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LotjaGi5g1v0011300.1

Overview

Field Value
Gene ID LotjaGi5g1v0011300
Transcript ID LotjaGi5g1v0011300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description LisH and RanBPM domains containing protein; TAIR: AT1G06060.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SCR9|I3SCR9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0011300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:2579294..2589068) extracted from Lotus japonicus Gifu genome v1.2.

TACACGTAAGACGTAACCACCATATAATAAAACCCCCTTCTTATTTTTTTTATCTTCTTCTTGTGTGTGTTCAGTCACTG CTTCTTACATTTTCATTCGCCTTTGCTCCTCAGAGGATCCCAATCCCAATCCACACCTGACATTGACAACCATGGAACCT GATCCTCGTCAATACGAGAAGATCGTATGTTCCTTACTTCTTCTTCTCTCATGTTTACCCATTTGCGCTTCACTTCGATT CTTCTCTTTCACTCTTTTACAAACCACTGTTCCTTTTGCTGTAAATTTACTTGCTTATTCGACGGTGTTTGTTACTCTAT CAATGTCATCATATCACTGCATTTTGTTCAATTTCAATTTGTTTTTCTCTCTCGCTTACTCGTTCTGTGATAATAGGGTT CCAATTTTCGTGCCCTAGAATGCCTTGATTCGAGTATTTAGTTGCACTTCTAGTTTATTTGATGAATTGATTGTGGTTCA TGTGTCTGAAATTCAGTGAAATTATGATTTCTTAATTGCTTGTGCATTCTTGTACAGCCACTCTGCCTTGTTATACTGTA TGTTACCTTTTTTTTACTCTTGCTAGGATTTATATTATTTAATGCGTTTTAGACGCATATTTTGGGTGTTGTGATGGTAT TGCTGATTGAATGCGGCGGGTATGGTCCATGGATAAATGTTCTTCTATGATGTAAATATCATGTTTGCAAGATGTCATTA TCATAGAGAAATAAACTCTTGTTATTTTTTCAATTTCTAGGAACTCAAGGTAATTAGGCTTTGTTGTTACCGGGGGTCCA TTTTTTTTGCTTACTTCTGTCAATGTTGTCAAGACATGGACCTTTAATTGGGAGGGGGGCGGGTGAAAGATCGTAGAATT TTACGATCGTAGGCCCGATAGTAAGCTACTAGACATGCAAAATTATACCTAACATATACATAGAAAATCACATAGACAAG GAAAATGATCTCCAAATGACATAATTAAAGTCGAAAATAGGTAACGGACGCACTTAATCACATAATTAAAGTTGAACAGA ACAATAAGTAATTAAAAATTACATAACCATCCAAACACAGAATAAAGCCCCTGAACCTAAAACCACCAGATGTCCAAAAC ACACAGAGCAGGATCTCAGAGGGTTTGAACTTGCTGTGTGCAGAAGGAAGGTTGATGAGCTTCGAAGTTGCGAAGCCAAA CCAGGAATAACAGTGATTGAGAGATTGGGCCTTACCCCTAAGATCGTGATTAGACGGATCCTCAATCCACAATTTTACCC GTAAGATTACGATCTTGCATGCGATCCTACAGTTCCAATCCTACATTTGAAGCAGTCCTTGGATCTGAGATCAATCTCAC CATCAAGATAGTAATTTTAACAACATTGCCTATGTGACATAAAATGATTTCAAAAATGAAATCCCATACAAGGGAAGGCC