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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0011300 |
| Transcript ID | LotjaGi5g1v0011300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LisH and RanBPM domains containing protein; TAIR: AT1G06060.1 LisH and RanBPM domains containing protein; Swiss-Prot: sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog; TrEMBL-Plants: tr|I1K7N4|I1K7N4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0011300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2580308..2587444) extracted from Lotus japonicus Gifu genome v1.2.
GAATCGCTAATCCCAACAGAGCTGTTGGATATATGGTTACTATCAGAATTTCCTGGTTACTTTTATTCTCTTGTCATAGC TTTAGTAACTAAGCTCCTTCCATATTTTGACTACATGTGTGTGAATGTATTTACAGGCTATTAATGAAAAAGACATCCCC AATATTGTTCTGTCATATCTTATACATAATTGCTATGAAGAGTCAGTGGAATCATTCATTTCATGCACTGGGATTAAGAA GCCTGCAGATTATTTGGAAAACATGGAGAAAAGAAAAAGTAGGTATATTGTTGTTGTTGGAAAATATATCAGTATTTATT GTTTTCCAGTCAATTCTAGAGATTCTATTATTGACTTTTTTATATGTAATAATTTTCTCCTTAATTCAAGGAGTAGTAAT TCTCTCCTTAATTCAAGGAGTAATAATTGTATCCTCTCTATAAATACCAGCCTTTGGCTGAGGAATAAAATAGAACAGCA TTTACCTATTATTTTTCAATATGGTATCAGAGTCTCTATGACCGAGAGGTCTAGAGTTCGATCCTTGCTCCCCTCACTTT CTAATTAAAAAGTGGAATTTAATTAAGCACATGGTAGGTGGGCCTGTGCATTTATCCACGCTTCAAGCCCAAAGGGCTCT TGCGTGAGGGGGCGTGTTAGAATATAATATAAAACCATTAAAGTGGCCCTTACCCAAGAGCTTAAGCTTTTGGGTTAAGT GGTTATTTGACATGGTATCAAGAGCCCTAGGTTGGGACTTCTACTGTAGAGCTTTCCACAGCTAGTCTGATCAACCTATT TCCTTCCCCGACCCGTTTCACATACCCATTTAGCCTCCTATGGCAGGTCGCAATAGGTGGCCCTCCATAGCAGAGGCCTA CACCGGATCCACAGCCAACCACGGCGAACAATCACTTGACTCGGGCGTCAACAGCGGTGATGGCGGTGGCAAAGGAGACG GCGGTGGCCGCGGTAATGGTGGTGGTCGTGGAGATGGCACACCAAAGTTCGTCACAAACAGTGGCGGTAATGACGGCAAC AATGAAAACAGAAACAACAGTGTTTATGGTGACAGTAATGTCAATATAGGTTGCAATGACCAAGAGGGTTCCTCATACTC CCTCAAGGTCAATATTCCTAAGATGAATGGGAAGAACTATAATGAATGGGCCCAAACCGTTCGCTTGGTATTGGATAGCA AAGGGAAGCTTGGTTTTTTAACAGGAGCAGTAGCTGAACCAACAAGCGGAGACCCTCGTTACAAACAATGGAAATCTGAA AACTCCTTGATTATTGCTTGGTTGGTAAGCTCTATGGAAACTGGAATAGGTAAGCCTTACATGTTTTTGCCTTCTGCAAA GGATGTGTGGGAAGCTGTTAAGGAAACATACTCTGATATTCAAAACTCCTCCCAAATTTTTGGTTTAAAATCAAAGTTAT GGCAGGCTAAACAAGGTGACAGGAGTGTAACTGCTTATTACAATGAGTTGTTGACCCTGTGGCAAGAATTAGATCTCTGT TATGATGACAATTGGAGGTGTACAGAAGATAGTGTTCTGTTTCTCAAGAGGCAAGAAAATGATCGTGTCTTCATGTTTCT TGCTGGGCTAAATACAGACCTTGATGAGGTAAGGGGTCGAGTTTTAGGAAAAATACCATTGCCAACTCTTCGTGAAACTT