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LotjaGi5g1v0012600.2

Overview

Field Value
Gene ID LotjaGi5g1v0012600
Transcript ID LotjaGi5g1v0012600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Bifunctional nuclease 1; TAIR: AT1G19660.3 Wound-responsive family protein; Swiss-Prot: sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2; TrEMBL-Plants: tr|I3T9N9|I3T9N9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0012600
Working Lj name n.a.

We have encountered a general error: No InterPro domain data available

Sequence information

Genomic sequence (LjG1.1_chr5:2734153..2734560) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGAGTAATTGAATCAGGCAAACTGTCAACACAGTTCCCTGGTTTCGATGGCCGATTATTTACTGAAATGGACCGGTA TGTGTGAAAAATACCTTATAGTTAGTAACAATGCAATATGACTTGTCTGTAGTATGTGTAATTTTTCTTTTTTTATTTAA AAATAATAATAAAATCTTAGTATCTTTTTCATGATTAGTCATTTTTCCATCGTGAAAGACGTCCTTTAGCTAAAGGTGAC ATAATTGCAGGCCAAATGGTCAGCCATGTGTTGAAACTGAGGAATTCAATCTTTTGCACAACATGTTGAAAGCTGTTGGT GAAGAACGCTATAAAGATGCTGGTAATTATTGTTTTCTTATTAATTCTATAATTTATTGACTTTTTTATGCTCTGGGGCC ATTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0012600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAGTAATTGAATCAGGCAAACTGTCAACACAGTTCCCTGGTTTCGATGGCCGATTATTTACTGAAATGGACCGGCC AAATGGTCAGCCATGTGTTGAAACTGAGGAATTCAATCTTTTGCACAACATGTTGAAAGCTGTTGGTGAAGAACGCTATA AAGATGCTGGTAATTATTGTTTTCTTATTAATTCTATAATTTATTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0012600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRVIESGKLSTQFPGFDGRLFTEMDRPNGQPCVETEEFNLLHNMLKAVGEERYKDAGNYCFLINSIIY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Unable to find any records for the transcript with the identifer LotjaGi5g1v0012600.2.

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0012600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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