GCTATTGGCCGCGAATAGCGGGATTTCGTGGCCGCGATCCCATCGCGGCAGGGGTCCGCTACGCTACGCGACGGCGCTAT CGCACGCTATCGATAACTATGTCAAGCATTTCCTTTTTAGGTCTGATTTTTGAAGTTTTTTCTGTTTTTTAGAGGTTAAA AATAACTGAGATTGGGCTCATGCAGAATCGCTAATCCCAACAGAGCTGTTGGATATATGGTTACTATCAGAATTTCCTGG TTACTTTTATTCTCTTGTCATAGCTTTAGTAACTAAGCTCCTTCCATATTTTGACTACATGTGTGTGAATGTATTTACAG GCTATTAATGAAAAAGACATCCCCAATATTGTTCTGTCATATCTTATACATAATTGCTATGAAGAGTCAGTGGAATCATT CATTTCATGCACTGGGATTAAGAAGCCTGCAGATTATTTGGAAAACATGGAGAAAAGAAAAAGTAGGTATATTGTTGTTG TTGGAAAATATATCAGTATTTATTGTTTTCCAGTCAATTCTAGAGATTCTATTATTGACTTTTTTATATGTAATAATTTT CTCCTTAATTCAAGGAGTAGTAATTCTCTCCTTAATTCAAGGAGTAATAATTGTATCCTCTCTATAAATACCAGCCTTTG GCTGAGGAATAAAATAGAACAGCATTTACCTATTATTTTTCAATATGGTATCAGAGTCTCTATGACCGAGAGGTCTAGAG TTCGATCCTTGCTCCCCTCACTTTCTAATTAAAAAGTGGAATTTAATTAAGCACATGGTAGGTGGGCCTGTGCATTTATC CACGCTTCAAGCCCAAAGGGCTCTTGCGTGAGGGGGCGTGTTAGAATATAATATAAAACCATTAAAGTGGCCCTTACCCA AGAGCTTAAGCTTTTGGGTTAAGTGGTTATTTGACATGGTATCAAGAGCCCTAGGTTGGGACTTCTACTGTAGAGCTTTC CACAGCTAGTCTGATCAACCTATTTCCTTCCCCGACCCGTTTCACATACCCATTTAGCCTCCTATGGCAGGTCGCAATAG GTGGCCCTCCATAGCAGAGGCCTACACCGGATCCACAGCCAACCACGGCGAACAATCACTTGACTCGGGCGTCAACAGCG GTGATGGCGGTGGCAAAGGAGACGGCGGTGGCCGCGGTAATGGTGGTGGTCGTGGAGATGGCACACCAAAGTTCGTCACA AACAGTGGCGGTAATGACGGCAACAATGAAAACAGAAACAACAGTGTTTATGGTGACAGTAATGTCAATATAGGTTGCAA TGACCAAGAGGGTTCCTCATACTCCCTCAAGGTCAATATTCCTAAGATGAATGGGAAGAACTATAATGAATGGGCCCAAA CCGTTCGCTTGGTATTGGATAGCAAAGGGAAGCTTGGTTTTTTAACAGGAGCAGTAGCTGAACCAACAAGCGGAGACCCT CGTTACAAACAATGGAAATCTGAAAACTCCTTGATTATTGCTTGGTTGGTAAGCTCTATGGAAACTGGAATAGGTAAGCC TTACATGTTTTTGCCTTCTGCAAAGGATGTGTGGGAAGCTGTTAAGGAAACATACTCTGATATTCAAAACTCCTCCCAAA TTTTTGGTTTAAAATCAAAGTTATGGCAGGCTAAACAAGGTGACAGGAGTGTAACTGCTTATTACAATGAGTTGTTGACC CTGTGGCAAGAATTAGATCTCTGTTATGATGACAATTGGAGGTGTACAGAAGATAGTGTTCTGTTTCTCAAGAGGCAAGA AAATGATCGTGTCTTCATGTTTCTTGCTGGGCTAAATACAGACCTTGATGAGGTAAGGGGTCGAGTTTTAGGAAAAATAC CATTGCCAACTCTTCGTGAAACTTTTGCAGAAATCAGAAGGGAGGAGGCACGACAAGGAATTATGATGGGCAAGACACCA CGAAGTTCTGAATCTGAAGGCTCTGCTCTGGCTACTAGGAACCTCGGCGAGGGAAAAAGGTCAGAAAAAGTTCCTTGGTG