTADEPDNLLPSKR ALQVDEADEAVNASKKAKTVPQIEEDALIGSTKGDTCTHLKGIEALNQQLKQKDLEIESLREQLRKRDFEVSKLHIMISS LKNRTNKTGNKFAAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 426 | 426 | 3.1E-172 | – | |
| PANTHER | 1 | 426 | 426 | 3.1E-172 | – | |
| Gene3D | 113 | 289 | 177 | 3.5E-43 | ||
| SMART | 117 | 278 | 162 | 6.6E-34 | ||
| SUPERFAMILY | 118 | 274 | 157 | 2.49E-28 | ||
| Pfam | 119 | 268 | 150 | 1.2E-7 | ||
| CDD | 119 | 270 | 152 | 1.36155E-63 | ||
| Coils | 174 | 194 | 21 | - | – | |
| Coils | 443 | 467 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0008300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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