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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR024964
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.532s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0057879.1
n.a. PREDICTED: glucose-induced degradation protein 8 homolog [Cicer arietinum] gi|502126173|ref|XP_004499207.1| chr0 19042578 19046133 +
2 domain predictions
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Lj0g3v0301709.1
n.a. SymRK interaction E3 ligase [Lotus japonicus] gi|388267601|gb|AFK25801.1| chr0 156838633 156841275 +
2 domain predictions
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Lj0g3v0302539.1
n.a. C-terminal LisH motif isoform 1 [Theobroma cacao] gi|508699477|gb|EOX91373.1| chr0 157399461 157411557 -
2 domain predictions
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Lj0g3v0302539.4
n.a. C-terminal LisH motif isoform 1 [Theobroma cacao] gi|508699477|gb|EOX91373.1| chr0 157399461 157414869 -
2 domain predictions
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Lj3g3v3755440.1
n.a. PREDICTED: ran-binding protein 10-like [Glycine max] gi|356541828|ref|XP_003539374.1| chr3 45542881 45552227 -
2 domain predictions
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Lj4g3v0450190.1
n.a. PREDICTED: glucose-induced degradation protein 8 homolog [Solanum lycopersicum] gi|460376690|ref|XP_004234130.1| chr4 6148451 6152438 -
2 domain predictions
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Lj4g3v0450200.1
n.a. PREDICTED: glucose-induced degradation protein 8 homolog isoform X1 [Cicer arietinum] gi|502077771|ref|XP_004485740.1| chr4 6154466 6158352 -
2 domain predictions
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Lj5g3v0144400.1
n.a. PREDICTED: glucose-induced degradation protein 8 homolog [Cicer arietinum] gi|502126173|ref|XP_004499207.1| chr5 1460925 1472848 +
2 domain predictions
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Lj5g3v2290060.1
n.a. PREDICTED: macrophage erythroblast attacher-like [Glycine max] gi|356574997|ref|XP_003555629.1| chr5 33482654 33498784 -
2 domain predictions
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Lj5g3v2290060.2
n.a. PREDICTED: macrophage erythroblast attacher-like [Glycine max] gi|356536518|ref|XP_003536784.1| chr5 33482654 33499529 -
2 domain predictions
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Lj6g3v2055740.1
n.a. PREDICTED: UPF0559 protein-like [Glycine max] gi|356549385|ref|XP_003543074.1| chr6 24306192 24309879 +
2 domain predictions
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Lj6g3v2171950.1
n.a. PREDICTED: protein RMD5 homolog A-like isoform X2 [Cicer arietinum] gi|502077391|ref|XP_004485638.1| chr6 25108955 25114088 +
2 domain predictions
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LotjaGi3g1v0179400.1
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 LjG1.1_chr3 25001306 25004302 +
2 domain predictions
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LotjaGi3g1v0179400.2
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A; TrEMBL-Plants: tr|K0BV36|K0BV36_LOTJA SIE3; Found in the gene: LotjaGi3g1v0179400 LjG1.1_chr3 25002595 25003755 +
2 domain predictions
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LotjaGi3g1v0556900.1
n.a. Ran-binding protein 10; TAIR: AT1G35470.2 SPla/RYanodine receptor (SPRY) domain-containing protein; Swiss-Prot: sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10; TrEMBL-Plants: tr|I1LNN2|I1LNN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556900 LjG1.1_chr3 97478257 97488320 -
2 domain predictions
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LotjaGi4g1v0052000.1
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|A0A151T7P0|A0A151T7P0_CAJCA UPF0559 protein; Found in the gene: LotjaGi4g1v0052000 LjG1.1_chr4 6265341 6269423 -
2 domain predictions
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LotjaGi4g1v0052000.2
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3T4M7|I3T4M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0052000 LjG1.1_chr4 6265341 6269423 -
2 domain predictions
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LotjaGi4g1v0052000.3
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3T4M7|I3T4M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0052000 LjG1.1_chr4 6265341 6275311 -
2 domain predictions
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LotjaGi4g1v0052000.4
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|A0A1J7GYJ9|A0A1J7GYJ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0052000 LjG1.1_chr4 6271192 6275310 -
2 domain predictions
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LotjaGi4g1v0171600_LC.1
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q9H871|RMD5A_HUMAN Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151SYZ5|A0A151SYZ5_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi4g1v0171600_LC LjG1.1_chr4 33892623 33893783 +
2 domain predictions
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LotjaGi5g1v0011300.1
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G06060.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SCR9|I3SCR9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0011300 LjG1.1_chr5 2579294 2589068 -
2 domain predictions
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LotjaGi5g1v0011300.2
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G06060.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I1K7N4|I1K7N4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0011300 LjG1.1_chr5 2580308 2587444 -
2 domain predictions
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LotjaGi5g1v0360500.1
n.a. Macrophage erythroblast attacher; TAIR: AT3G55070.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher; TrEMBL-Plants: tr|A0A0R0I117|A0A0R0I117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0360500 LjG1.1_chr5 67477175 67481936 -
2 domain predictions
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LotjaGi5g1v0360500.2
n.a. Macrophage erythroblast attacher; TAIR: AT3G55070.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher; TrEMBL-Plants: tr|A0A0R0I117|A0A0R0I117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0360500 LjG1.1_chr5 67477444 67481644 -
2 domain predictions
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LotjaGi5g1v0360500.3
n.a. Macrophage erythroblast attacher; TAIR: AT3G55070.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher; TrEMBL-Plants: tr|A0A0R0I117|A0A0R0I117_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0360500 LjG1.1_chr5 67477444 67481680 -
2 domain predictions
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LotjaGi6g1v0336300.1
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65074048 65079361 +
2 domain predictions
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LotjaGi6g1v0336300.2
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65074814 65077612 +
2 domain predictions
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LotjaGi6g1v0336300.3
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65075013 65077612 +
2 domain predictions
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LotjaGi6g1v0336300.4
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.2 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65075057 65077612 +
2 domain predictions
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LotjaGi6g1v0336300.5
n.a. LisH and RanBPM domains containing protein; TAIR: AT1G61150.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I3SJR3|I3SJR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0336300 LjG1.1_chr6 65075311 65077612 +
2 domain predictions
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LotjaGi6g1v0346500.1
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 LjG1.1_chr6 65892461 65899032 +
2 domain predictions
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LotjaGi6g1v0346500.2
n.a. Protein RMD5 like A; TAIR: AT4G37880.1 LisH/CRA/RING-U-box domains-containing protein; Swiss-Prot: sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A; TrEMBL-Plants: tr|A0A151S0Z4|A0A151S0Z4_CAJCA Protein RMD5 isogeny A; Found in the gene: LotjaGi6g1v0346500 LjG1.1_chr6 65896279 65897433 +
2 domain predictions
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