CGATCACTGCAAGCGCGAATGGCACACACGTGAAAATTGTTGGAAGCTCATAGGAAAACCTCCTAGCTGGAAGAAGAAAG GTCGTCGTGCATTTCAAGCAAGTAATTCTGATCAAGGGCAGCAATCCTCTTCGACTCAGCTTCCGCTCACTACGGAACAA CTAGACAAACTGCTCAAACTCCTCGAGTCTTCAACCCCTTCTTGCTCTATAGCAACAAAAGGTAATTCTGCATGTCTTAG TGTCAGTCCCAGTCATACTTGGATATTAGATTCAGGTGCCTCGGATCACATGACAAGTGAATCCACCTTGTTTTCTTCAT ATAGTCCATGTGCAGGTAATCAAAAAATAAAAATTGCAGATGGCTCTTTTTCAGCCATTGCAGGTAAAGGGTCAGTTGTG TTGTCTCCAGTGTTAACTCTTAACGATGTCCTTCATGTTCCAAACTTATCCTGTAATTTAATGTCTGTTAGTAAATTAAC CCGAGATATAAATTGTCAAACCAATTTTTTCCGTTCTCACTGTGTCTTTCAGGATTTGAACTCGGGGAAGATGATTGGCA GTGCTAAGGAGAGTGGAGGACTCTACTACCTTGACATTGGATCTGCATCACAACTACCTCCAAAAACAATAAGTTCCTGC TTTGAATCCTTTTTTGTTTTGAATAATAATGATGACAACGTTATGTTATGGCATTTACGATTAGGTCATCCTAGTTTTCA TTACTTAAAACACTTGTTTCCTAAGTTATTTTATAATAAGAACCTTTCTTTGCTTAAATGTGAAGCATGTGAGTTTGCAA AGCATCATCGTTCCCAATTTCCAATACAGCCATATAAACCATCAAAACCTTTTTCTATTGTTCACAGTGATGTTTGGGGC CCTAACCGTACAAGTACACTTTCTCTTAAAAAATGGTTCATCACATTTATAGATGACCATTCAAGAGTATGTTGGGTGTA CTTGTTAAAGGGGAAATCAGATGTTTGTCGGGCTGTAAAGGATTTTTGTACAATGGTGCAGAACCAATATCAAACAAATA TTCAAGTCTTTAGAAGTGATAATGGCAAAGAATATTTTAACACTATTTTGGATGATTTTTTCCTAAAAAATGGGATTGTA CATCAAAGTTCATGTCCTAATACTCCTCAACAAAATGGAGTTGCTGAAAGAAAAAATAGACATTTATTGGAGGTTGCTAG AGCATTACTTTTCTCAAGTAAAGTACCAAACTATTTGTGGGGCGAAGCTGTTTTAACAGCGGCATATTTAATTAATAGAA TGCCCTCCAAAGTTCTCAATTTCCAAACTCCAATTAATACTTTCAAAGAATGTTTTCCTAGTACTCGTGTTTCAACTGAT TTGACATTAAAAATCTTTGGTTGCATAGCCTTTGTTCATGAACATAAAAATGTTGGAAAACTTGAACCACGTGCTATAAA ATGTGTTTTTGTTGGATACTCCCCAACCCAAAAGGGGTATAAATGTTTTGATCCAAAAAACAAGAAAATGTTTGTCACTA TGGACGTTACGTTTTTTGAAAATAAACCTTTTTTTAATGACACTCATCTTCAAGGGGGGGATATAAAGGAAGACTCGTTT CAAATTGAGGACATGAGTTTTTTAAATAAATTATCTTTGCCTGTACCACAAAGCTCTAAGACTTATAGTTCTGCACCAAC AGAAAATGGCCAAGATACTCTATCTGATCCTACTCCTGTTATGAGTAAGGAACTTGAGGAATCAGAGCCTACATTTTCTC ATGAAGAAACCAATGAGAATCTTGACAATAGGGATGATGATGATCTAATTAAAATGCCACAAAATAATGAGTCACTTAAA GAGAACAGATTTGAAGTAGGAAACAGGACTTGGAAAGGGAAGGTTTATGTGAAAAAGCACCACAAAGAAAGGAATGAGTC