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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006595
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 86 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.815s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0057879.1
n.a. PREDICTED: glucose-induced degradation protein 8 homolog [Cicer arietinum] gi|502126173|ref|XP_004499207.1| chr0 19042578 19046133 +
3 domain predictions
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Lj0g3v0060299.1
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr0 20048466 20053713 -
3 domain predictions
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Lj0g3v0060309.1
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr0 20060674 20069782 -
3 domain predictions
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Lj0g3v0246299.1
n.a. PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum] gi|502098628|ref|XP_004491280.1| chr0 127620996 127622858 +
3 domain predictions
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Lj0g3v0257619.1
n.a. PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum] gi|502114759|ref|XP_004495043.1| chr0 133737003 133737916 -
3 domain predictions
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Lj0g3v0269979.1
n.a. PREDICTED: topless-related protein 4-like [Glycine max] gi|356546114|ref|XP_003541476.1| chr0 139884904 139890687 +
3 domain predictions
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Lj0g3v0269979.2
n.a. PREDICTED: topless-related protein 4-like [Glycine max] gi|356546114|ref|XP_003541476.1| chr0 139884904 139890687 +
3 domain predictions
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Lj0g3v0299869.3
n.a. PREDICTED: topless-related protein 1-like [Glycine max] gi|356550630|ref|XP_003543688.1| chr0 155787253 155791878 -
3 domain predictions
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Lj0g3v0301709.1
n.a. SymRK interaction E3 ligase [Lotus japonicus] gi|388267601|gb|AFK25801.1| chr0 156838633 156841275 +
3 domain predictions
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Lj0g3v0302539.1
n.a. C-terminal LisH motif isoform 1 [Theobroma cacao] gi|508699477|gb|EOX91373.1| chr0 157399461 157411557 -
3 domain predictions
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Lj0g3v0302539.4
n.a. C-terminal LisH motif isoform 1 [Theobroma cacao] gi|508699477|gb|EOX91373.1| chr0 157399461 157414869 -
3 domain predictions
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Lj2g3v3072930.1
n.a. PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum] gi|502098628|ref|XP_004491280.1| chr2 39535774 39540762 +
3 domain predictions
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Lj2g3v3072940.1
n.a. PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum] gi|502098628|ref|XP_004491280.1| chr2 39535781 39540084 +
3 domain predictions
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Lj3g3v3755440.1
n.a. PREDICTED: ran-binding protein 10-like [Glycine max] gi|356541828|ref|XP_003539374.1| chr3 45542881 45552227 -
3 domain predictions
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Lj4g3v0450190.1
n.a. PREDICTED: glucose-induced degradation protein 8 homolog [Solanum lycopersicum] gi|460376690|ref|XP_004234130.1| chr4 6148451 6152438 -
3 domain predictions
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Lj4g3v0450200.1
n.a. PREDICTED: glucose-induced degradation protein 8 homolog isoform X1 [Cicer arietinum] gi|502077771|ref|XP_004485740.1| chr4 6154466 6158352 -
3 domain predictions
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Lj4g3v1881470.1
n.a. PREDICTED: topless-related protein 4-like isoform X1 [Cicer arietinum] gi|502151499|ref|XP_004508471.1| chr4 26477491 26487600 -
3 domain predictions
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Lj4g3v1881470.2
n.a. PREDICTED: topless-related protein 4-like isoform X1 [Cicer arietinum] gi|502151499|ref|XP_004508471.1| chr4 26477491 26487600 -
3 domain predictions
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Lj4g3v2289120.1
n.a. PREDICTED: topless-related protein 2-like [Cicer arietinum] gi|502150907|ref|XP_004508183.1| chr4 31831793 31841555 -
3 domain predictions
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Lj5g3v0144400.1
n.a. PREDICTED: glucose-induced degradation protein 8 homolog [Cicer arietinum] gi|502126173|ref|XP_004499207.1| chr5 1460925 1472848 +
3 domain predictions
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Lj5g3v1511490.1
n.a. Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] gi|87162556|gb|ABD28351.1| chr5 21997495 22021980 +
3 domain predictions
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Lj5g3v2290060.1
n.a. PREDICTED: macrophage erythroblast attacher-like [Glycine max] gi|356574997|ref|XP_003555629.1| chr5 33482654 33498784 -
3 domain predictions
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Lj5g3v2290060.2
n.a. PREDICTED: macrophage erythroblast attacher-like [Glycine max] gi|356536518|ref|XP_003536784.1| chr5 33482654 33499529 -
3 domain predictions
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Lj6g3v1018310.1
n.a. PREDICTED: WD40 repeat-containing protein SMU1-like isoform X1 [Cicer arietinum] gi|502152361|ref|XP_004508891.1| chr6 11291741 11301581 +
3 domain predictions
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Lj6g3v1513530.2
n.a. PREDICTED: topless-related protein 2-like [Cicer arietinum] gi|502150907|ref|XP_004508183.1| chr6 17425648 17431016 +
3 domain predictions
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Lj6g3v2055740.1
n.a. PREDICTED: UPF0559 protein-like [Glycine max] gi|356549385|ref|XP_003543074.1| chr6 24306192 24309879 +