TTGCAGAAATCAGAAGGGAGGAGGCACGACAAGGAATTATGATGGGCAAGACACCACGAAGTTCTGAATCTGAAGGCTCT GCTCTGGCTACTAGGAACCTCGGCGAGGGAAAAAGGTCAGAAAAAGTTCCTTGGTGCGATCACTGCAAGCGCGAATGGCA CACACGTGAAAATTGTTGGAAGCTCATAGGAAAACCTCCTAGCTGGAAGAAGAAAGGTCGTCGTGCATTTCAAGCAAGTA ATTCTGATCAAGGGCAGCAATCCTCTTCGACTCAGCTTCCGCTCACTACGGAACAACTAGACAAACTGCTCAAACTCCTC GAGTCTTCAACCCCTTCTTGCTCTATAGCAACAAAAGGTAATTCTGCATGTCTTAGTGTCAGTCCCAGTCATACTTGGAT ATTAGATTCAGGTGCCTCGGATCACATGACAAGTGAATCCACCTTGTTTTCTTCATATAGTCCATGTGCAGGTAATCAAA AAATAAAAATTGCAGATGGCTCTTTTTCAGCCATTGCAGGTAAAGGGTCAGTTGTGTTGTCTCCAGTGTTAACTCTTAAC GATGTCCTTCATGTTCCAAACTTATCCTGTAATTTAATGTCTGTTAGTAAATTAACCCGAGATATAAATTGTCAAACCAA TTTTTTCCGTTCTCACTGTGTCTTTCAGGATTTGAACTCGGGGAAGATGATTGGCAGTGCTAAGGAGAGTGGAGGACTCT ACTACCTTGACATTGGATCTGCATCACAACTACCTCCAAAAACAATAAGTTCCTGCTTTGAATCCTTTTTTGTTTTGAAT AATAATGATGACAACGTTATGTTATGGCATTTACGATTAGGTCATCCTAGTTTTCATTACTTAAAACACTTGTTTCCTAA GTTATTTTATAATAAGAACCTTTCTTTGCTTAAATGTGAAGCATGTGAGTTTGCAAAGCATCATCGTTCCCAATTTCCAA TACAGCCATATAAACCATCAAAACCTTTTTCTATTGTTCACAGTGATGTTTGGGGCCCTAACCGTACAAGTACACTTTCT CTTAAAAAATGGTTCATCACATTTATAGATGACCATTCAAGAGTATGTTGGGTGTACTTGTTAAAGGGGAAATCAGATGT TTGTCGGGCTGTAAAGGATTTTTGTACAATGGTGCAGAACCAATATCAAACAAATATTCAAGTCTTTAGAAGTGATAATG GCAAAGAATATTTTAACACTATTTTGGATGATTTTTTCCTAAAAAATGGGATTGTACATCAAAGTTCATGTCCTAATACT CCTCAACAAAATGGAGTTGCTGAAAGAAAAAATAGACATTTATTGGAGGTTGCTAGAGCATTACTTTTCTCAAGTAAAGT ACCAAACTATTTGTGGGGCGAAGCTGTTTTAACAGCGGCATATTTAATTAATAGAATGCCCTCCAAAGTTCTCAATTTCC AAACTCCAATTAATACTTTCAAAGAATGTTTTCCTAGTACTCGTGTTTCAACTGATTTGACATTAAAAATCTTTGGTTGC ATAGCCTTTGTTCATGAACATAAAAATGTTGGAAAACTTGAACCACGTGCTATAAAATGTGTTTTTGTTGGATACTCCCC AACCCAAAAGGGGTATAAATGTTTTGATCCAAAAAACAAGAAAATGTTTGTCACTATGGACGTTACGTTTTTTGAAAATA AACCTTTTTTTAATGACACTCATCTTCAAGGGGGGGATATAAAGGAAGACTCGTTTCAAATTGAGGACATGAGTTTTTTA AATAAATTATCTTTGCCTGTACCACAAAGCTCTAAGACTTATAGTTCTGCACCAACAGAAAATGGCCAAGATACTCTATC TGATCCTACTCCTGTTATGAGTAAGGAACTTGAGGAATCAGAGCCTACATTTTCTCATGAAGAAACCAATGAGAATCTTG ACAATAGGGATGATGATGATCTAATTAAAATGCCACAAAATAATGAGTCACTTAAAGAGAACAGATTTGAAGTAGGAAAC AGGACTTGGAAAGGGAAGGTTTATGTGAAAAAGCACCACAAAGAAAGGAATGAGTCCACATCTCAACACTGTCAGGAATC TGAACCGGGGAATGATCAACCTCCTAAGAAAATGAAAGGTAAGTCTATCTCTGTTTCTGAGAGTCGTATTTTGTATCCTG ATATAGATGATCCTGTTGCCATTAGAAAACCTGTTAGATCTTGCACTAAACACCCTATTTCCAATTTTATATCATATTCA AATTTGTCTTCATCTCTGTCTGCCTTCACCTCAAAATTGTCTAGTGTAGAAATTCCAAAAAATGTCCAGGTTGCTCTAGA