CACATCTCAACACTGTCAGGAATCTGAACCGGGGAATGATCAACCTCCTAAGAAAATGAAAGGTAAGTCTATCTCTGTTT CTGAGAGTCGTATTTTGTATCCTGATATAGATGATCCTGTTGCCATTAGAAAACCTGTTAGATCTTGCACTAAACACCCT ATTTCCAATTTTATATCATATTCAAATTTGTCTTCATCTCTGTCTGCCTTCACCTCAAAATTGTCTAGTGTAGAAATTCC AAAAAATGTCCAGGTTGCTCTAGAAATTCCAAAGTGGAGGGAAGCTGTACTTGAGGAGATGACAGCTCTTGAAAAGAACA AAACTTGGAGTGTTATGACACTACCAGATGGCAAGAAGACAGTTGGATGCAAATGGGTGTTTACTGTGAAGTATAATTCA GATGGGTCAATTGAAAGGTACAAGGCTCGCTTGGTGGCGAAGGGCTTTACTCAGACCTATGGTATAGACTACTCAGAGAC ATTTGCTCCTGTTGCAAAATTGAACACTGTCCGAATTCTCTTATCTCTTGCTGCCAACCTGGATTGGCCCCTACATCAAT TGGATGTTAAGAATGCGTTTCTTAATGGTGATCTAGAAGAAGAAGTATATATGGAGATTCCTCCTGGCTTTGAAAGCAAA TTTGGATCAAATGTATGCAAACTAAATAGGTCTTTGTATGGATTAAAGCAGTCCCCTAGAGCTTGGTTTGAAAAATTCAC TCAGTCCATGAAGAAACAAGGGTACACTCAAGGACAGGCTGACCACACCTTATTCACAAAATTCTCCCATGATGGGAAAG TTGCTGCCCTGATTGTTTATGTTGATGATATTGTCCTTACTGGAGATGATACAGTTGAAATGGCAAGAGTAAAAGAGAAA TTAGCAGTAGACTTTGAAATCAAGGACTTAGGACCCATGAGATATTTTCTTGGAATGGAGGTTGCTCGATCAAAGAATGG TATTGTGGTTTCACAGCAGAAATACATTCTAGACTTATTGAAAGAAACAGGAATGAGTGGATGTCGTCCAGCAGATACCC CTATGGATCCTAATGCTAAACTTTGGGAAGAAGGTAGTGTTCCCGTTGATACTGGAAGATACCAAAGATTGGTTGGGAAA CTGATTTATTTGTCACACACTCGACCTGATATTGCTTTCTCAGTTAGTGCAGTGAGTCAGTTCATGCATTCTCCTTTTGA GGAACATCTTGAGGCAGTCTATAGGATACTGAGATATTTGAAGGGAAATCCCGGAAAAGGCTTATTTTTTAAGAAGACTA GTGAAAGAAATGTGTCTATCTTCACCGATGCTGATTGGGCAGGCTCAGTCACAGATAGAAGATCAACCTCTGGATATTGT ACCTATGTTTGGGGTAATCTTGTGACATGGAGGAGCAAGAAACAAGGAGTTGTGGCAAGAAGTAGTGCAGAAGCTGAGTT TAGAGCTATGGCTCAAGGTATTTGTGAAGGATTATGGATTCATAGAGTCCTAGAAGAACTTAAGATGAAAATTGAGCTTC CATTGAAATTATACTCCGACAGTAAAGCTGCTATTAGCATAGCTCATAACCCAGTTCAACATGACAGAACCAAGCATATT GAGATTGATCGACATTTCATAAAGGAGAAGTTAGATGCTGGAATCATATGTCTACCTTTTGTGACTTCGAGTCAGCAAAC TGCGGATATCCTGACCAAGAGCTTGGCAAGACCTACCTTTGAGCATTTGATAGGCAAGTTGGGCATGATAGATATCTATG CACCAACTTGAGGGGGGGTGTTGGAAAATATATCAGTATTTATTGTTTTCCAGTCAATTCTAGAGATTCTATTATTGACT TTTTTATATGTAATAATTTTCTCCTTAATTCAAGGAGTAGTAATTCTCTCCTTAATTCAAGGAGTAATAATTGTATCCTC TCTATAAATACCAGCCTTTGGCTGAGGAATAAAATAGAACAGCATTTACCTATTATTTTTCAATAGTTGTCTTTCAGTGT