3 domain predictions
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Lj6g3v2171950.1
n.a. PREDICTED: protein RMD5 homolog A-like isoform X2 [Cicer arietinum] gi|502077391|ref|XP_004485638.1| chr6 25108955 25114088 +
3 domain predictions
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LotjaGi1g1v0046500.1
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6348822 -
3 domain predictions
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LotjaGi1g1v0046500.2
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
3 domain predictions
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LotjaGi1g1v0046500.3
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
3 domain predictions
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LotjaGi1g1v0046500.4
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
3 domain predictions
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LotjaGi1g1v0046500.5
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
3 domain predictions
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LotjaGi1g1v0046500.6
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344117 6355578 -
3 domain predictions
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LotjaGi1g1v0046500.7
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6344668 6348119 -
3 domain predictions
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LotjaGi1g1v0046500.8
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6349927 6355578 -
3 domain predictions
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LotjaGi1g1v0046500.9
n.a. WD-repeat protein, putative; TAIR: AT5G08560.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q28D01|WDR26_XENTR WD repeat-containing protein 26; TrEMBL-Plants: tr|A0A151U202|A0A151U202_CAJCA WD repeat-containing protein 26; Found in the gene: LotjaGi1g1v0046500 LjG1.1_chr1 6350520 6354340 -
3 domain predictions
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LotjaGi3g1v0007100.10
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|V7C0F7|V7C0F7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007100 LjG1.1_chr3 848548 856657 +
3 domain predictions
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LotjaGi3g1v0007100.11
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|V7C0F7|V7C0F7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007100 LjG1.1_chr3 848548 856657 +
3 domain predictions
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LotjaGi3g1v0007100.3
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|V7C0F7|V7C0F7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0007100 LjG1.1_chr3 846914 857385 +
3 domain predictions
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LotjaGi3g1v0007100.4
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|A0A1J7GTX7|A0A1J7GTX7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0007100 LjG1.1_chr3 847833 857091 +
3 domain predictions
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LotjaGi3g1v0007100.5
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|A0A1J7GTX7|A0A1J7GTX7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0007100 LjG1.1_chr3 847998 857209 +
3 domain predictions
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LotjaGi3g1v0007100.7
n.a. Topless-related protein 1; TAIR: AT1G80490.2 TOPLESS-related 1; Swiss-Prot: sp|Q0WV90|TPR1_ARATH Topless-related protein 1; TrEMBL-Plants: tr|A0A0A0KTH7|A0A0A0KTH7_CUCSA Uncharacterized protein; Found in the gene: LotjaGi3g1v0007100 LjG1.1_chr3 848519 856657 +
3 domain predictions
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LotjaGi3g1v0007100.8
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|A0A0R0H7M5|A0A0R0H7M5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0007100 LjG1.1_chr3 848548 856657 +
3 domain predictions
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LotjaGi3g1v0007100.9
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|A0A1J7GTX7|A0A1J7GTX7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0007100 LjG1.1_chr3 848548 856657 +
3 domain predictions
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LotjaGi3g1v0179400.1
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 LjG1.1_chr3 25001306 25004302 +
3 domain predictions
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LotjaGi3g1v0179400.2
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 LjG1.1_chr3 25002595 25003755 +
3 domain predictions
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LotjaGi3g1v0353700.1
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|I1KVH4|I1KVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 LjG1.1_chr3 73447665 73456548 +
3 domain predictions
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LotjaGi3g1v0353700.2
n.a. Topless-related 1-like protein; TAIR: AT3G15880.3 WUS-interacting protein 2; Swiss-Prot: sp|Q10NY2|TPR3_ORYSJ Protein TPR3; TrEMBL-Plants: tr|A0A0R0J9B8|A0A0R0J9B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 LjG1.1_chr3 73448549 73456064 +
3 domain predictions
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LotjaGi3g1v0353700.3
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|I1KVH4|I1KVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 LjG1.1_chr3 73448585 73456064 +
3 domain predictions
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LotjaGi3g1v0353700.4
n.a. Topless-related protein 1; TAIR: AT1G15750.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q94AI7|TPL_ARATH Protein TOPLESS; TrEMBL-Plants: tr|I1KVH4|I1KVH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 LjG1.1_chr3 73448585 73456064 +
3 domain predictions
 –