AATTCCAAAGTGGAGGGAAGCTGTACTTGAGGAGATGACAGCTCTTGAAAAGAACAAAACTTGGAGTGTTATGACACTAC CAGATGGCAAGAAGACAGTTGGATGCAAATGGGTGTTTACTGTGAAGTATAATTCAGATGGGTCAATTGAAAGGTACAAG GCTCGCTTGGTGGCGAAGGGCTTTACTCAGACCTATGGTATAGACTACTCAGAGACATTTGCTCCTGTTGCAAAATTGAA CACTGTCCGAATTCTCTTATCTCTTGCTGCCAACCTGGATTGGCCCCTACATCAATTGGATGTTAAGAATGCGTTTCTTA ATGGTGATCTAGAAGAAGAAGTATATATGGAGATTCCTCCTGGCTTTGAAAGCAAATTTGGATCAAATGTATGCAAACTA AATAGGTCTTTGTATGGATTAAAGCAGTCCCCTAGAGCTTGGTTTGAAAAATTCACTCAGTCCATGAAGAAACAAGGGTA CACTCAAGGACAGGCTGACCACACCTTATTCACAAAATTCTCCCATGATGGGAAAGTTGCTGCCCTGATTGTTTATGTTG ATGATATTGTCCTTACTGGAGATGATACAGTTGAAATGGCAAGAGTAAAAGAGAAATTAGCAGTAGACTTTGAAATCAAG GACTTAGGACCCATGAGATATTTTCTTGGAATGGAGGTTGCTCGATCAAAGAATGGTATTGTGGTTTCACAGCAGAAATA CATTCTAGACTTATTGAAAGAAACAGGAATGAGTGGATGTCGTCCAGCAGATACCCCTATGGATCCTAATGCTAAACTTT GGGAAGAAGGTAGTGTTCCCGTTGATACTGGAAGATACCAAAGATTGGTTGGGAAACTGATTTATTTGTCACACACTCGA CCTGATATTGCTTTCTCAGTTAGTGCAGTGAGTCAGTTCATGCATTCTCCTTTTGAGGAACATCTTGAGGCAGTCTATAG GATACTGAGATATTTGAAGGGAAATCCCGGAAAAGGCTTATTTTTTAAGAAGACTAGTGAAAGAAATGTGTCTATCTTCA CCGATGCTGATTGGGCAGGCTCAGTCACAGATAGAAGATCAACCTCTGGATATTGTACCTATGTTTGGGGTAATCTTGTG ACATGGAGGAGCAAGAAACAAGGAGTTGTGGCAAGAAGTAGTGCAGAAGCTGAGTTTAGAGCTATGGCTCAAGGTATTTG TGAAGGATTATGGATTCATAGAGTCCTAGAAGAACTTAAGATGAAAATTGAGCTTCCATTGAAATTATACTCCGACAGTA AAGCTGCTATTAGCATAGCTCATAACCCAGTTCAACATGACAGAACCAAGCATATTGAGATTGATCGACATTTCATAAAG GAGAAGTTAGATGCTGGAATCATATGTCTACCTTTTGTGACTTCGAGTCAGCAAACTGCGGATATCCTGACCAAGAGCTT GGCAAGACCTACCTTTGAGCATTTGATAGGCAAGTTGGGCATGATAGATATCTATGCACCAACTTGAGGGGGGGTGTTGG AAAATATATCAGTATTTATTGTTTTCCAGTCAATTCTAGAGATTCTATTATTGACTTTTTTATATGTAATAATTTTCTCC TTAATTCAAGGAGTAGTAATTCTCTCCTTAATTCAAGGAGTAATAATTGTATCCTCTCTATAAATACCAGCCTTTGGCTG AGGAATAAAATAGAACAGCATTTACCTATTATTTTTCAATAGTTGTCTTTCAGTGTAAACGGACTTGTACATTTGTGGTG TGACTATCATTTATTTGCTCGAGTACTTCAAATTTTCTTAATAATCAATGCTGCATTTCTTTTGTATTGTATCAAACATG GATATTAGATTACTGGGCCTCCAATCTAAAGGATGCTGAATCACTTTTTCCTTTTAATGCCACTTGAAACTTCTGCTCTT TTTGCCAATTTTTTCTGATTTTTTGTCACAGATGCAGATGCTTTTTTCTTTCATACCTTTGAATTAAGATTTCAAGTTTC CTTCTCTTGAATATTTCCTTCCCTCCTCTGCACTTTTATAGAAGTCTATGCTGTGGAATGCTCCTATTTATCTATAAGGT TATTTGTTAGCAATGCCTCCTTGACAGTAAATTTTATTTCTTCAGAAATCTTTCACTATGCACTGGAGAGAAATGCACTT AAGGCTATTGAGCTAACAGAACAGCTGGCAAAGGATATTCTAGAAAACAATAAGGATTTGCTGTTTGATCTTCTAAGCCT