AAACGGACTTGTACATTTGTGGTGTGACTATCATTTATTTGCTCGAGTACTTCAAATTTTCTTAATAATCAATGCTGCAT TTCTTTTGTATTGTATCAAACATGGATATTAGATTACTGGGCCTCCAATCTAAAGGATGCTGAATCACTTTTTCCTTTTA ATGCCACTTGAAACTTCTGCTCTTTTTGCCAATTTTTTCTGATTTTTTGTCACAGATGCAGATGCTTTTTTCTTTCATAC CTTTGAATTAAGATTTCAAGTTTCCTTCTCTTGAATATTTCCTTCCCTCCTCTGCACTTTTATAGAAGTCTATGCTGTGG AATGCTCCTATTTATCTATAAGGTTATTTGTTAGCAATGCCTCCTTGACAGTAAATTTTATTTCTTCAGAAATCTTTCAC TATGCACTGGAGAGAAATGCACTTAAGGCTATTGAGCTAACAGAACAGCTGGCAAAGGATATTCTAGAAAACAATAAGGA TTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGAGCTTGTCCGCTCTAGGAAATGGTGAGATAAGATTAAATTTTTTC TCCAAGAGAACATGCTTCAAACTTCTTTGTTTTAATAGAATCTCATGATATTGGCAGCACAGAAGCTTTGGAATTTGCTC AGACCAAGTTGAGCCCTTTTGGAAAGGAGCAAAAATATATGCAAAACCTTGAAGTATGTCTGCCTTTTACATAATTCAGT TTATGCATTTGTGGTGTGTTGTTAAGGTTGAAGTAAATATGAAGCTGGCCGTTTTGCAGGATTTTATGGCCCTTCTTGCT TATCAGGAGCCAGAGAAATCCCCAGTGTTTCATTTGCTTAGCCCAGAGTATCGTCAACAGGTTGCAGATAGATTGAATCG AGCTATTCTTGGTAGGTTAACTCGACCATACTCCTTGCGTAGTGCATATTAATATAATCCTTATTGCAAATCTCCCTACT TTGTTCTACCTGTGTGAAATTATAAGTTTTTTTTGTTCATGTTGGTGATTTTCAGCATACTTTAACCTTCCCAGCCACAC AGCAATGGAGAGGCTGATACAGCAGACGACAGTAGTTAGACAGTGCTTAAGTCAGGAGGCTGGAAAGGTAATAGGCAATT TATAATATTCCTTTATCATTTTCTGGGTTTGATGGCTGCATTATGTTGGCTGATTTTTCATGGCATATGCATTTTAGATT CTCACAAATTTCTGTATATCTGAGAAACTATTTGATCGCTTATCTATTTTTCGAGTGAGAGCATGTAAGCAAGCACTCAC AAGTGCGAAAAGAGATGTAACTGCTCTATTGTCCACAAGTTCAAGTTATGATTTCTTGATTAACTCTTTGTAGGATGGGC ACCAGCCATTTTCCTTGAAGGATTTTCTTAAGAGAAGATGAGAAAGCAGTTAAATAAATATCCACCTGAAATTGGGGTAT GAAGCAAGATTACTTTTTATGCCTTTGTTGCCAAACATAGGATTAATTTATGGTTTGATCATTGGTGTAAAGTTAACGCT ATTCATGTATAAAATTATTGTACTGGGTAACTGGGCTATCTAGATCTTTCTGGTTTTGAAGTAGGAGCGTTCCATGAAAA TGGAGAAGATTGCAATTGGTGCCGAGTGGAAATTTACAATTTTGAAGCGGGGAAGCTTCTCCCCAAAATTGACTTTAGAA TCAATTATTGAAGATATTTTTTTAGAAATTAGAAACTTTTATTAGATAGAAAAAGGTCGATAGGACAAGCATCACATAAC AATGTGAGCATAGTCCCCCAATGCAACAAATCCTAAAACTGAGCTTGCCCCATAAACATATACTAGTGTTAAATAGTGTT AGTGTCAATTATTCAATGTTTGTCTATTATAGTTTTGGTTAAGCGTGGGAAGAAGCATGAGTTCGTCTATATTTCTACAA