TCATTTTGTAGAGCTTGTCCGCTCTAGGAAATGGTGAGATAAGATTAAATTTTTTCTCCAAGAGAACATGCTTCAAACTT CTTTGTTTTAATAGAATCTCATGATATTGGCAGCACAGAAGCTTTGGAATTTGCTCAGACCAAGTTGAGCCCTTTTGGAA AGGAGCAAAAATATATGCAAAACCTTGAAGTATGTCTGCCTTTTACATAATTCAGTTTATGCATTTGTGGTGTGTTGTTA AGGTTGAAGTAAATATGAAGCTGGCCGTTTTGCAGGATTTTATGGCCCTTCTTGCTTATCAGGAGCCAGAGAAATCCCCA GTGTTTCATTTGCTTAGCCCAGAGTATCGTCAACAGGTTGCAGATAGATTGAATCGAGCTATTCTTGGTAGGTTAACTCG ACCATACTCCTTGCGTAGTGCATATTAATATAATCCTTATTGCAAATCTCCCTACTTTGTTCTACCTGTGTGAAATTATA AGTTTTTTTTGTTCATGTTGGTGATTTTCAGCATACTTTAACCTTCCCAGCCACACAGCAATGGAGAGGCTGATACAGCA GACGACAGTAGTTAGACAGTGCTTAAGTCAGGAGGCTGGAAAGGTAATAGGCAATTTATAATATTCCTTTATCATTTTCT GGGTTTGATGGCTGCATTATGTTGGCTGATTTTTCATGGCATATGCATTTTAGATTCTCACAAATTTCTGTATATCTGAG AAACTATTTGATCGCTTATCTATTTTTCGAGTGAGAGCATGTAAGCAAGCACTCACAAGTGCGAAAAGAGATGTAACTGC TCTATTGTCCACAAGTTCAAGTTATGATTTCTTGATTAACTCTTTGTAGGATGGGCACCAGCCATTTTCCTTGAAGGATT TTCTTAAGAGAAGATGA
CDS sequence (LotjaGi5g1v0011300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAAGACATCCCCAATATTGTTCTGTCATATCTTATACATAATTGCTATGAAGAGTCAGTGGAATCATTCATTTCA TGCACTGGGATTAAGAAGCCTGCAGATTATTTGGAAAACATGGAGAAAAGAAAAAGTAGAAATCTTTCACTATGCACTGG AGAGAAATGCACTTAAGGCTATTGAGCTAACAGAACAGCTGGCAAAGGATATTCTAGAAAACAATAAGGATTTGCTGTTT GATCTTCTAAGCCTTCATTTTGTAGAGCTTGTCCGCTCTAGGAAATGCACAGAAGCTTTGGAATTTGCTCAGACCAAGTT GAGCCCTTTTGGAAAGGAGCAAAAATATATGCAAAACCTTGAAGATTTTATGGCCCTTCTTGCTTATCAGGAGCCAGAGA AATCCCCAGTGTTTCATTTGCTTAGCCCAGAGTATCGTCAACAGGTTGCAGATAGATTGAATCGAGCTATTCTTGCATAC TTTAACCTTCCCAGCCACACAGCAATGGAGAGGCTGATACAGCAGACGACAGTAGTTAGACAGTGCTTAAGTCAGGAGGC TGGAAAGGATGGGCACCAGCCATTTTCCTTGAAGGATTTTCTTAAGAGAAGATGA
Protein sequence (LotjaGi5g1v0011300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKTSPILFCHILYIIAMKSQWNHSFHALGLRSLQIIWKTWRKEKVEIFHYALERNALKAIELTEQLAKDILENNKDLLF DLLSLHFVELVRSRKCTEALEFAQTKLSPFGKEQKYMQNLEDFMALLAYQEPEKSPVFHLLSPEYRQQVADRLNRAILAY FNLPSHTAMERLIQQTTVVRQCLSQEAGKDGHQPFSLKDFLKRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 41 | 98 | 58 | 10.305 | ||
| SMART | 41 | 98 | 58 | 7.0E-5 | ||
| PANTHER | 45 | 202 | 158 | 6.4E-83 | – | |
| PANTHER | 45 | 202 | 158 | 6.4E-83 | – | |
| Pfam | 47 | 180 | 134 | 7.4E-32 | ||
| SMART | 94 | 189 | 96 | 5.4E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0011300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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