GTTTGATATATTCGCACCCCCTCTTTCTCTTTAACTCATTTTCTTTCTCTTCTTATCCCATCATATCATCTATCATATAT TTCACTTCTCAAACTAATTTTCCTATTAAAGGGTGGAGGTGAAATTGATGAGAAGAGAACTATAACTATTTTTTCACTCT TTAATCAACAACTATAACTCTATTTAACCAAGCGGGTTGGTACAAATGGGTAGGAGGTCAAATGTTCAATTCTCCCTAGT CATTTAAACTTTTGCTTGTGGGCATCCCTTCTAGGGAGACTTTTATAGTTTAGACATGCCTAGTCATCCTTTGAGTTGAT TCATATCCCCAACATGTCATTGTGGTGAATGTGATGGAGCCAATGGCTTATCCGCTAAATTAAATATATATTTTTTCTGA AAGTTTTCTTCACATTTTGTACATTAGAGTTTAATAGAAAAAGATTGGAATGAGATTTCCTAAATTTTCCTTTTTTTCAT CAACTATATATGTTT 

CDS sequence (LotjaGi5g1v0011300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACCTGATCCTCGTCAATACGAGAAGATCGCTATTAATGAAAAAGACATCCCCAATATTGTTCTGTCATATCTTAT ACATAATTGCTATGAAGAGTCAGTGGAATCATTCATTTCATGCACTGGGATTAAGAAGCCTGCAGATTATTTGGAAAACA TGGAGAAAAGAAAAAAAATCTTTCACTATGCACTGGAGAGAAATGCACTTAAGGCTATTGAGCTAACAGAACAGCTGGCA AAGGATATTCTAGAAAACAATAAGGATTTGCTGTTTGATCTTCTAAGCCTTCATTTTGTAGAGCTTGTCCGCTCTAGGAA ATGCACAGAAGCTTTGGAATTTGCTCAGACCAAGTTGAGCCCTTTTGGAAAGGAGCAAAAATATATGCAAAACCTTGAAG ATTTTATGGCCCTTCTTGCTTATCAGGAGCCAGAGAAATCCCCAGTGTTTCATTTGCTTAGCCCAGAGTATCGTCAACAG GTTGCAGATAGATTGAATCGAGCTATTCTTGCATACTTTAACCTTCCCAGCCACACAGCAATGGAGAGGCTGATACAGCA GACGACAGTAGTTAGACAGTGCTTAAGTCAGGAGGCTGGAAAGGATGGGCACCAGCCATTTTCCTTGAAGGATTTTCTTA AGAGAAGATGA 

Protein sequence (LotjaGi5g1v0011300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEPDPRQYEKIAINEKDIPNIVLSYLIHNCYEESVESFISCTGIKKPADYLENMEKRKKIFHYALERNALKAIELTEQLA KDILENNKDLLFDLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEQKYMQNLEDFMALLAYQEPEKSPVFHLLSPEYRQQ VADRLNRAILAYFNLPSHTAMERLIQQTTVVRQCLSQEAGKDGHQPFSLKDFLKRR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 214 214 5.9E-115
PANTHER 1 214 214 5.9E-115
ProSiteProfiles 14 46 33 8.561
SMART 53 110 58 8.7E-9
ProSiteProfiles 53 110 58 11.873
Pfam 54 192 139 5.1E-33
SMART 106 201 96 5.4E-30

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0011300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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